jgi.p|Nanoce1779_2|597782, mRNA_6710 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597782
Unique NamemRNA_6710
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length705
Alignment locationscaffold_18:501275..502276 -

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Properties
Property NameValue
TranscriptId597868
TrackFilteredModels2
ProteinId597782
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:501275..502276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597782gene_6710Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597782mRNA_6710-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6710CDS_6710Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6710 ID=mRNA_6710|Name=jgi.p|Nanoce1779_2|597782|organism=Nannochloropsis oceanica|type=mRNA|length=705bp
TGCTGCTGCTGCTGCTTGAAGTGCTGGTGCTACTCCCAGTGACGTTGTCG
CTTCCATTGGTACATTTGTCACTGTCACTTCCACTGCCACTGCCACTGCC
ACAACTGCTGCTGTTGCTGCTGCTGCTCCCGCCGAGGCCAGCGAGAGACG
CCATGGCCATAGAGGGGTGATGCACCAGGTGGTCCAGGCTATTGATCGCG
AAGGCCAGACTCGACCCAATCATCTCCTCCAAATTTTTCTGGGAGCCCCG
AGAAGGTAACGATGCTGTTGCTGAGCCATTCCCACGCGGTGAGTCTCCTC
CAGAGACGGAGGAGGAAGCAGCACCAGCTACAGCAGCTGTGATGGTGCTG
CTGCTCGGACAGGAGGCAGCTGACAAGGCCGCAGGCGTGGTGCTCGACAT
TTGTGTCCCAGTCTTTCCTGCGGCGGCAGCATGGTTGCTGCTGTTGGAAT
TACTGCTGCTGCCCGAGACGCTGTTGCGTGCCCCCGTGACAAATTTAGAC
ACCGAGGCACCAAACATGAGGAAGGATGAGGTGGGCGTTTGTCCTGGGGG
TTCACTGAGCATCCACGGGAGGAAGGTGTACCGCAAAGACTGCTGCTAGC
AGGGGAAACAGGGCTGCGAGGGTGCGTTGAGGTCACGTTTTTGTGTGGTC
GAGTCTCCACCTTCTCTACTCTCACCGAGGTAGGCGTGCTTTAGTTGCTA
TCTGT
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protein sequence of jgi.p|Nanoce1779_2|597782

>mRNA_6710-protein ID=mRNA_6710-protein|Name=jgi.p|Nanoce1779_2|597782|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MVLLLGQEAADKAAGVVLDICVPVFPAAAAWLLLLELLLLPETLLRAPVT
NLDTEAPNMRKDEVGVCPGGSLSIHGRKVYRKDCC*
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mRNA from alignment at scaffold_18:501275..502276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6710 ID=mRNA_6710|Name=jgi.p|Nanoce1779_2|597782|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp|location=Sequence derived from alignment at scaffold_18:501275..502276- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTTGAAGTGCTGGTGCTACTCCCAGTGACGTTGTCG
CTTCCATTGGTACATTTGTCACTGTCACTTCCACTGCCACTGCCACTGCC
ACAACTGCTGCTGTTGCTGCTGCTGCTCCCGCCGAGGCCAGCGAGAGACG
CCATGGCCATAGAGGGGTGATGCACCAGGTGGTCCAGGCTATTGATCGCG
AAGGCCAGACTCGACCCAATCATCTCCTCCAAATTTTTCTGGGAGCCCCG
AGAAGGTAACGATGCTGTTGCTGAGCCATTCCCACGCGGTGAGTCTCCTC
CAGAGACGGAGGAGGAAGCAGCACCAGCTACAGCAGCTGTGATGGTGCTG
CTGCTCGGACAGGAGGCAGCTGACAAGGCCGCAGGCGTGGTGCTCGACAT
TTGTGTCCCAGTCTTTCCTGCGGCGGCAGCATGGTTGCTGCTGTTGGAAT
TACTGCTGCTGCCCGAGACGCTGTTGCGTGCCCCCGTGACAAATTTAGAC
ACCGAGGCACCAAACATGAGGAAGGATGAGGTGGGCGTTTGTCCTGGGGG
TTCACTGAGCATCCACGGGAGGAAGGTGTACCGCAAAGACTGCTGCTAGC
AGGGGAAACAGGGCTGTGTGGTTGGTACAGTCATGATTGTGGTGATGGTA
ATTAGTGACGGCATAAAAAATCAGTTGGAAGTGAGGATAGGAGTGCCCTC
CCTCGCGTCCGTCTTCCCTTTCCCCTTTGACAAAATCGAGGCACCGTAAA
TGGGCGATGGCGGCATGATGTGATAAAAAAGTTTAACCCACCCGTGCAGC
CACTTGAAGCCGAGGTAATGCCTGTGCAAGAGCACGCCGCGCCGTTCAAA
CCCGCTCCCTCCCTCCACCGTTCCCTCCCTCAACCTCAACACTCTAATCC
CAAGCCATACCTGCGAGGGTGCGTTGAGGTCACGTTTTTGTGTGGTCGAG
TCTCCACCTTCTCTACTCTCACCGAGGTAGGCGTGCTTTAGTTGCTATCT
GT
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Coding sequence (CDS) from alignment at scaffold_18:501275..502276-

>mRNA_6710 ID=mRNA_6710|Name=jgi.p|Nanoce1779_2|597782|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_18:501275..502276- (Nannochloropsis oceanica)
ATGGTGCTGCTGCTCGGACAGGAGGCAGCTGACAAGGCCGCAGGCGTGGT
GCTCGACATTTGTGTCCCAGTCTTTCCTGCGGCGGCAGCATGGTTGCTGC
TGTTGGAATTACTGCTGCTGCCCGAGACGCTGTTGCGTGCCCCCGTGACA
AATTTAGACACCGAGGCACCAAACATGAGGAAGGATGAGGTGGGCGTTTG
TCCTGGGGGTTCACTGAGCATCCACGGGAGGAAGGTGTACCGCAAAGACT
GCTGCTAG
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Synonyms
Publications