jgi.p|Nanoce1779_2|597743, mRNA_6696 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597743
Unique NamemRNA_6696
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length719
Alignment locationscaffold_18:465136..465854 +

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Properties
Property NameValue
TranscriptId597829
TrackFilteredModels2
ProteinId597743
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:465136..465854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597743gene_6696Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597743mRNA_6696-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6696CDS_6696Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6696 ID=mRNA_6696|Name=jgi.p|Nanoce1779_2|597743|organism=Nannochloropsis oceanica|type=mRNA|length=719bp
ACACCAGACAATGAGCATCTACGAAGAGGTGGAGATCGAGGACATGGAGT
TTGAAGAAGATGAGCAACAATACACCTACCCGTGTCCATGTGGGGATAAG
TTTGTCATTACTCTCGCAGAGCTGTGGGATGGGGAGGACGTGGCGCCTTG
CCCCAGCTGCACCCTCCGCATCCGGGTGGTGTACGATGAGGAGTCCTTGC
CGCCACTAAAGCCCGACGATGCAGGGGGATCGACGGGGGCCGGTGTGGCT
GTGTCGGTGCACTAAGCTTGAGGGCCAGAACGACAAATGTTTTAGCCCTA
TCTTTGCCATCGGGTGCATCCCTCTCGTGGCCATGGCTCCACGATTTCTG
ATAGGACACCCTCGCGCGCCATACAAGGAGGCGTTACTAGCTCAAGCTGC
TAATTCACTTATGCAAGGTGGATGTCGGGCGCATGTGGCAATCCTTGTTT
TCAGCACACACCACGCTTATCGAAACTGCGATCAGTAGGTCGTGCCCCTC
TGTCTCGCCGCAGCGGCAGGCCCTGGTGCTGACCGTGCTTTGGCTCATTT
CTTTTGCGACTGCGCTCTTCCCCTACCAACGAGGAGGACAAAACGATTTC
GATAGGCGTGATCTGGTAGCGACCGGAGCACGTATCACGGGGAATTGGAG
GAGGAGGGCGGGAAAGGAGGGAGGGAGGAGGGGTAGAAAGGAGGCAATTG
CCGGTACGCTCGACATCGG
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protein sequence of jgi.p|Nanoce1779_2|597743

>mRNA_6696-protein ID=mRNA_6696-protein|Name=jgi.p|Nanoce1779_2|597743|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MSIYEEVEIEDMEFEEDEQQYTYPCPCGDKFVITLAELWDGEDVAPCPSC
TLRIRVVYDEESLPPLKPDDAGGSTGAGVAVSVH*
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mRNA from alignment at scaffold_18:465136..465854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6696 ID=mRNA_6696|Name=jgi.p|Nanoce1779_2|597743|organism=Nannochloropsis oceanica|type=mRNA|length=719bp|location=Sequence derived from alignment at scaffold_18:465136..465854+ (Nannochloropsis oceanica)
ACACCAGACAATGAGCATCTACGAAGAGGTGGAGATCGAGGACATGGAGT
TTGAAGAAGATGAGCAACAATACACCTACCCGTGTCCATGTGGGGATAAG
TTTGTCATTACTCTCGCAGAGCTGTGGGATGGGGAGGACGTGGCGCCTTG
CCCCAGCTGCACCCTCCGCATCCGGGTGGTGTACGATGAGGAGTCCTTGC
CGCCACTAAAGCCCGACGATGCAGGGGGATCGACGGGGGCCGGTGTGGCT
GTGTCGGTGCACTAAGCTTGAGGGCCAGAACGACAAATGTTTTAGCCCTA
TCTTTGCCATCGGGTGCATCCCTCTCGTGGCCATGGCTCCACGATTTCTG
ATAGGACACCCTCGCGCGCCATACAAGGAGGCGTTACTAGCTCAAGCTGC
TAATTCACTTATGCAAGGTGGATGTCGGGCGCATGTGGCAATCCTTGTTT
TCAGCACACACCACGCTTATCGAAACTGCGATCAGTAGGTCGTGCCCCTC
TGTCTCGCCGCAGCGGCAGGCCCTGGTGCTGACCGTGCTTTGGCTCATTT
CTTTTGCGACTGCGCTCTTCCCCTACCAACGAGGAGGACAAAACGATTTC
GATAGGCGTGATCTGGTAGCGACCGGAGCACGTATCACGGGGAATTGGAG
GAGGAGGGCGGGAAAGGAGGGAGGGAGGAGGGGTAGAAAGGAGGCAATTG
CCGGTACGCTCGACATCGG
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Coding sequence (CDS) from alignment at scaffold_18:465136..465854+

>mRNA_6696 ID=mRNA_6696|Name=jgi.p|Nanoce1779_2|597743|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_18:465136..465854+ (Nannochloropsis oceanica)
ATGAGCATCTACGAAGAGGTGGAGATCGAGGACATGGAGTTTGAAGAAGA
TGAGCAACAATACACCTACCCGTGTCCATGTGGGGATAAGTTTGTCATTA
CTCTCGCAGAGCTGTGGGATGGGGAGGACGTGGCGCCTTGCCCCAGCTGC
ACCCTCCGCATCCGGGTGGTGTACGATGAGGAGTCCTTGCCGCCACTAAA
GCCCGACGATGCAGGGGGATCGACGGGGGCCGGTGTGGCTGTGTCGGTGC
ACTAA
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Synonyms
Publications