jgi.p|Nanoce1779_2|125189, mRNA_6708 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|125189
Unique NamemRNA_6708
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1003
Alignment locationscaffold_18:497285..498287 +

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Properties
Property NameValue
TranscriptId125275
TrackFilteredModels2
ProteinId125189
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:497285..498287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|125189gene_6708Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|125189mRNA_6708-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6708CDS_6708Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6708 ID=mRNA_6708|Name=jgi.p|Nanoce1779_2|125189|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp
GGGAGTCATAAAAATCAAGCATATTCAATCGCAATCGAGTGCTCGCCAAA
CAAGTGTCCGTTTATGAGCGAGAACATAGACAGGATGAAGTCTCTTATCA
TTAGGTCTGCACCTTTATATATATCGTCTGAGGAAAGATGTGGTAGCTGC
CCGCCATGCCCAGTGTGCAGCCGTGTACAGGCCATCGCGAGCTGTGTTGT
CATCCCCCCCCGTTCCGATCTCCACAATGTTTGGGATTGACGGCGCTTGG
AAATCCACTTTAACGAGACTCATCCTCGAAGCCTGGGAGAACGACGGCAG
GCTGCTACCGAGCTCGGACAACCACAGCAGCAACCACAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGC
GGGAGCAGCGGCACCAAGGGCGTGTGGCATGGTCTCGACGGAGCTCCACC
TTCACTTAGCAGCCACTTGCTGGGACTGGCCCACCTCCGCAGTCGTCCTA
GGCCTAGACCTTTTGCACCCCTCCTTTTCCATGCAATTTCAGCCACAGCA
GTCGGAGGGGCTGCGGGAGCAGGAGGAGCACCAGCAGCCTTATCACCCGC
CACCTCCCCACCCCCTCCCCCTGCTCGGCGAGTGGGGTACTCTCCTCCCT
CTTTCCTCCCTTTACTCCATGCCCTTCGGGAAGCTTTCTCAAGGGCAAGA
AAAATTGGCTGTGATTGCTCGAGCTATGATCATTTTTGATTAGGGTTGTC
AGGGGTTGGACAGCAAGCATCGGACATTGGTCTTGTCTTTGTTGGAGAAC
ATCGCCAACTCGGCGTCTTCTTGGTTGACGATGCTGTACGTGCGTCATCA
CGAGGATGACGCATTGGATAAGGTAATACGCATGTGTTATAGCTGGAGAA
GGGTCATGTGGCGTTTGTCGTTTCTGGAGACGCGTGGAAGAAGGTGGATG
AAGGGAGGAGGGAGAGAGAAGCGATGGGTGAGGATGGAGAATAAAGGAGT
GAC
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protein sequence of jgi.p|Nanoce1779_2|125189

>mRNA_6708-protein ID=mRNA_6708-protein|Name=jgi.p|Nanoce1779_2|125189|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MFGIDGAWKSTLTRLILEAWENDGRLLPSSDNHSSNHNSSSSSSSSSSSS
SNNNNNNSGSSGTKGVWHGLDGAPPSLSSHLLGLAHLRSRPRPRPFAPLL
FHAISATAVGGAAGAGGAPAALSPATSPPPPPARRVGYSPPSFLPLLHAL
REAFSRARKIGCDCSSYDHF*
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mRNA from alignment at scaffold_18:497285..498287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6708 ID=mRNA_6708|Name=jgi.p|Nanoce1779_2|125189|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp|location=Sequence derived from alignment at scaffold_18:497285..498287+ (Nannochloropsis oceanica)
GGGAGTCATAAAAATCAAGCATATTCAATCGCAATCGAGTGCTCGCCAAA
CAAGTGTCCGTTTATGAGCGAGAACATAGACAGGATGAAGTCTCTTATCA
TTAGGTCTGCACCTTTATATATATCGTCTGAGGAAAGATGTGGTAGCTGC
CCGCCATGCCCAGTGTGCAGCCGTGTACAGGCCATCGCGAGCTGTGTTGT
CATCCCCCCCCGTTCCGATCTCCACAATGTTTGGGATTGACGGCGCTTGG
AAATCCACTTTAACGAGACTCATCCTCGAAGCCTGGGAGAACGACGGCAG
GCTGCTACCGAGCTCGGACAACCACAGCAGCAACCACAACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGC
GGGAGCAGCGGCACCAAGGGCGTGTGGCATGGTCTCGACGGAGCTCCACC
TTCACTTAGCAGCCACTTGCTGGGACTGGCCCACCTCCGCAGTCGTCCTA
GGCCTAGACCTTTTGCACCCCTCCTTTTCCATGCAATTTCAGCCACAGCA
GTCGGAGGGGCTGCGGGAGCAGGAGGAGCACCAGCAGCCTTATCACCCGC
CACCTCCCCACCCCCTCCCCCTGCTCGGCGAGTGGGGTACTCTCCTCCCT
CTTTCCTCCCTTTACTCCATGCCCTTCGGGAAGCTTTCTCAAGGGCAAGA
AAAATTGGCTGTGATTGCTCGAGCTATGATCATTTTTGATTAGGGTTGTC
AGGGGTTGGACAGCAAGCATCGGACATTGGTCTTGTCTTTGTTGGAGAAC
ATCGCCAACTCGGCGTCTTCTTGGTTGACGATGCTGTACGTGCGTCATCA
CGAGGATGACGCATTGGATAAGGTAATACGCATGTGTTATAGCTGGAGAA
GGGTCATGTGGCGTTTGTCGTTTCTGGAGACGCGTGGAAGAAGGTGGATG
AAGGGAGGAGGGAGAGAGAAGCGATGGGTGAGGATGGAGAATAAAGGAGT
GAC
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Coding sequence (CDS) from alignment at scaffold_18:497285..498287+

>mRNA_6708 ID=mRNA_6708|Name=jgi.p|Nanoce1779_2|125189|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_18:497285..498287+ (Nannochloropsis oceanica)
ATGTTTGGGATTGACGGCGCTTGGAAATCCACTTTAACGAGACTCATCCT
CGAAGCCTGGGAGAACGACGGCAGGCTGCTACCGAGCTCGGACAACCACA
GCAGCAACCACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAACAACAACAGCGGGAGCAGCGGCACCAAGGGCGTGTG
GCATGGTCTCGACGGAGCTCCACCTTCACTTAGCAGCCACTTGCTGGGAC
TGGCCCACCTCCGCAGTCGTCCTAGGCCTAGACCTTTTGCACCCCTCCTT
TTCCATGCAATTTCAGCCACAGCAGTCGGAGGGGCTGCGGGAGCAGGAGG
AGCACCAGCAGCCTTATCACCCGCCACCTCCCCACCCCCTCCCCCTGCTC
GGCGAGTGGGGTACTCTCCTCCCTCTTTCCTCCCTTTACTCCATGCCCTT
CGGGAAGCTTTCTCAAGGGCAAGAAAAATTGGCTGTGATTGCTCGAGCTA
TGATCATTTTTGA
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Synonyms
Publications