jgi.p|Nanoce1779_2|597754, mRNA_6699 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597754
Unique NamemRNA_6699
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1052
Alignment locationscaffold_18:473729..475891 +

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Properties
Property NameValue
TranscriptId597840
TrackFilteredModels2
ProteinId597754
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:473729..475891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597754gene_6699Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597754mRNA_6699-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6699CDS_6699Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6699 ID=mRNA_6699|Name=jgi.p|Nanoce1779_2|597754|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
ACAGAGACCTAGCACTTTCAGACACTCCCTATGCTAGACGAGTGGATAGA
GACGCTCCAACGCGGGGAATGCATCAAGGAGCACGAACTGAAGAAGCTAT
GTAGTCTGGTGAAAGAAATTCTTATCGAAGAATGCAACGTCCAACCAGTA
CGGAGCCCCGTCACGGTCTGTGGGGACATCCACGGCCAGTTTTACGACCT
ACTCAAGCTCTTCGCCTGCGGGGGGGAAGTGCCTGAGACGAGCTACATTT
TCATGGGGGACTTTGTGGACCGAGGGCACAACAGCGTGGAAACCTTGACA
TTACTGCTGTGTTTAAAGGCGCGGTATCCCCAACACATGACCTTGTTGCG
CGGGAATCATGAGTCGCGGCAGATCACACAGGTGTACGGTTTCTACGAGG
AGTGCATGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGAC
GTGTTTGACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTG
CGTGCATGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGATCCGCA
CCATCGACCGTGTCCAGGAAATCCCGCACGACGGCCCATTTTGTGATATG
ATGTGGAGTGACCCCGAGGACATAATTGACCCGTGGGTGATCTCGCCACG
GGGTGCGGGGTATTTATTCGGAAGCAAGGTTACGCAGGCTTTCAATCACG
TGAACGGCCTGGAGCTCATCTGCCGGGCACATCAACTAGTTATGGAAGGC
TTCAAATACCATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCC
CAACTACTGCTATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACG
AGAACCTGAACCGAGAGTTCAAGATGTTCAAGGAGGTGCCGGAGAGCAAC
ATGGCGGAGGAACGGAGAAACCTCGTACCTTACTTCCTGTAAAGTCATGC
AAGGATAGGGAGGAAAGAAGGAGGGACGGAGGGACGGAGGGGCGAGGACA
ATGATTTTGCAAGGAGGGAGAAGTGGGGGTGGTGTGTACACAGGAGAGAT
CA
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protein sequence of jgi.p|Nanoce1779_2|597754

>mRNA_6699-protein ID=mRNA_6699-protein|Name=jgi.p|Nanoce1779_2|597754|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MLDEWIETLQRGECIKEHELKKLCSLVKEILIEECNVQPVRSPVTVCGDI
HGQFYDLLKLFACGGEVPETSYIFMGDFVDRGHNSVETLTLLLCLKARYP
QHMTLLRGNHESRQITQVYGFYEECMRKYGNANAWKYCVDVFDYLNLAAL
IDGQVLCVHGGLSPEIRTVDQIRTIDRVQEIPHDGPFCDMMWSDPEDIID
PWVISPRGAGYLFGSKVTQAFNHVNGLELICRAHQLVMEGFKYHFPERSL
VTVWSAPNYCYRCGNVAAVLAFDENLNREFKMFKEVPESNMAEERRNLVP
YFL*
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mRNA from alignment at scaffold_18:473729..475891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6699 ID=mRNA_6699|Name=jgi.p|Nanoce1779_2|597754|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp|location=Sequence derived from alignment at scaffold_18:473729..475891+ (Nannochloropsis oceanica)
ACAGAGACCTAGCACTTTCAGACACTCCCTATGCTAGACGAGTGGATAGA GACGCTCCAACGCGGGGAATGCATCAAGGAGCACGAACTGAAGAAGCTAT GTAGTCTGGTAAGTCCGAGCGTCTGCTTGCTTGTTGCCTTCCCGCTACTC CCTCTGTGCCCTCGTCACCTCTGTTCGTCGTGGTCCACCACATCTGGCCT CGTCTCCCTCCAGGCTAGTGCATACCGTGAATATCCGCTTCCTTTATATT GTTATCCTCAGCTGCTGCACAAAGCTAACCGAAGCCTCTATCCATTGCTC CTTCCAACCCAACATCTCCTCCCCCCCGCCTTCCCGTCATCCTTCCCTAC ATACCCATTCTAACCCTGGCGGCTCCCTCCTCTTCTCTCCCCGCACAAAC CCAAAACAAAGGTGAAAGAAATTCTTATCGAAGAATGCAACGTCCAACCA GTACGGAGCCCCGTCACGGTCTGTGGGGACATCCACGGCCAGTTTTACGA CCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGTGCCTGAGACGAGCTACA TTTTCATGGGGGACTTTGTGGACCGAGGGCACAACAGCGTGGAAACCTTG ACATTACTGCTGTGTTTAAAGGCGCGGTATCCCCAACACATGACCTTGTT GCGCGGGAATCATGAGTCGCGGCAGATCACACAGGTAAAGGGGGAGGGGG GCGGGAGGGATGGAAAGGACGCTGTTTTTTTGTGCGAAATGTGGACATAT GTCGGTACGATAATTTCCGAATCCATTTCTCCATTCCTCCCTCCTTTCCC CCCCCCCCCTCCAGGTGTACGGTTTCTACGAGGAGTGCATGCGCAAGTAC GGCAATGCCAACGCCTGGAAATATTGCGTGGACGTGTTTGACTACCTCAA CCTGGCCGCATTGATAGATGGGCAGGTCCTGTGCGTGCATGGTGGGCTCT CTCCAGAGATTAGGACGGTGGATCAGGTATAAGCCTTGCCCTTAACCCTC CCGCCCTTCATTGACTCCCTTCCTTCTTCTGGTCTTGTCTTTTTCCTTCT TTATCTCACCTCAGCCCACACACCTTGCCAGTTCTCTCTTTCGCCACGTA TCTCTCTTGATTTTTCATGACTTTCGATCAACAACATGCGCCTTTCCCCT CCTGGTTGCTCAATACATCTCAATATATCCTCTCTTCCCGCATTTACTCC CGCTCTCGTTCAGATCCGCACCATCGACCGTGTCCAGGAAATCCCGCACG ACGGCCCATTTTGTGATATGATGTGGAGTGACCCCGAGGACATAATTGAC CCGTGGGTGATCTCGCCACGGTGAGGGAGGGAGGGAAGGGAGGGAGAAAA GGAGGGAAGGAGGGGCATGGATGGCTGGAGGTCCACGACCTGTGTAATAA AAGAGGAAGGAGGAGAAAAGAGGACAAAGATCATCACTAGAGCTCATGGT GTTTGTCGTCCTTCCGTTCATGTTTCTGATTACCCTTCTATCCAGGGGTG CGGGGTATTTATTCGGAAGCAAGGTTACGCAGGCTTTCAATCACGTGAAC GGCCTGGAGCTCATCTGCCGGGCACATCAACTAGTTATGGAAGGTGAGTA GCCTCCACCTCCCATCTAATTTCCTCCTTTCTTCCCTTTCTCCCTCCATT CATTTTTTCTGGTTGACTCGTTGCAGCGTGATAACGATAGTTACCCCTGT AATCCCGGCATCTGATCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC TCCCTCCCTCCCTCCCTCGCAGGCTTCAAATACCATTTCCCCGAGCGCTC GCTCGTCACGGTCTGGTCTGCTCCCAACTACTGCTATCGATGCGGTAATG TCGCGGCTGTGCTTGCCTTTGACGAGAACCTGAACCGAGAGTTCAAGATG TTCAAGGGTAAGGAGGGAGGGAGAGAGACTTATTACCGTTTTTTCGATCG GTCGCCTCACTCTTTCCTTCCCTCCCTACCTCCCTTTCCTACAGAGGTGC CGGAGAGCAACATGGCGGAGGAACGGAGAAACCTCGTACCTTACTTCCTG TAAAGTCATGCAAGGATAGGGAGGAAAGAAGGAGGGACGGAGGGACGGAG GGGCGAGGACAATGATTTTGCAAGGAGGGAGAAGTGGGGGTGGTGTGTAC ACAGGAGAGATCA
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Coding sequence (CDS) from alignment at scaffold_18:473729..475891+

>mRNA_6699 ID=mRNA_6699|Name=jgi.p|Nanoce1779_2|597754|organism=Nannochloropsis oceanica|type=CDS|length=6384bp|location=Sequence derived from alignment at scaffold_18:473729..475891+ (Nannochloropsis oceanica)
ATGCTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAATGCATCAAGGA
GCACGAACTGAAGAAGCTATGTAGTCTGGTGAAAGAAATTCTTATCGAAG
AATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATC
CACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGT
GCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGACCGAGGGCACA
ACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCC
CAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGCAGATCACACA
GGTGTACGGTTTCTACGAGGAGTGCATGCGCAAGTACGGCAATGCCAACG
CCTGGAAATATTGCGTGGACGTGTTTGACTACCTCAACCTGGCCGCATTG
ATAGATGGGCAGGTCCTGTGCGTGCATGGTGGGCTCTCTCCAGAGATTAG
GACGGTGGATCAGATCCGCACCATCGACCGTGTCCAGGAAATCCCGCACG
ACGGCCCATTTTGTGATATGATGTGGAGTGACCCCGAGGACATAATTGAC
CCGTGGGTGATCTCGCCACGGGGTGCGGGGTATTTATTCGGAAGCAAGGT
TACGCAGGCTTTCAATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCAC
ATCAACTAGTTATGGAAGGCTTCAAATACCATTTCCCCGAGCGCTCGCTC
GTCACGGTCTGGTCTGCTCCCAACTACTGCTATCGATGCGGTAATGTCGC
GGCTGTGCTTGCCTTTGACGAGAACCTGAACCGAGAGTTCAAGATGTTCA
AGGAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAACCTCGTACCT
TACTTCCTGTAAATGCTAGACGAGTGGATAGAGACGCTCCAACGCGGGGA
ATGCATCAAGGAGCACGAACTGAAGAAGCTATGTAGTCTGGTGAAAGAAA
TTCTTATCGAAGAATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTC
TGTGGGGACATCCACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTG
CGGGGGGGAAGTGCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGG
ACCGAGGGCACAACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAG
GCGCGGTATCCCCAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCG
GCAGATCACACAGGTGTACGGTTTCTACGAGGAGTGCATGCGCAAGTACG
GCAATGCCAACGCCTGGAAATATTGCGTGGACGTGTTTGACTACCTCAAC
CTGGCCGCATTGATAGATGGGCAGGTCCTGTGCGTGCATGGTGGGCTCTC
TCCAGAGATTAGGACGGTGGATCAGATCCGCACCATCGACCGTGTCCAGG
AAATCCCGCACGACGGCCCATTTTGTGATATGATGTGGAGTGACCCCGAG
GACATAATTGACCCGTGGGTGATCTCGCCACGGGGTGCGGGGTATTTATT
CGGAAGCAAGGTTACGCAGGCTTTCAATCACGTGAACGGCCTGGAGCTCA
TCTGCCGGGCACATCAACTAGTTATGGAAGGCTTCAAATACCATTTCCCC
GAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCAACTACTGCTATCGATG
CGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAGAACCTGAACCGAGAGT
TCAAGATGTTCAAGGAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGA
AACCTCGTACCTTACTTCCTGTAAATGCTAGACGAGTGGATAGAGACGCT
CCAACGCGGGGAATGCATCAAGGAGCACGAACTGAAGAAGCTATGTAGTC
TGGTGAAAGAAATTCTTATCGAAGAATGCAACGTCCAACCAGTACGGAGC
CCCGTCACGGTCTGTGGGGACATCCACGGCCAGTTTTACGACCTACTCAA
GCTCTTCGCCTGCGGGGGGGAAGTGCCTGAGACGAGCTACATTTTCATGG
GGGACTTTGTGGACCGAGGGCACAACAGCGTGGAAACCTTGACATTACTG
CTGTGTTTAAAGGCGCGGTATCCCCAACACATGACCTTGTTGCGCGGGAA
TCATGAGTCGCGGCAGATCACACAGGTGTACGGTTTCTACGAGGAGTGCA
TGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGACGTGTTT
GACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTGCGTGCA
TGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGATCCGCACCATCG
ACCGTGTCCAGGAAATCCCGCACGACGGCCCATTTTGTGATATGATGTGG
AGTGACCCCGAGGACATAATTGACCCGTGGGTGATCTCGCCACGGGGTGC
GGGGTATTTATTCGGAAGCAAGGTTACGCAGGCTTTCAATCACGTGAACG
GCCTGGAGCTCATCTGCCGGGCACATCAACTAGTTATGGAAGGCTTCAAA
TACCATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCAACTA
CTGCTATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAGAACC
TGAACCGAGAGTTCAAGATGTTCAAGGAGGTGCCGGAGAGCAACATGGCG
GAGGAACGGAGAAACCTCGTACCTTACTTCCTGTAAATGCTAGACGAGTG
GATAGAGACGCTCCAACGCGGGGAATGCATCAAGGAGCACGAACTGAAGA
AGCTATGTAGTCTGGTGAAAGAAATTCTTATCGAAGAATGCAACGTCCAA
CCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATCCACGGCCAGTTTTA
CGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGTGCCTGAGACGAGCT
ACATTTTCATGGGGGACTTTGTGGACCGAGGGCACAACAGCGTGGAAACC
TTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCCCAACACATGACCTT
GTTGCGCGGGAATCATGAGTCGCGGCAGATCACACAGGTGTACGGTTTCT
ACGAGGAGTGCATGCGCAAGTACGGCAATGCCAACGCCTGGAAATATTGC
GTGGACGTGTTTGACTACCTCAACCTGGCCGCATTGATAGATGGGCAGGT
CCTGTGCGTGCATGGTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGA
TCCGCACCATCGACCGTGTCCAGGAAATCCCGCACGACGGCCCATTTTGT
GATATGATGTGGAGTGACCCCGAGGACATAATTGACCCGTGGGTGATCTC
GCCACGGGGTGCGGGGTATTTATTCGGAAGCAAGGTTACGCAGGCTTTCA
ATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCACATCAACTAGTTATG
GAAGGCTTCAAATACCATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTC
TGCTCCCAACTACTGCTATCGATGCGGTAATGTCGCGGCTGTGCTTGCCT
TTGACGAGAACCTGAACCGAGAGTTCAAGATGTTCAAGGAGGTGCCGGAG
AGCAACATGGCGGAGGAACGGAGAAACCTCGTACCTTACTTCCTGTAAAT
GCTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAATGCATCAAGGAGC
ACGAACTGAAGAAGCTATGTAGTCTGGTGAAAGAAATTCTTATCGAAGAA
TGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTGTGGGGACATCCA
CGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCGGGGGGGAAGTGC
CTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGACCGAGGGCACAAC
AGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGCGCGGTATCCCCA
ACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGCAGATCACACAGG
TGTACGGTTTCTACGAGGAGTGCATGCGCAAGTACGGCAATGCCAACGCC
TGGAAATATTGCGTGGACGTGTTTGACTACCTCAACCTGGCCGCATTGAT
AGATGGGCAGGTCCTGTGCGTGCATGGTGGGCTCTCTCCAGAGATTAGGA
CGGTGGATCAGATCCGCACCATCGACCGTGTCCAGGAAATCCCGCACGAC
GGCCCATTTTGTGATATGATGTGGAGTGACCCCGAGGACATAATTGACCC
GTGGGTGATCTCGCCACGGGGTGCGGGGTATTTATTCGGAAGCAAGGTTA
CGCAGGCTTTCAATCACGTGAACGGCCTGGAGCTCATCTGCCGGGCACAT
CAACTAGTTATGGAAGGCTTCAAATACCATTTCCCCGAGCGCTCGCTCGT
CACGGTCTGGTCTGCTCCCAACTACTGCTATCGATGCGGTAATGTCGCGG
CTGTGCTTGCCTTTGACGAGAACCTGAACCGAGAGTTCAAGATGTTCAAG
GAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAACCTCGTACCTTA
CTTCCTGTAAATGCTAGACGAGTGGATAGAGACGCTCCAACGCGGGGAAT
GCATCAAGGAGCACGAACTGAAGAAGCTATGTAGTCTGGTGAAAGAAATT
CTTATCGAAGAATGCAACGTCCAACCAGTACGGAGCCCCGTCACGGTCTG
TGGGGACATCCACGGCCAGTTTTACGACCTACTCAAGCTCTTCGCCTGCG
GGGGGGAAGTGCCTGAGACGAGCTACATTTTCATGGGGGACTTTGTGGAC
CGAGGGCACAACAGCGTGGAAACCTTGACATTACTGCTGTGTTTAAAGGC
GCGGTATCCCCAACACATGACCTTGTTGCGCGGGAATCATGAGTCGCGGC
AGATCACACAGGTGTACGGTTTCTACGAGGAGTGCATGCGCAAGTACGGC
AATGCCAACGCCTGGAAATATTGCGTGGACGTGTTTGACTACCTCAACCT
GGCCGCATTGATAGATGGGCAGGTCCTGTGCGTGCATGGTGGGCTCTCTC
CAGAGATTAGGACGGTGGATCAGATCCGCACCATCGACCGTGTCCAGGAA
ATCCCGCACGACGGCCCATTTTGTGATATGATGTGGAGTGACCCCGAGGA
CATAATTGACCCGTGGGTGATCTCGCCACGGGGTGCGGGGTATTTATTCG
GAAGCAAGGTTACGCAGGCTTTCAATCACGTGAACGGCCTGGAGCTCATC
TGCCGGGCACATCAACTAGTTATGGAAGGCTTCAAATACCATTTCCCCGA
GCGCTCGCTCGTCACGGTCTGGTCTGCTCCCAACTACTGCTATCGATGCG
GTAATGTCGCGGCTGTGCTTGCCTTTGACGAGAACCTGAACCGAGAGTTC
AAGATGTTCAAGGAGGTGCCGGAGAGCAACATGGCGGAGGAACGGAGAAA
CCTCGTACCTTACTTCCTGTAAATGCTAGACGAGTGGATAGAGACGCTCC
AACGCGGGGAATGCATCAAGGAGCACGAACTGAAGAAGCTATGTAGTCTG
GTGAAAGAAATTCTTATCGAAGAATGCAACGTCCAACCAGTACGGAGCCC
CGTCACGGTCTGTGGGGACATCCACGGCCAGTTTTACGACCTACTCAAGC
TCTTCGCCTGCGGGGGGGAAGTGCCTGAGACGAGCTACATTTTCATGGGG
GACTTTGTGGACCGAGGGCACAACAGCGTGGAAACCTTGACATTACTGCT
GTGTTTAAAGGCGCGGTATCCCCAACACATGACCTTGTTGCGCGGGAATC
ATGAGTCGCGGCAGATCACACAGGTGTACGGTTTCTACGAGGAGTGCATG
CGCAAGTACGGCAATGCCAACGCCTGGAAATATTGCGTGGACGTGTTTGA
CTACCTCAACCTGGCCGCATTGATAGATGGGCAGGTCCTGTGCGTGCATG
GTGGGCTCTCTCCAGAGATTAGGACGGTGGATCAGATCCGCACCATCGAC
CGTGTCCAGGAAATCCCGCACGACGGCCCATTTTGTGATATGATGTGGAG
TGACCCCGAGGACATAATTGACCCGTGGGTGATCTCGCCACGGGGTGCGG
GGTATTTATTCGGAAGCAAGGTTACGCAGGCTTTCAATCACGTGAACGGC
CTGGAGCTCATCTGCCGGGCACATCAACTAGTTATGGAAGGCTTCAAATA
CCATTTCCCCGAGCGCTCGCTCGTCACGGTCTGGTCTGCTCCCAACTACT
GCTATCGATGCGGTAATGTCGCGGCTGTGCTTGCCTTTGACGAGAACCTG
AACCGAGAGTTCAAGATGTTCAAGGAGGTGCCGGAGAGCAACATGGCGGA
GGAACGGAGAAACCTCGTACCTTACTTCCTGTAA
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Synonyms
Publications