jgi.p|Nanoce1779_2|597797, mRNA_6714 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597797
Unique Name	mRNA_6714
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2060
Alignment location	scaffold_18:513011..515070 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597883
Track	FilteredModels2
ProteinId	597797

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:513011..515070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597797	gene_6714	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597797	mRNA_6714-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6714	CDS_6714	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:513011..515070+
coding sequence from alignment at scaffold_18:513011..515070+

mRNA sequence

>mRNA_6714 ID=mRNA_6714|Name=jgi.p|Nanoce1779_2|597797|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp
AACAGGCAATGAATCGCAGTGGCTACTTTAGTAGGCCTTCCCTCTTTCCG
CGGCTGAAATCGGGCAGCAGGGACGATGGAGCAGGCGGGTACAGCAGCAG
CACCAGCATCAGCACAAGCAGTAGCACCAGCACGGGCAAGAACGTCTCGT
CCTCCTCGTCTTGGGGTTTTTGGGGCAAAACACCACCACCGCAGAGTAGC
AGCAGCAGCGGTTTGACGACCGTGAATCGCGGCGGACAGGCTTTCTCATC
TTCTGTCCCTTTCAGCTGCACTACCCCCAGCAGCAACCACTCAAGTTCCC
TGTCTTCCCTCTCTTCCGAACAGTGCGAGCAGGCCTACCAGATCATTGAC
GCCGGATTCTGGCGCTTCGTGGACCGCGTTATTTTCGCTCGGACTGCTAC
GAAGGACCGCGCACCGTTGGTGGAGCTTGTCGAGGGCATCCGCACCGCAC
CCTACCTGCTCAATCTCTACGGCCAAGATCAAATTGATGAAATGCTGGCC
CCCGTTGAAGCCAACGCAAATTATGTGACCTTGCCGCATGGACCGTCCAA
GATGCTCCAAGTGACTTGGGTGACGTTGCCCGAGTTCAAGAGGATGTGTT
CTTCTGTATCTGCTGCTCCTAATCCTGCTCCTGCCGTCACCCCTACTTCC
GGCACAGCCACCAGCAATAGCAACAGCGGTAGCAGCAGCTGTAGCAGCAG
TATCATCCGTATGAGAGGCCAGGCTGGCTCTCCGAAACGCCGTCGTGCCA
ACCCCGATCATGAAGGCGGTCTAGCTCTGTCCAGACCCACCACCACCACC
ACCTCTTCCTCCTCTTCCTCCTCATCCTCCTCCTCCTCTTCCTCTCCTTC
CTCCTCCTCACGCCGCCTCTCCATCGCCACCGGTCTGGATATGAATAAGG
AAAAGCTGCTGTCACTGCTTCAGGACATTTCAGATGAATACCACGTACAG
GAAGGATCGCACGCAGAGGAGGAAGCTGCAGGGTCAGAGGCAAGGGTGGA
GGGAGTCCTGGCGGCCTTTGGCGCCCGGCAAGATCCGATGCGGGAGGCAT
TGGCTGCGGTGGAAGAGACGCTGCAACTAAAGACGGAGGCGAGAAAGAAG
GCGGGGGGAAGGGATCGAAGGGACAGAAAGGCGGAGATGGAGATACGGAT
GGCGGTGGATGTAAAGGAGGCAATAGTGAGGGAGCGTATGGCCCCGCTGT
CGGAGGATGAGCAGGAAGAGATTCATCAGTTGTTGCGGCACGGAAGGGAC
ACTGACGTGGTAGTAAGCGGGTTTAACGTGGATATGCGACGCCAAGACAT
CCGGACGTGTGCCCCTTGCACCTGGTTGAACGACGAGGTGATCAACTTTT
TCATGAATCTGCTCAAGGAAAGAGACCATGCTTTGGTGGCAGAGGCAGCG
GCCAAGGGGAAAGAGAGGCGTAGCAACTGGTTTTTCAACTCCTTCTTCAT
CAGTAAGCTTCTTGACGACAACAATGGGTATAAATACGCGAATGTCAAGC
GTTGGTCTCGCAAGGCCGGGGATTTGTTCAGCTACGACAAGGTCTTTTTC
CCTGTCAATATTGGTAATTCGCACTGGTGCCTCGCTGTCATTCACATGCA
AGAAAAAAAGATCAAGTACTTCGATTCTCTTGTAGGCACCGGTCGAGAAT
ACCTCCTCCACCTCCGCCGATACCTGGAGGATGAGCATCAGGATAAAAAG
AAAAAGACGTTGGATGTGAGTGGGTGGGAATTGGTTCATTCGGACAGGCA
AGTGGTGCCCCAGCAGGCTAACGGTGCGGATTGTGGCTGTTTTGCTACAG
CATTCGCCTACATGTTGAGCGAAAATTTGCCGATCAAGTACATCTCACAG
GCAGACATGCCGGCATTCCGGCAGCGGTTGGTCATGAGCATTATGAAGAA
GGCGCTGACTTGGTGAGATAGGTAGGGAGGGGTAGAGGTAGGGATGAAAA
GACAGCGAAAACATAGGCCAACTGTCCAGCATCCAATACCTAAGAGAGTG
AGCAATAAATTGCAACATACAAGCGTCACAAACATAAAAGCAACACCATA
ATCATTGTAA

protein sequence of jgi.p|Nanoce1779_2|597797

>mRNA_6714-protein ID=mRNA_6714-protein|Name=jgi.p|Nanoce1779_2|597797|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MNRSGYFSRPSLFPRLKSGSRDDGAGGYSSSTSISTSSSTSTGKNVSSSS
SWGFWGKTPPPQSSSSSGLTTVNRGGQAFSSSVPFSCTTPSSNHSSSLSS
LSSEQCEQAYQIIDAGFWRFVDRVIFARTATKDRAPLVELVEGIRTAPYL
LNLYGQDQIDEMLAPVEANANYVTLPHGPSKMLQVTWVTLPEFKRMCSSV
SAAPNPAPAVTPTSGTATSNSNSGSSSCSSSIIRMRGQAGSPKRRRANPD
HEGGLALSRPTTTTTSSSSSSSSSSSSSSPSSSSRRLSIATGLDMNKEKL
LSLLQDISDEYHVQEGSHAEEEAAGSEARVEGVLAAFGARQDPMREALAA
VEETLQLKTEARKKAGGRDRRDRKAEMEIRMAVDVKEAIVRERMAPLSED
EQEEIHQLLRHGRDTDVVVSGFNVDMRRQDIRTCAPCTWLNDEVINFFMN
LLKERDHALVAEAAAKGKERRSNWFFNSFFISKLLDDNNGYKYANVKRWS
RKAGDLFSYDKVFFPVNIGNSHWCLAVIHMQEKKIKYFDSLVGTGREYLL
HLRRYLEDEHQDKKKKTLDVSGWELVHSDRQVVPQQANGADCGCFATAFA
YMLSENLPIKYISQADMPAFRQRLVMSIMKKALTW*

mRNA from alignment at scaffold_18:513011..515070+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6714 ID=mRNA_6714|Name=jgi.p|Nanoce1779_2|597797|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp|location=Sequence derived from alignment at scaffold_18:513011..515070+ (Nannochloropsis oceanica)
AACAGGCAATGAATCGCAGTGGCTACTTTAGTAGGCCTTCCCTCTTTCCG
CGGCTGAAATCGGGCAGCAGGGACGATGGAGCAGGCGGGTACAGCAGCAG
CACCAGCATCAGCACAAGCAGTAGCACCAGCACGGGCAAGAACGTCTCGT
CCTCCTCGTCTTGGGGTTTTTGGGGCAAAACACCACCACCGCAGAGTAGC
AGCAGCAGCGGTTTGACGACCGTGAATCGCGGCGGACAGGCTTTCTCATC
TTCTGTCCCTTTCAGCTGCACTACCCCCAGCAGCAACCACTCAAGTTCCC
TGTCTTCCCTCTCTTCCGAACAGTGCGAGCAGGCCTACCAGATCATTGAC
GCCGGATTCTGGCGCTTCGTGGACCGCGTTATTTTCGCTCGGACTGCTAC
GAAGGACCGCGCACCGTTGGTGGAGCTTGTCGAGGGCATCCGCACCGCAC
CCTACCTGCTCAATCTCTACGGCCAAGATCAAATTGATGAAATGCTGGCC
CCCGTTGAAGCCAACGCAAATTATGTGACCTTGCCGCATGGACCGTCCAA
GATGCTCCAAGTGACTTGGGTGACGTTGCCCGAGTTCAAGAGGATGTGTT
CTTCTGTATCTGCTGCTCCTAATCCTGCTCCTGCCGTCACCCCTACTTCC
GGCACAGCCACCAGCAATAGCAACAGCGGTAGCAGCAGCTGTAGCAGCAG
TATCATCCGTATGAGAGGCCAGGCTGGCTCTCCGAAACGCCGTCGTGCCA
ACCCCGATCATGAAGGCGGTCTAGCTCTGTCCAGACCCACCACCACCACC
ACCTCTTCCTCCTCTTCCTCCTCATCCTCCTCCTCCTCTTCCTCTCCTTC
CTCCTCCTCACGCCGCCTCTCCATCGCCACCGGTCTGGATATGAATAAGG
AAAAGCTGCTGTCACTGCTTCAGGACATTTCAGATGAATACCACGTACAG
GAAGGATCGCACGCAGAGGAGGAAGCTGCAGGGTCAGAGGCAAGGGTGGA
GGGAGTCCTGGCGGCCTTTGGCGCCCGGCAAGATCCGATGCGGGAGGCAT
TGGCTGCGGTGGAAGAGACGCTGCAACTAAAGACGGAGGCGAGAAAGAAG
GCGGGGGGAAGGGATCGAAGGGACAGAAAGGCGGAGATGGAGATACGGAT
GGCGGTGGATGTAAAGGAGGCAATAGTGAGGGAGCGTATGGCCCCGCTGT
CGGAGGATGAGCAGGAAGAGATTCATCAGTTGTTGCGGCACGGAAGGGAC
ACTGACGTGGTAGTAAGCGGGTTTAACGTGGATATGCGACGCCAAGACAT
CCGGACGTGTGCCCCTTGCACCTGGTTGAACGACGAGGTGATCAACTTTT
TCATGAATCTGCTCAAGGAAAGAGACCATGCTTTGGTGGCAGAGGCAGCG
GCCAAGGGGAAAGAGAGGCGTAGCAACTGGTTTTTCAACTCCTTCTTCAT
CAGTAAGCTTCTTGACGACAACAATGGGTATAAATACGCGAATGTCAAGC
GTTGGTCTCGCAAGGCCGGGGATTTGTTCAGCTACGACAAGGTCTTTTTC
CCTGTCAATATTGGTAATTCGCACTGGTGCCTCGCTGTCATTCACATGCA
AGAAAAAAAGATCAAGTACTTCGATTCTCTTGTAGGCACCGGTCGAGAAT
ACCTCCTCCACCTCCGCCGATACCTGGAGGATGAGCATCAGGATAAAAAG
AAAAAGACGTTGGATGTGAGTGGGTGGGAATTGGTTCATTCGGACAGGCA
AGTGGTGCCCCAGCAGGCTAACGGTGCGGATTGTGGCTGTTTTGCTACAG
CATTCGCCTACATGTTGAGCGAAAATTTGCCGATCAAGTACATCTCACAG
GCAGACATGCCGGCATTCCGGCAGCGGTTGGTCATGAGCATTATGAAGAA
GGCGCTGACTTGGTGAGATAGGTAGGGAGGGGTAGAGGTAGGGATGAAAA
GACAGCGAAAACATAGGCCAACTGTCCAGCATCCAATACCTAAGAGAGTG
AGCAATAAATTGCAACATACAAGCGTCACAAACATAAAAGCAACACCATA
ATCATTGTAA

Coding sequence (CDS) from alignment at scaffold_18:513011..515070+

>mRNA_6714 ID=mRNA_6714|Name=jgi.p|Nanoce1779_2|597797|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_18:513011..515070+ (Nannochloropsis oceanica)
ATGAATCGCAGTGGCTACTTTAGTAGGCCTTCCCTCTTTCCGCGGCTGAA
ATCGGGCAGCAGGGACGATGGAGCAGGCGGGTACAGCAGCAGCACCAGCA
TCAGCACAAGCAGTAGCACCAGCACGGGCAAGAACGTCTCGTCCTCCTCG
TCTTGGGGTTTTTGGGGCAAAACACCACCACCGCAGAGTAGCAGCAGCAG
CGGTTTGACGACCGTGAATCGCGGCGGACAGGCTTTCTCATCTTCTGTCC
CTTTCAGCTGCACTACCCCCAGCAGCAACCACTCAAGTTCCCTGTCTTCC
CTCTCTTCCGAACAGTGCGAGCAGGCCTACCAGATCATTGACGCCGGATT
CTGGCGCTTCGTGGACCGCGTTATTTTCGCTCGGACTGCTACGAAGGACC
GCGCACCGTTGGTGGAGCTTGTCGAGGGCATCCGCACCGCACCCTACCTG
CTCAATCTCTACGGCCAAGATCAAATTGATGAAATGCTGGCCCCCGTTGA
AGCCAACGCAAATTATGTGACCTTGCCGCATGGACCGTCCAAGATGCTCC
AAGTGACTTGGGTGACGTTGCCCGAGTTCAAGAGGATGTGTTCTTCTGTA
TCTGCTGCTCCTAATCCTGCTCCTGCCGTCACCCCTACTTCCGGCACAGC
CACCAGCAATAGCAACAGCGGTAGCAGCAGCTGTAGCAGCAGTATCATCC
GTATGAGAGGCCAGGCTGGCTCTCCGAAACGCCGTCGTGCCAACCCCGAT
CATGAAGGCGGTCTAGCTCTGTCCAGACCCACCACCACCACCACCTCTTC
CTCCTCTTCCTCCTCATCCTCCTCCTCCTCTTCCTCTCCTTCCTCCTCCT
CACGCCGCCTCTCCATCGCCACCGGTCTGGATATGAATAAGGAAAAGCTG
CTGTCACTGCTTCAGGACATTTCAGATGAATACCACGTACAGGAAGGATC
GCACGCAGAGGAGGAAGCTGCAGGGTCAGAGGCAAGGGTGGAGGGAGTCC
TGGCGGCCTTTGGCGCCCGGCAAGATCCGATGCGGGAGGCATTGGCTGCG
GTGGAAGAGACGCTGCAACTAAAGACGGAGGCGAGAAAGAAGGCGGGGGG
AAGGGATCGAAGGGACAGAAAGGCGGAGATGGAGATACGGATGGCGGTGG
ATGTAAAGGAGGCAATAGTGAGGGAGCGTATGGCCCCGCTGTCGGAGGAT
GAGCAGGAAGAGATTCATCAGTTGTTGCGGCACGGAAGGGACACTGACGT
GGTAGTAAGCGGGTTTAACGTGGATATGCGACGCCAAGACATCCGGACGT
GTGCCCCTTGCACCTGGTTGAACGACGAGGTGATCAACTTTTTCATGAAT
CTGCTCAAGGAAAGAGACCATGCTTTGGTGGCAGAGGCAGCGGCCAAGGG
GAAAGAGAGGCGTAGCAACTGGTTTTTCAACTCCTTCTTCATCAGTAAGC
TTCTTGACGACAACAATGGGTATAAATACGCGAATGTCAAGCGTTGGTCT
CGCAAGGCCGGGGATTTGTTCAGCTACGACAAGGTCTTTTTCCCTGTCAA
TATTGGTAATTCGCACTGGTGCCTCGCTGTCATTCACATGCAAGAAAAAA
AGATCAAGTACTTCGATTCTCTTGTAGGCACCGGTCGAGAATACCTCCTC
CACCTCCGCCGATACCTGGAGGATGAGCATCAGGATAAAAAGAAAAAGAC
GTTGGATGTGAGTGGGTGGGAATTGGTTCATTCGGACAGGCAAGTGGTGC
CCCAGCAGGCTAACGGTGCGGATTGTGGCTGTTTTGCTACAGCATTCGCC
TACATGTTGAGCGAAAATTTGCCGATCAAGTACATCTCACAGGCAGACAT
GCCGGCATTCCGGCAGCGGTTGGTCATGAGCATTATGAAGAAGGCGCTGA
CTTGGTGA

Synonyms

Publications