jgi.p|Nanoce1779_2|597791, mRNA_6712 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597791
Unique Name	mRNA_6712
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2099
Alignment location	scaffold_18:507737..510091 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597877
Track	FilteredModels2
ProteinId	597791

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:507737..510091 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597791	gene_6712	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597791	mRNA_6712-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6712	CDS_6712	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:507737..510091-
coding sequence from alignment at scaffold_18:507737..510091-

mRNA sequence

>mRNA_6712 ID=mRNA_6712|Name=jgi.p|Nanoce1779_2|597791|organism=Nannochloropsis oceanica|type=mRNA|length=2099bp
GGGCAGACAATCTATTGATTGAAACTTAGATTACCAAACTGTCGCTTGTC
GTCGCCGATGACGACTCGTTCTGACGACCATCGTAACGTCTGCTGAAAGC
ACTCTCCTCTTACGGCAAAGCGATGCTCGGCTAAACCACAAAAGCCTTCC
CCACCTTTTCTCGGCTCTTCCCCTTGTCGGTACGATAGTGTTGGGTAGTT
GAAGAGCAAGAATCAAAGAACCAGGAAGGAATTATCTTTCAGTTATGAGA
CGAGATTCCGGGCGGAAGGATGCCATGAACTTCTTCAATCTCGCTCATCA
AACGCCCGCCTCTCCCTTACCCATGCCTCACCACTGGACAGGGTCGGCGG
CAGCGCTACCAACGAATCAGATAACCTGCTGAAGGAGCTGCGCTGTGTGT
CCTGGTCGTCCGGGGTCCACCTATCCCCCTCATCCAAAGAGTCTTCTAAC
TACTCTGCACACCTTGCTTTGATTCATCACACCACCCTGACAGTCGTGCT
ACCATCCCAAACACACACAGCGCTCGTCCGTCCCGTCCACCCTTTGTATT
CTCATTATCAAGGATGGCCTCGAGAGTCTGCCGTGTCAGCGCCAGCCTCC
GCTCGTGGAGCTCGCACCTATCCTCTGCGGCCACGTCCACGGTCCAACCT
ATGGCAGTGCCCCGCCGCATGAGTTCCACGGCCAAGGTCTGGATCGACAA
GAACACGCGTATCATAGTCCAGGGGTTCACGGGAAAGCAAGGCACCTTCC
ATTCGCAGCAGGCTATCGATTATTACGGGACCAAGGTCGTGGGTGGCGTG
ACCCCTAAGAAGGGCGGCACTATGCATCTTGGTCAACCCGTCTTCGACAC
TGTGGAGGAGGCTGTGCGGGAGCTTAAACCTGACGCGAGCGCCATTTACG
TGCCCCCGCCTTTCTGTGCCTCTGCGATTATCGACGCGATCCAGGCGGAG
ATCCCTTTGGTGGTGGCGATCACGGAGGGCATCCCCCAGCAGGACATGGT
CAAAGTCAAATGGTACCTCAAGCAGCAGACTAAAACCCGCCTCATTGGGC
CCAACTGCCCCGGGATCATTAAACCGGAAGAATGCAAGATCGGCATCATG
CCTGGCGCCATCCACAAGAAGGGAAACATCGGCATTGTTTCTCGTTCCGG
CACATTGACCTACGAGGCTGTCGGGCAGACGACGGCGGTAGGGCTGGGAC
AGAGTACGTGTGTGGGGATTGGAGGGGACCCGTTCAATGGAACCAATTTT
ATTGACTGCTTGGAGAGGTTTACGGCGGATCCGGAGACGAAGGGGATTAT
CATGATAGGGGAAATCGGGGGGTCGGCGGAGGAGGAGGCGGCGGAGTGGT
TGGAGGAACATGGGGATAAGAGCAAGCCGGTCGTGTCGTTCATTGCGGGA
AGTACCGCACCGCCGGGACGGAGGATGGGACATGCGGGGGCTATCATTAG
TGGAGGGAAGGGAACGGCGGCAGGTAAGTTTGAGGCGTTGGAGAAGGCGG
GAGTGCACGTGACGCGGTCGCCGGCTTTGCTGGGCGAGACGATGCTGAGG
GCCATGACGGGGAAGATGTAGACAGGGAAGGAAAGTGGAAGATTGGAAAG
AAGAGAGGGGGAAGGGCGGTGTCTTTTTTAAGGACAGCCATTCTTTATTT
TCACTGTTTGCGTTTTTGGGGTAGTGGAATTAGTAGGAAAAAAGATGATT
TTTTTTTGTCGAGGGAGAAGGAAAGAAGGGAGAAGCGAATATATATATAT
ATATTTCTGGAGAGAAAGGGTAAGGAGACGCGCAATTTTTGTTGAGGGAG
AAAAAAGGGAAGGAATAAGGGAGGCAGATGGCATGCGTGTTGCGGCCGTT
GCGACCAGAGTGAACAGAAGGGGGGGGATGCAAGGAAAATAGGGGAAGGA
AGGAAAGAAGCATGGACATGAGCGTCTGTATAGGGAGTACGGCGACAAAA
AGACCCTCTCAACGACGGAAAAGACGAAGAGGAAGATGAAAATTAGTATA
GCATGGAGGATAAAGGAAAGGTGCGTGCGTGGCGACGGAGAAAGTGATAG
AAGAGGAAGAAATTGCAACCAAGATTTGGGAGAAAAGCCTTTAACGAAG

protein sequence of jgi.p|Nanoce1779_2|597791

>mRNA_6712-protein ID=mRNA_6712-protein|Name=jgi.p|Nanoce1779_2|597791|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MASRVCRVSASLRSWSSHLSSAATSTVQPMAVPRRMSSTAKVWIDKNTRI
IVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEA
VRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKW
YLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTY
EAVGQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTADPETKGIIMIGE
IGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKG
TAAGKFEALEKAGVHVTRSPALLGETMLRAMTGKM*

mRNA from alignment at scaffold_18:507737..510091-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6712 ID=mRNA_6712|Name=jgi.p|Nanoce1779_2|597791|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at scaffold_18:507737..510091- (Nannochloropsis oceanica)
GGGCAGACAATCTATTGATTGAAACTTAGATTACCAAACTGTCGCTTGTC
GTCGCCGATGACGACTCGTTCTGACGACCATCGTAACGTCTGCTGAAAGC
ACTCTCCTCTTACGGCAAAGCGATGCTCGGCTAAACCACAAAAGCCTTCC
CCACCTTTTCTCGGCTCTTCCCCTTGTCGGTACGATAGTGTTGGGTAGTT
GAAGAGCAAGAATCAAAGAACCAGGAAGGAATTATCTTTCAGTTATGAGA
CGAGATTCCGGGCGGAAGGATGCCATGAACTTCTTCAATCTCGCTCATCA
AACGCCCGCCTCTCCCTTACCCATGCCTCACCACTGGACAGGGTCGGCGG
CAGCGCTACCAACGAATCAGATAACCTGCTGAAGGAGCTGCGCTGTGTGT
CCTGGTCGTCCGGGGTCCACCTATCCCCCTCATCCAAAGAGTCTTCTAAC
TACTCTGCACACCTTGCTTTGATTCATCACACCACCCTGACAGTCGTGCT
ACCATCCCAAACACACACAGCGCTCGTCCGTCCCGTCCACCCTTTGTATT
CTCATTATCAAGGATGGCCTCGAGAGTCTGCCGTGTCAGCGCCAGCCTCC
GCTCGTGGAGCTCGCACCTATCCTCTGCGGCCACGTCCACGGTCCAACCT
ATGGCAGTGCCCCGCCGCATGAGTTCCACGGCCAAGGTCTGGATCGACAA
GAACACGCGTATCATAGTCCAGGGGTTCACGGGAAAGCAAGGCACCTTCC
ATTCGCAGCAGGCTATCGATTATTACGGGACCAAGGTCGTGGGTGGCGTG
ACCCCTAAGAAGGGCGGCACTATGCATCTTGGTCAACCCGTCTTCGACAC
TGTGGAGGAGGCTGTGCGGGAGCTTAAACCTGACGCGAGCGCCATTTACG
TGCCCCCGCCTTTCTGTGCCTCTGCGATTATCGACGCGATCCAGGCGGAG
ATCCCTTTGGTGGTGGCGATCACGGAGGGCATCCCCCAGCAGGACATGGT
CAAAGTCAAATGGTACCTCAAGCAGCAGGTAAGTAGCAGGGCTCAGCCTT
TCCTCCCTCCTTTCCTTCCTCCTTCCCTCCCTCCTTCCCCCCCTCTCCCT
TTCTTTCGCTCTCATTTCCCCTCGTTTCCTTACATCCCTCCTCCCTCTAT
TCCGTTCTTTTCCCTGTCTCCTGCATGCATACCGTCCACTCGTCTCTAAG
AGGGCAACGTCTGTCGCATACCGCTTCATCCTCCTCCACAAATCTCACAC
TCCCTCCCTCCCTCCCTCCTCCCGCCCTTCCCAGACTAAAACCCGCCTCA
TTGGGCCCAACTGCCCCGGGATCATTAAACCGGAAGAATGCAAGATCGGC
ATCATGCCTGGCGCCATCCACAAGAAGGGAAACATCGGCATTGTTTCTCG
TTCCGGCACATTGACCTACGAGGCTGTCGGGCAGACGACGGCGGTAGGGC
TGGGACAGAGTACGTGTGTGGGGATTGGAGGGGACCCGTTCAATGGAACC
AATTTTATTGACTGCTTGGAGAGGTTTACGGCGGATCCGGAGACGAAGGG
GATTATCATGATAGGGGAAATCGGGGGGTCGGCGGAGGAGGAGGCGGCGG
AGTGGTTGGAGGAACATGGGGATAAGAGCAAGCCGGTCGTGTCGTTCATT
GCGGGAAGTACCGCACCGCCGGGACGGAGGATGGGACATGCGGGGGCTAT
CATTAGTGGAGGGAAGGGAACGGCGGCAGGTAAGTTTGAGGCGTTGGAGA
AGGCGGGAGTGCACGTGACGCGGTCGCCGGCTTTGCTGGGCGAGACGATG
CTGAGGGCCATGACGGGGAAGATGTAGACAGGGAAGGAAAGTGGAAGATT
GGAAAGAAGAGAGGGGGAAGGGCGGTGTCTTTTTTAAGGACAGCCATTCT
TTATTTTCACTGTTTGCGTTTTTGGGGTAGTGGAATTAGTAGGAAAAAAG
ATGATTTTTTTTTGTCGAGGGAGAAGGAAAGAAGGGAGAAGCGAATATAT
ATATATATATTTCTGGAGAGAAAGGGTAAGGAGACGCGCAATTTTTGTTG
AGGGAGAAAAAAGGGAAGGAATAAGGGAGGCAGATGGCATGCGTGTTGCG
GCCGTTGCGACCAGAGTGAACAGAAGGGGGGGGATGCAAGGAAAATAGGG
GAAGGAAGGAAAGAAGCATGGACATGAGCGTCTGTATAGGGAGTACGGCG
ACAAAAAGACCCTCTCAACGACGGAAAAGACGAAGAGGAAGATGAAAATT
AGTATAGCATGGAGGATAAAGGAAAGGTGCGTGCGTGGCGACGGAGAAAG
TGATAGAAGAGGAAGAAATTGCAACCAAGATTTGGGAGAAAAGCCTTTAA
CGAAG

Coding sequence (CDS) from alignment at scaffold_18:507737..510091-

>mRNA_6712 ID=mRNA_6712|Name=jgi.p|Nanoce1779_2|597791|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_18:507737..510091- (Nannochloropsis oceanica)
ACTAAAACCCGCCTCATTGGGCCCAACTGCCCCGGGATCATTAAACCGGA
AGAATGCAAGATCGGCATCATGCCTGGCGCCATCCACAAGAAGGGAAACA
TCGGCATTGTTTCTCGTTCCGGCACATTGACCTACGAGGCTGTCGGGCAG
ACGACGGCGGTAGGGCTGGGACAGAGTACGTGTGTGGGGATTGGAGGGGA
CCCGTTCAATGGAACCAATTTTATTGACTGCTTGGAGAGGTTTACGGCGG
ATCCGGAGACGAAGGGGATTATCATGATAGGGGAAATCGGGGGGTCGGCG
GAGGAGGAGGCGGCGGAGTGGTTGGAGGAACATGGGGATAAGAGCAAGCC
GGTCGTGTCGTTCATTGCGGGAAGTACCGCACCGCCGGGACGGAGGATGG
GACATGCGGGGGCTATCATTAGTGGAGGGAAGGGAACGGCGGCAGGTAAG
TTTGAGGCGTTGGAGAAGGCGGGAGTGCACGTGACGCGGTCGCCGGCTTT
GCTGGGCGAGACGATGCTGAGGGCCATGACGGGGAAGATGTAGATGGCCT
CGAGAGTCTGCCGTGTCAGCGCCAGCCTCCGCTCGTGGAGCTCGCACCTA
TCCTCTGCGGCCACGTCCACGGTCCAACCTATGGCAGTGCCCCGCCGCAT
GAGTTCCACGGCCAAGGTCTGGATCGACAAGAACACGCGTATCATAGTCC
AGGGGTTCACGGGAAAGCAAGGCACCTTCCATTCGCAGCAGGCTATCGAT
TATTACGGGACCAAGGTCGTGGGTGGCGTGACCCCTAAGAAGGGCGGCAC
TATGCATCTTGGTCAACCCGTCTTCGACACTGTGGAGGAGGCTGTGCGGG
AGCTTAAACCTGACGCGAGCGCCATTTACGTGCCCCCGCCTTTCTGTGCC
TCTGCGATTATCGACGCGATCCAGGCGGAGATCCCTTTGGTGGTGGCGAT
CACGGAGGGCATCCCCCAGCAGGACATGGTCAAAGTCAAATGGTACCTCA
AGCAGCAGACTAAAACCCGCCTCATTGGGCCCAACTGCCCCGGGATCATT
AAACCGGAAGAATGCAAGATCGGCATCATGCCTGGCGCCATCCACAAGAA
GGGAAACATCGGCATTGTTTCTCGTTCCGGCACATTGACCTACGAGGCTG
TCGGGCAGACGACGGCGGTAGGGCTGGGACAGAGTACGTGTGTGGGGATT
GGAGGGGACCCGTTCAATGGAACCAATTTTATTGACTGCTTGGAGAGGTT
TACGGCGGATCCGGAGACGAAGGGGATTATCATGATAGGGGAAATCGGGG
GGTCGGCGGAGGAGGAGGCGGCGGAGTGGTTGGAGGAACATGGGGATAAG
AGCAAGCCGGTCGTGTCGTTCATTGCGGGAAGTACCGCACCGCCGGGACG
GAGGATGGGACATGCGGGGGCTATCATTAGTGGAGGGAAGGGAACGGCGG
CAGGTAAGTTTGAGGCGTTGGAGAAGGCGGGAGTGCACGTGACGCGGTCG
CCGGCTTTGCTGGGCGAGACGATGCTGAGGGCCATGACGGGGAAGATGTA
GATGGCCTCGAGAGTCTGCCGTGTCAGCGCCAGCCTCCGCTCGTGGAGCT
CGCACCTATCCTCTGCGGCCACGTCCACGGTCCAACCTATGGCAGTGCCC
CGCCGCATGAGTTCCACGGCCAAGGTCTGGATCGACAAGAACACGCGTAT
CATAGTCCAGGGGTTCACGGGAAAGCAAGGCACCTTCCATTCGCAGCAGG
CTATCGATTATTACGGGACCAAGGTCGTGGGTGGCGTGACCCCTAAGAAG
GGCGGCACTATGCATCTTGGTCAACCCGTCTTCGACACTGTGGAGGAGGC
TGTGCGGGAGCTTAAACCTGACGCGAGCGCCATTTACGTGCCCCCGCCTT
TCTGTGCCTCTGCGATTATCGACGCGATCCAGGCGGAGATCCCTTTGGTG
GTGGCGATCACGGAGGGCATCCCCCAGCAGGACATGGTCAAAGTCAAATG
GTACCTCAAGCAGCAG

Synonyms

Publications