jgi.p|Nanoce1779_2|573740, mRNA_671 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573740
Unique NamemRNA_671
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length929
Alignment locationscaffold_2:155053..155981 +

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Properties
Property NameValue
TranscriptId573826
TrackFilteredModels2
ProteinId573740
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:155053..155981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573740gene_671Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573740mRNA_671-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_671CDS_671Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_671 ID=mRNA_671|Name=jgi.p|Nanoce1779_2|573740|organism=Nannochloropsis oceanica|type=mRNA|length=929bp
TGACAAGCGTATGCGTGCGGAAGGGAAGGGAGGGTGGGAGGGAGGAGTGG
AAGTGAAGAAGGAGAAGGAGCCCCGCCCGATTCAGGCGACGCCTGCTGAG
CTTGCTGCTGCGATGAAATTGAAGGCAACCACGGGCATGGGCCTGGAAGA
GGGGCTGACGGCGTTGAGGGTGAATAGATTTAACCCGGAGGAGGCAGTTA
AGTGGTACATTGAGGCAAGTCAGCAGAATCGGATGGAGATGGCTTTGGTG
CATCACGCGAGCATTGAGAGTGAGAAGGCCAATGATGAGTACAGGAAGGT
GGAGAGCGCGAGGCAGGAGCAGTTGATGCGGGAGGGGGATGTGCTGGGAG
GAGGTGATTTCAAGGACTCGACCTTGGTGGGGGGGGAAGGAAGGGAGGGA
GGAAGCGAAGCGGTGGGTGCGTTTTTGAGAAGGTTTTGTTGCTTGAAGGC
TGAGAGGTTTGAAACGGAGGGGATGGGGGACGAAGGGGTGGCGCGCCGGA
GGGAGCTGGTTGTGAAGCTGTTGATCAAGGAGAAGGAGGCGGTAAGGTTC
TACAAGCACAACGCTGTGGCTTATATGAAGGCGTTGGCGAATCGGTTGGA
TGCCGCAGCGGCGATGGGAGGTGGGAAGGGAGGGAACGACGGGAAAGATG
TGTTGCCGTTGTCGCTGCTTGAGGAGGAGGCGGAGGCGTTGGAAAGCGCG
TTGACAAAGTACCCGGAAGGAAACGTTGGGGGAGTCCCTGCCCAGTTTTT
GAAGTACTCGAGCGTGGGGCTTGACCTGGATCAGGATGGATTGGAGGTCG
TGTCAGAGAGCGGGGAGGGAGGCGAAGGGGAAGAGGGGGCAGTGTCGGAC
GGGAAGGAAGGTGGGAGAAGGAGGTCGACGGTGAGAGAGTGTATAGAGGT
GATGGATGATTAAAATGGTAGAACGAGGG
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protein sequence of jgi.p|Nanoce1779_2|573740

>mRNA_671-protein ID=mRNA_671-protein|Name=jgi.p|Nanoce1779_2|573740|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MRAEGKGGWEGGVEVKKEKEPRPIQATPAELAAAMKLKATTGMGLEEGLT
ALRVNRFNPEEAVKWYIEASQQNRMEMALVHHASIESEKANDEYRKVESA
RQEQLMREGDVLGGGDFKDSTLVGGEGREGGSEAVGAFLRRFCCLKAERF
ETEGMGDEGVARRRELVVKLLIKEKEAVRFYKHNAVAYMKALANRLDAAA
AMGGGKGGNDGKDVLPLSLLEEEAEALESALTKYPEGNVGGVPAQFLKYS
SVGLDLDQDGLEVVSESGEGGEGEEGAVSDGKEGGRRRSTVRECIEVMDD
*
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mRNA from alignment at scaffold_2:155053..155981+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_671 ID=mRNA_671|Name=jgi.p|Nanoce1779_2|573740|organism=Nannochloropsis oceanica|type=mRNA|length=929bp|location=Sequence derived from alignment at scaffold_2:155053..155981+ (Nannochloropsis oceanica)
TGACAAGCGTATGCGTGCGGAAGGGAAGGGAGGGTGGGAGGGAGGAGTGG
AAGTGAAGAAGGAGAAGGAGCCCCGCCCGATTCAGGCGACGCCTGCTGAG
CTTGCTGCTGCGATGAAATTGAAGGCAACCACGGGCATGGGCCTGGAAGA
GGGGCTGACGGCGTTGAGGGTGAATAGATTTAACCCGGAGGAGGCAGTTA
AGTGGTACATTGAGGCAAGTCAGCAGAATCGGATGGAGATGGCTTTGGTG
CATCACGCGAGCATTGAGAGTGAGAAGGCCAATGATGAGTACAGGAAGGT
GGAGAGCGCGAGGCAGGAGCAGTTGATGCGGGAGGGGGATGTGCTGGGAG
GAGGTGATTTCAAGGACTCGACCTTGGTGGGGGGGGAAGGAAGGGAGGGA
GGAAGCGAAGCGGTGGGTGCGTTTTTGAGAAGGTTTTGTTGCTTGAAGGC
TGAGAGGTTTGAAACGGAGGGGATGGGGGACGAAGGGGTGGCGCGCCGGA
GGGAGCTGGTTGTGAAGCTGTTGATCAAGGAGAAGGAGGCGGTAAGGTTC
TACAAGCACAACGCTGTGGCTTATATGAAGGCGTTGGCGAATCGGTTGGA
TGCCGCAGCGGCGATGGGAGGTGGGAAGGGAGGGAACGACGGGAAAGATG
TGTTGCCGTTGTCGCTGCTTGAGGAGGAGGCGGAGGCGTTGGAAAGCGCG
TTGACAAAGTACCCGGAAGGAAACGTTGGGGGAGTCCCTGCCCAGTTTTT
GAAGTACTCGAGCGTGGGGCTTGACCTGGATCAGGATGGATTGGAGGTCG
TGTCAGAGAGCGGGGAGGGAGGCGAAGGGGAAGAGGGGGCAGTGTCGGAC
GGGAAGGAAGGTGGGAGAAGGAGGTCGACGGTGAGAGAGTGTATAGAGGT
GATGGATGATTAAAATGGTAGAACGAGGG
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Coding sequence (CDS) from alignment at scaffold_2:155053..155981+

>mRNA_671 ID=mRNA_671|Name=jgi.p|Nanoce1779_2|573740|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_2:155053..155981+ (Nannochloropsis oceanica)
ATGCGTGCGGAAGGGAAGGGAGGGTGGGAGGGAGGAGTGGAAGTGAAGAA
GGAGAAGGAGCCCCGCCCGATTCAGGCGACGCCTGCTGAGCTTGCTGCTG
CGATGAAATTGAAGGCAACCACGGGCATGGGCCTGGAAGAGGGGCTGACG
GCGTTGAGGGTGAATAGATTTAACCCGGAGGAGGCAGTTAAGTGGTACAT
TGAGGCAAGTCAGCAGAATCGGATGGAGATGGCTTTGGTGCATCACGCGA
GCATTGAGAGTGAGAAGGCCAATGATGAGTACAGGAAGGTGGAGAGCGCG
AGGCAGGAGCAGTTGATGCGGGAGGGGGATGTGCTGGGAGGAGGTGATTT
CAAGGACTCGACCTTGGTGGGGGGGGAAGGAAGGGAGGGAGGAAGCGAAG
CGGTGGGTGCGTTTTTGAGAAGGTTTTGTTGCTTGAAGGCTGAGAGGTTT
GAAACGGAGGGGATGGGGGACGAAGGGGTGGCGCGCCGGAGGGAGCTGGT
TGTGAAGCTGTTGATCAAGGAGAAGGAGGCGGTAAGGTTCTACAAGCACA
ACGCTGTGGCTTATATGAAGGCGTTGGCGAATCGGTTGGATGCCGCAGCG
GCGATGGGAGGTGGGAAGGGAGGGAACGACGGGAAAGATGTGTTGCCGTT
GTCGCTGCTTGAGGAGGAGGCGGAGGCGTTGGAAAGCGCGTTGACAAAGT
ACCCGGAAGGAAACGTTGGGGGAGTCCCTGCCCAGTTTTTGAAGTACTCG
AGCGTGGGGCTTGACCTGGATCAGGATGGATTGGAGGTCGTGTCAGAGAG
CGGGGAGGGAGGCGAAGGGGAAGAGGGGGCAGTGTCGGACGGGAAGGAAG
GTGGGAGAAGGAGGTCGACGGTGAGAGAGTGTATAGAGGTGATGGATGAT
TAA
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Synonyms
Publications