jgi.p|Nanoce1779_2|573734, mRNA_670 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573734
Unique NamemRNA_670
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1466
Alignment locationscaffold_2:151626..153326 -

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Properties
Property NameValue
TranscriptId573820
TrackFilteredModels2
ProteinId573734
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:151626..153326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573734gene_670Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573734mRNA_670-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_670CDS_670Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_670 ID=mRNA_670|Name=jgi.p|Nanoce1779_2|573734|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp
CTTGCTGCTGATTTCCTTTCTCCTCTGCACGACCTACATACTTGCTGCCC
AAGCCTCCAGCGGCAGCAGCAGCAGTAGCAGCAGCAAGCCTGCCCCTCCG
CCTGGCCCCCCAACGGCAACAGACAGAGAGATGGCATGCCCCATCGATGA
AGACGTGGCCTTGTCCTCTCGTCGTTGCGCTGGTGCCCGCTTCCTATTTG
AGGAGGTTGTTCAGGACCCTTTGGCCGCGATTCTAGCAGGAGCTGACATA
ATCGAAAGCGAGCGTGCAAGCAAGGCTACCAATGCCGTCTACCCTGTTGT
GGCAATTCGCACCCATTGGATGGACAATAAAATAACAAAGGCATTGACCG
TAGACCCAGAGCTGACGCAAGTGGTGCTCTGTGGCGCAGGGATGGACGCG
CGCGGCCACCGCCTCAAGGAACTCCGGCAATGCCATATCTTTGAACTTGA
CGTGAAACCCGTCCTGGACTACAAGAGCCGAATCCTGGCAAGCGTCACAG
ATCGCTTTCCCTTACTCGCCCGGGGAATGCATCGATTGATCACAGATTTT
TCTGATGACGTCGCATGGGTAAATACTCTAAAGTCCGCAGGCTTTGACCC
GCGCAAAAAAACAATCTGGATCTTAGAAGGCTTTCTTTACTACTTTGAAG
CATCGCGGGCACAGACATTATTACGGGCCATTCAAGCGGAGTCCGCTCCT
GGGAGCATTTTGCTTGCGGATCACATCAATGACTTCACTTTGACCTCCCT
GCGAGAGCAAGCAAGCAACAAGTGGCTCACCAGCACGTTTTCCTCTGCGA
TGGAAGTGCCTGAGACGGCTGTAGCTGATTTGGGGTTTGAGGGCGTGGAG
GTGGTGACGGTGGGAGAGGAAGGAGCGAATTTTGGGTTGTGGGGACTTCC
GGTTGTTCCTCGGAAAGAGAAAAAGGATTTTATGAGGACCTATCTGTTTC
AGGCACGTGTTGGAGGGAAGGGCGAGATGGACAAGAATAGAGATTGAAGG
AATGCGGTGAATGAGGGAGATCATTGAGTGTGCAAAGCGTGTCAATGTGT
GTATATACTCCTGGACCAGAAATTGTATGGTTAGTTAGCCATTTTGGAAT
CTTAGTGCCCTTTCTTTCTTTCTTTTTGTACAGTGTGGTCCTACTGTTTC
ACTCGAATTTGTCTATACATTGAGTGTTTGATACGTCCTCGTTGTCCTCT
GTAAAAGAGCATATGCGTGTAGCACTGAAGTAGTCGATAGCAGGAGCAGT
GGTTGATAGCAGGAGCAGCAGCAGTAGTGACAGCAGCGTCGAGCTATGCC
GCAGGGCTATGGAAAAAAATGGGTCTTTTCTCTCCACTTTTCTTTCGCCC
TGGCCGCGAAGGGAAGATTTAAAAGAAGCAACAATACCGCACGGCAACTT
CTCCCTTTCCCCATTATTTCATGCCCCTTTCCTCCCCTACCTTAAAAATT
AAAATACATTATGGAA
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protein sequence of jgi.p|Nanoce1779_2|573734

>mRNA_670-protein ID=mRNA_670-protein|Name=jgi.p|Nanoce1779_2|573734|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MACPIDEDVALSSRRCAGARFLFEEVVQDPLAAILAGADIIESERASKAT
NAVYPVVAIRTHWMDNKITKALTVDPELTQVVLCGAGMDARGHRLKELRQ
CHIFELDVKPVLDYKSRILASVTDRFPLLARGMHRLITDFSDDVAWVNTL
KSAGFDPRKKTIWILEGFLYYFEASRAQTLLRAIQAESAPGSILLADHIN
DFTLTSLREQASNKWLTSTFSSAMEVPETAVADLGFEGVEVVTVGEEGAN
FGLWGLPVVPRKEKKDFMRTYLFQARVGGKGEMDKNRD*
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mRNA from alignment at scaffold_2:151626..153326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_670 ID=mRNA_670|Name=jgi.p|Nanoce1779_2|573734|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at scaffold_2:151626..153326- (Nannochloropsis oceanica)
CTTGCTGCTGATTTCCTTTCTCCTCTGCACGACCTACATACTTGCTGCCC
AAGCCTCCAGCGGCAGCAGCAGCAGTAGCAGCAGCAAGCCTGCCCCTCCG
CCTGGCCCCCCAACGGCAACAGACAGAGAGATGGCATGCCCCATCGATGA
AGACGTGGCCTTGTCCTCTCGTCGTTGCGCTGGTGCCCGCTTCCTATTTG
AGGAGGTTGTTCAGGACCCTTTGGCCGCGATTCTAGCAGGAGCTGACATA
ATCGAAAGCGAGCGTGCAAGCAAGGCTACCAATGCCGTCTACCCTGTTGT
GGCAATTCGCACCCATTGGATGGACAATAAAATAACAAAGGCATTGACCG
TAGACCCAGAGCTGACGCAAGTGGTGCTCTGTGGCGCAGGGATGGACGCG
CGCGGGTGAGTGTGGGGGGAAGAGGATGACGGGAAGGAAGGAAGACGGAA
CGGCGCGGGGAAATGTACAGCTTGGCGACACATTAAGGCACGCGAAGACA
GGCGCATTCACTATCTATTTCCAGGTCGCGTCTTCTGAGAAGCCCTGAAA
GGACTTCTCAGATCGCTTTCCTTCGCTCGGTCTATTCACTTTCCCTCTCT
CGGTTCCTTCCTTCCTCCCTCCCACCCATTTCCTCCGTAGCCACCGCCTC
AAGGAACTCCGGCAATGCCATATCTTTGAACTTGACGTGAAACCCGTCCT
GGACTACAAGAGCCGAATCCTGGCAAGCGTCACAGATCGCTTTCCCTTAC
TCGCCCGGGGAATGCATCGATTGATCACAGATTTTTCTGATGACGTCGCA
TGGGTAAATACTCTAAAGTCCGCAGGCTTTGACCCGCGCAAAAAAACAAT
CTGGATCTTAGAAGGCTTTCTTTACTACTTTGAAGCATCGCGGGCACAGA
CATTATTACGGGCCATTCAAGCGGAGTCCGCTCCTGGGAGCATTTTGCTT
GCGGATCACATCAATGACTTCACTTTGACCTCCCTGCGAGAGCAAGCAAG
CAACAAGTGGCTCACCAGCACGTTTTCCTCTGCGATGGAAGTGCCTGAGA
CGGCTGTAGCTGATTTGGGGTTTGAGGGCGTGGAGGTGGTGACGGTGGGA
GAGGAAGGAGCGAATTTTGGGTTGTGGGGACTTCCGGTTGTTCCTCGGAA
AGAGAAAAAGGATTTTATGAGGACCTATCTGTTTCAGGCACGTGTTGGAG
GGAAGGGCGAGATGGACAAGAATAGAGATTGAAGGAATGCGGTGAATGAG
GGAGATCATTGAGTGTGCAAAGCGTGTCAATGTGTGTATATACTCCTGGA
CCAGAAATTGTATGGTTAGTTAGCCATTTTGGAATCTTAGTGCCCTTTCT
TTCTTTCTTTTTGTACAGTGTGGTCCTACTGTTTCACTCGAATTTGTCTA
TACATTGAGTGTTTGATACGTCCTCGTTGTCCTCTGTAAAAGAGCATATG
CGTGTAGCACTGAAGTAGTCGATAGCAGGAGCAGTGGTTGATAGCAGGAG
CAGCAGCAGTAGTGACAGCAGCGTCGAGCTATGCCGCAGGGCTATGGAAA
AAAATGGGTCTTTTCTCTCCACTTTTCTTTCGCCCTGGCCGCGAAGGGAA
GATTTAAAAGAAGCAACAATACCGCACGGCAACTTCTCCCTTTCCCCATT
ATTTCATGCCCCTTTCCTCCCCTACCTTAAAAATTAAAATACATTATGGA
A
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Coding sequence (CDS) from alignment at scaffold_2:151626..153326-

>mRNA_670 ID=mRNA_670|Name=jgi.p|Nanoce1779_2|573734|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_2:151626..153326- (Nannochloropsis oceanica)
CCACCGCCTCAAGGAACTCCGGCAATGCCATATCTTTGAACTTGACGTGA
AACCCGTCCTGGACTACAAGAGCCGAATCCTGGCAAGCGTCACAGATCGC
TTTCCCTTACTCGCCCGGGGAATGCATCGATTGATCACAGATTTTTCTGA
TGACGTCGCATGGGTAAATACTCTAAAGTCCGCAGGCTTTGACCCGCGCA
AAAAAACAATCTGGATCTTAGAAGGCTTTCTTTACTACTTTGAAGCATCG
CGGGCACAGACATTATTACGGGCCATTCAAGCGGAGTCCGCTCCTGGGAG
CATTTTGCTTGCGGATCACATCAATGACTTCACTTTGACCTCCCTGCGAG
AGCAAGCAAGCAACAAGTGGCTCACCAGCACGTTTTCCTCTGCGATGGAA
GTGCCTGAGACGGCTGTAGCTGATTTGGGGTTTGAGGGCGTGGAGGTGGT
GACGGTGGGAGAGGAAGGAGCGAATTTTGGGTTGTGGGGACTTCCGGTTG
TTCCTCGGAAAGAGAAAAAGGATTTTATGAGGACCTATCTGTTTCAGGCA
CGTGTTGGAGGGAAGGGCGAGATGGACAAGAATAGAGATTGAATGGCATG
CCCCATCGATGAAGACGTGGCCTTGTCCTCTCGTCGTTGCGCTGGTGCCC
GCTTCCTATTTGAGGAGGTTGTTCAGGACCCTTTGGCCGCGATTCTAGCA
GGAGCTGACATAATCGAAAGCGAGCGTGCAAGCAAGGCTACCAATGCCGT
CTACCCTGTTGTGGCAATTCGCACCCATTGGATGGACAATAAAATAACAA
AGGCATTGACCGTAGACCCAGAGCTGACGCAAGTGGTGCTCTGTGGCGCA
GGGATGGACGCGCGCGGCCACCGCCTCAAGGAACTCCGGCAATGCCATAT
CTTTGAACTTGACGTGAAACCCGTCCTGGACTACAAGAGCCGAATCCTGG
CAAGCGTCACAGATCGCTTTCCCTTACTCGCCCGGGGAATGCATCGATTG
ATCACAGATTTTTCTGATGACGTCGCATGGGTAAATACTCTAAAGTCCGC
AGGCTTTGACCCGCGCAAAAAAACAATCTGGATCTTAGAAGGCTTTCTTT
ACTACTTTGAAGCATCGCGGGCACAGACATTATTACGGGCCATTCAAGCG
GAGTCCGCTCCTGGGAGCATTTTGCTTGCGGATCACATCAATGACTTCAC
TTTGACCTCCCTGCGAGAGCAAGCAAGCAACAAGTGGCTCACCAGCACGT
TTTCCTCTGCGATGGAAGTGCCTGAGACGGCTGTAGCTGATTTGGGGTTT
GAGGGCGTGGAGGTGGTGACGGTGGGAGAGGAAGGAGCGAATTTTGGGTT
GTGGGGACTTCCGGTTGTTCCTCGGAAAGAGAAAAAGGATTTTATGAGGA
CCTATCTGTTTCAGGCACGTGTTGGAGGGAAGGGCGAGATGGACAAGAAT
AGAGATTGAATGGCATGCCCCATCGATGAAGACGTGGCCTTGTCCTCTCG
TCGTTGCGCTGGTGCCCGCTTCCTATTTGAGGAGGTTGTTCAGGACCCTT
TGGCCGCGATTCTAGCAGGAGCTGACATAATCGAAAGCGAGCGTGCAAGC
AAGGCTACCAATGCCGTCTACCCTGTTGTGGCAATTCGCACCCATTGGAT
GGACAATAAAATAACAAAGGCATTGACCGTAGACCCAGAGCTGACGCAAG
TGGTGCTCTGTGGCGCAGGGATGGACGCGCGCGG
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Synonyms
Publications