jgi.p|Nanoce1779_2|558293, mRNA_6701 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558293
Unique Name	mRNA_6701
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1496
Alignment location	scaffold_18:478713..480208 +

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Properties


Property Name	Value
TranscriptId	558379
Track	FilteredModels2
ProteinId	558293

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:478713..480208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558293	gene_6701	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558293	mRNA_6701-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6701	CDS_6701	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:478713..480208+
coding sequence from alignment at scaffold_18:478713..480208+

mRNA sequence

>mRNA_6701 ID=mRNA_6701|Name=jgi.p|Nanoce1779_2|558293|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp
AGCGATGACGGATCGCCGACCCACATATCGTTCGTCTTGCCTGTCTCACG
CGCGCCACACCACCAATTCCACGACACAGCTGGCCTTTACCAGCTGATGG
AGAAGGAAAAAGAGGACGGCTACAACACGCAGACAGCACAAGCGCAAGCC
CCAGCATCATCATCGTCATCCTCCTTCTCCGCCTCCCCCTCGTCCTCCTC
AACGAACAAAGCTGCCGCTGCCAGCGAGGCACCCACACCACCACCAGGCC
AATCTAACGATGACGCCCGCGCGACTTCCCAGGCTGCTGCTGTCGATACC
TCTACCTCGGTGTCCCGCATCATTTATGGCAAGGAAGTGCCCAGCGAAAA
CGACGAGATCCAGTACAAATGGGGGGCCATCTTCTACAACTATTCCCCGG
CCCAACGCGCCCTACTGGCCTTGGATGAGGTCTCCATGTACAGCATCACG
GACACGCGCTCAGCCAACAACACTTCGCGGATTTTGCAGCAACTTGTGGG
GGACCGAGCCGTGATCACTGATGGCTGCGCTGCTGCGGGCGGGAACGTCC
TGTCGTTTGCGCAGCATTTCCGCCAGGTCCAAGCCGTGGAGCTCGACCCG
CAGCGGTTCAGCCTATTAGAACACAATGTGAAGGCCTTGGGATTAACTGA
TACTGTCACGACGTATCGCGGTGATTTTCTGGAGAAGTTAAAGGAGTTGA
AACAAGATGTAGTGTTCCTCGATCCGCCCTGGGGAGGAAAGTCGTACGCT
GAGAATGACATGGTAGATTTGACCTTCGGGGACCTCCCTTTATCTCAGCT
CTGTGAGCGTCTCAAGCCCCATGCACTATACATCGCGTTGAAACTTCCGT
TGAATTTCAATTTTGAAGGGTTCAGGCAGGCGATTACTTCGTCGGTGGTA
AGGGCGGATGATCGATGCGCACGGAAACAGCTCCTGGTTATCTTGGACAC
GACGGGGAAAGTCCACCCACCGTTTCAGAGGCGAGAAAAAGGAGGAAGAG
GAGGAGGGGAAGGAAGAGGAGGACAGGGGAATGGACGGGGAGGGTATAAG
CGGGAGAGAGATGGTAATCAGGCGCCTTGGACATTGAAACGCAAGACAAC
GTAAGAAATGAATGAATGAAAAGAAAAAGAAAAGACAGAAGGAAATAGGA
CGGTGTTAACAGCTGCAGAGGATAGCTGGTTCATGATTTCTAAAGCACCC
GTAAAAGCAGGTAAGGAGGGAATCTAAAATATTATATTGTTCACTTTCTT
TGATACAGTGCCCATTCACACATTACTCTCACACATATGTACCTCTTACT
GCATACACACCATCCTCCTTTCTTCTCCTTTTCCTCCATGCTTACAACAT
TCCCCCTGACAAAACTTCCACTATTACGACCAAAGAGCCTCGTCATCCTC
CAACGCCTCATCCAACAAATGGTGTGCCGGAGTTTCCCCCCTCCCTCCTC
CCCCCCCTTCGAATAGAAACCCCTCCCCTCCTCTTCTCCCCTCCCC

protein sequence of jgi.p|Nanoce1779_2|558293

>mRNA_6701-protein ID=mRNA_6701-protein|Name=jgi.p|Nanoce1779_2|558293|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MEKEKEDGYNTQTAQAQAPASSSSSSFSASPSSSSTNKAAAASEAPTPPP
GQSNDDARATSQAAAVDTSTSVSRIIYGKEVPSENDEIQYKWGAIFYNYS
PAQRALLALDEVSMYSITDTRSANNTSRILQQLVGDRAVITDGCAAAGGN
VLSFAQHFRQVQAVELDPQRFSLLEHNVKALGLTDTVTTYRGDFLEKLKE
LKQDVVFLDPPWGGKSYAENDMVDLTFGDLPLSQLCERLKPHALYIALKL
PLNFNFEGFRQAITSSVVRADDRCARKQLLVILDTTGKVHPPFQRREKGG
RGGGEGRGGQGNGRGGYKRERDGNQAPWTLKRKTT*

mRNA from alignment at scaffold_18:478713..480208+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6701 ID=mRNA_6701|Name=jgi.p|Nanoce1779_2|558293|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp|location=Sequence derived from alignment at scaffold_18:478713..480208+ (Nannochloropsis oceanica)
AGCGATGACGGATCGCCGACCCACATATCGTTCGTCTTGCCTGTCTCACG
CGCGCCACACCACCAATTCCACGACACAGCTGGCCTTTACCAGCTGATGG
AGAAGGAAAAAGAGGACGGCTACAACACGCAGACAGCACAAGCGCAAGCC
CCAGCATCATCATCGTCATCCTCCTTCTCCGCCTCCCCCTCGTCCTCCTC
AACGAACAAAGCTGCCGCTGCCAGCGAGGCACCCACACCACCACCAGGCC
AATCTAACGATGACGCCCGCGCGACTTCCCAGGCTGCTGCTGTCGATACC
TCTACCTCGGTGTCCCGCATCATTTATGGCAAGGAAGTGCCCAGCGAAAA
CGACGAGATCCAGTACAAATGGGGGGCCATCTTCTACAACTATTCCCCGG
CCCAACGCGCCCTACTGGCCTTGGATGAGGTCTCCATGTACAGCATCACG
GACACGCGCTCAGCCAACAACACTTCGCGGATTTTGCAGCAACTTGTGGG
GGACCGAGCCGTGATCACTGATGGCTGCGCTGCTGCGGGCGGGAACGTCC
TGTCGTTTGCGCAGCATTTCCGCCAGGTCCAAGCCGTGGAGCTCGACCCG
CAGCGGTTCAGCCTATTAGAACACAATGTGAAGGCCTTGGGATTAACTGA
TACTGTCACGACGTATCGCGGTGATTTTCTGGAGAAGTTAAAGGAGTTGA
AACAAGATGTAGTGTTCCTCGATCCGCCCTGGGGAGGAAAGTCGTACGCT
GAGAATGACATGGTAGATTTGACCTTCGGGGACCTCCCTTTATCTCAGCT
CTGTGAGCGTCTCAAGCCCCATGCACTATACATCGCGTTGAAACTTCCGT
TGAATTTCAATTTTGAAGGGTTCAGGCAGGCGATTACTTCGTCGGTGGTA
AGGGCGGATGATCGATGCGCACGGAAACAGCTCCTGGTTATCTTGGACAC
GACGGGGAAAGTCCACCCACCGTTTCAGAGGCGAGAAAAAGGAGGAAGAG
GAGGAGGGGAAGGAAGAGGAGGACAGGGGAATGGACGGGGAGGGTATAAG
CGGGAGAGAGATGGTAATCAGGCGCCTTGGACATTGAAACGCAAGACAAC
GTAAGAAATGAATGAATGAAAAGAAAAAGAAAAGACAGAAGGAAATAGGA
CGGTGTTAACAGCTGCAGAGGATAGCTGGTTCATGATTTCTAAAGCACCC
GTAAAAGCAGGTAAGGAGGGAATCTAAAATATTATATTGTTCACTTTCTT
TGATACAGTGCCCATTCACACATTACTCTCACACATATGTACCTCTTACT
GCATACACACCATCCTCCTTTCTTCTCCTTTTCCTCCATGCTTACAACAT
TCCCCCTGACAAAACTTCCACTATTACGACCAAAGAGCCTCGTCATCCTC
CAACGCCTCATCCAACAAATGGTGTGCCGGAGTTTCCCCCCTCCCTCCTC
CCCCCCCTTCGAATAGAAACCCCTCCCCTCCTCTTCTCCCCTCCCC

Coding sequence (CDS) from alignment at scaffold_18:478713..480208+

>mRNA_6701 ID=mRNA_6701|Name=jgi.p|Nanoce1779_2|558293|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_18:478713..480208+ (Nannochloropsis oceanica)
ATGGAGAAGGAAAAAGAGGACGGCTACAACACGCAGACAGCACAAGCGCA
AGCCCCAGCATCATCATCGTCATCCTCCTTCTCCGCCTCCCCCTCGTCCT
CCTCAACGAACAAAGCTGCCGCTGCCAGCGAGGCACCCACACCACCACCA
GGCCAATCTAACGATGACGCCCGCGCGACTTCCCAGGCTGCTGCTGTCGA
TACCTCTACCTCGGTGTCCCGCATCATTTATGGCAAGGAAGTGCCCAGCG
AAAACGACGAGATCCAGTACAAATGGGGGGCCATCTTCTACAACTATTCC
CCGGCCCAACGCGCCCTACTGGCCTTGGATGAGGTCTCCATGTACAGCAT
CACGGACACGCGCTCAGCCAACAACACTTCGCGGATTTTGCAGCAACTTG
TGGGGGACCGAGCCGTGATCACTGATGGCTGCGCTGCTGCGGGCGGGAAC
GTCCTGTCGTTTGCGCAGCATTTCCGCCAGGTCCAAGCCGTGGAGCTCGA
CCCGCAGCGGTTCAGCCTATTAGAACACAATGTGAAGGCCTTGGGATTAA
CTGATACTGTCACGACGTATCGCGGTGATTTTCTGGAGAAGTTAAAGGAG
TTGAAACAAGATGTAGTGTTCCTCGATCCGCCCTGGGGAGGAAAGTCGTA
CGCTGAGAATGACATGGTAGATTTGACCTTCGGGGACCTCCCTTTATCTC
AGCTCTGTGAGCGTCTCAAGCCCCATGCACTATACATCGCGTTGAAACTT
CCGTTGAATTTCAATTTTGAAGGGTTCAGGCAGGCGATTACTTCGTCGGT
GGTAAGGGCGGATGATCGATGCGCACGGAAACAGCTCCTGGTTATCTTGG
ACACGACGGGGAAAGTCCACCCACCGTTTCAGAGGCGAGAAAAAGGAGGA
AGAGGAGGAGGGGAAGGAAGAGGAGGACAGGGGAATGGACGGGGAGGGTA
TAAGCGGGAGAGAGATGGTAATCAGGCGCCTTGGACATTGAAACGCAAGA
CAACGTAA

Synonyms

Publications