jgi.p|Nanoce1779_2|124935, mRNA_6693 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|124935
Unique Name	mRNA_6693
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2105
Alignment location	scaffold_18:451737..453841 -

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Properties


Property Name	Value
TranscriptId	125021
Track	FilteredModels2
ProteinId	124935

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:451737..453841 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|124935	gene_6693	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|124935	mRNA_6693-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6693	CDS_6693	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:451737..453841-
coding sequence from alignment at scaffold_18:451737..453841-

mRNA sequence

>mRNA_6693 ID=mRNA_6693|Name=jgi.p|Nanoce1779_2|124935|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp
AATTATTTAATGGGTCATTTGTTTATTTACATTGAATTACGTCGCATCTA
ACATAGACCTGTCAATCGGTCGTCTTTCCTTGCCGAATGCATATCAATGA
AGTCCACGAATAAGTTATTTAACGACCAACAGTCCTTCATGAATTTGTGA
ATGTAAATGAATTGGACATGGAAACGATGTAGCAAGAGATGATAAAAAGA
CGACATCTGTCACAAAAGCTTGTGGCGAGGGGCTTCGTTTATGCAAACAA
AGGCGTGGCAAGTGTGTGATAATTTGAAGTGTGGTTTGCATTATGGGCCT
ACGGGTGGTAGGGAGGAACGATGGGCTACTTTGCGTGGCTCCAAAAAATC
TGCGGCCACACGTACAAGACCACAGACACACGAAGGACGATGTCGGAGCC
TTTTTCGCTCTAGAAAATACCCGTGGGGCTCGGTAGGGCTTGGTACAGGT
GCATATGGGTGTGCATCATATGCCTTTTGCTTTTTTACAGGGTTTGCTCT
GCTTCTCAAACCCCTCAAAAAGCATCGAACACATGGACAACTCCTCAAAA
AGCAAACCCCTATCCACTACGACGGCCTGGGCTTTACTCGTCGCGTTCAT
GATGATGTACAGAACAGCTTCTGCTGATACTGCTGTTGGGCCGGCAGCGA
GAGCTCCGACCCTGGCTTCGCCTAGTGTCTCCCCCAGCCCTCCCCAGGGG
CTGGACTTCTATTCTAATCCCATACCACACAATACTGCATACACCGGCAG
AAGATGCTGTCGTCCTGCACGTGGACAAGTGAATTGTTTAAACCAGCTAC
TACCACCTCTACGCCTTCGTACCTCAAGGGCCGCGCGCGCAAGAATCGCG
TGAGCCGGTCGGGCCGTCGGGACAAGCCACAATACGAGGCTGCATTGACG
CGTCTACTAGCCGTCACAGAACCCACGTACGCCACAACGTTGCCAATCTC
CCGCTTTCCTATACCCTCCTTATCGTCCAAATGCCCTTCCCATGCCTCCG
TCACGACCCAAGTCGAAGACACGGCCGAGTGGCTGGCATCGGTCAAGGGC
ATCGATCCCGCTGAAGGACACCTGTGCAATCCCCAGCGAGCGCAACGAAA
ACGGCAGCAAGTGGCAAATTTGATGCAGGTATGCCACGCATATATCGGGC
AGCTACTTGCCCTTCAAAGCACCTCTGCAACGCCAGCTCAGCTCAGAGTG
ATTGAATTCTGCTGCGGGAGTGGCCATGTGGCGTTACCTCTGGCAGCACT
CTATCCCTCCGTGCATTTCATTCTTCTCGACAACCGCCCCCCCTCCATCC
GTCAAGCAGAGGAGCGATCTGCTGCGGCCAACTTCCACAATGTAACATGC
CGGTGCGAAGATTTGCACGACTTTCCAGATTCTGAAACGTTTCACCTCGG
CATAGCTCTTCATGCATGCGGTCCTCTGACAGACTTGGTGATGGATTTTT
GCCTGAAGCAACGGGCGGCCTACGTTCTTTGCCCCTGCTGCATTGGCAAG
ATTCAAGCCAGTCCTCTAGAATTTCCTCGATCCTCTTGTTTCCGGGCGCT
TTTACCTGATCGGCGGCAATATGAGTCGATGGCATCTGCTGGGGATCTGA
GCGTGCGACAGTTCTTTTCCAAATCGAAAGTGGCTGAAACTGACGGGCAA
AAGGCCACCAGCATTGGAAATAACGATATCAAGCCGGAGAACCCGCGACA
GGAGCGGGATAAGCAAGAGCAGGAAGAGGAACAGCAGCAGCAGCATCGGC
GGCGGCGGCTTTGTAAAGCTTTTGTAGAGACGGACCGGGGATTGCGGGCG
AAGGAGGCTGGCTATTTGACGCGATTGATGCTGCTGACACCCCGAGAATG
TACTCCAAAAAATGACCTGCTTTGTGGTTATCCCGGTGAATGGGAAGAAA
TGATTTTGAAGAGGGAAACTGAAAAAGGAAGAGAGGTGGTGGAGGAAATG
GAGTACGTGGTGGTCAATGGCAACGACGCCGCAGTCTTCGATGCTTTTTT
TGGGGATTCAGGAGCAGGTGGAGAGGGAGAGGATGATGCGTCTGATGATG
ATGAAGTAGGTTGAAAGGAAATGACAATTAAAGTCACATATTGATACATC
TAGAA

protein sequence of jgi.p|Nanoce1779_2|124935

>mRNA_6693-protein ID=mRNA_6693-protein|Name=jgi.p|Nanoce1779_2|124935|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MLSSCTWTSELFKPATTTSTPSYLKGRARKNRVSRSGRRDKPQYEAALTR
LLAVTEPTYATTLPISRFPIPSLSSKCPSHASVTTQVEDTAEWLASVKGI
DPAEGHLCNPQRAQRKRQQVANLMQVCHAYIGQLLALQSTSATPAQLRVI
EFCCGSGHVALPLAALYPSVHFILLDNRPPSIRQAEERSAAANFHNVTCR
CEDLHDFPDSETFHLGIALHACGPLTDLVMDFCLKQRAAYVLCPCCIGKI
QASPLEFPRSSCFRALLPDRRQYESMASAGDLSVRQFFSKSKVAETDGQK
ATSIGNNDIKPENPRQERDKQEQEEEQQQQHRRRRLCKAFVETDRGLRAK
EAGYLTRLMLLTPRECTPKNDLLCGYPGEWEEMILKRETEKGREVVEEME
YVVVNGNDAAVFDAFFGDSGAGGEGEDDASDDDEVG*

mRNA from alignment at scaffold_18:451737..453841-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6693 ID=mRNA_6693|Name=jgi.p|Nanoce1779_2|124935|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp|location=Sequence derived from alignment at scaffold_18:451737..453841- (Nannochloropsis oceanica)
AATTATTTAATGGGTCATTTGTTTATTTACATTGAATTACGTCGCATCTA
ACATAGACCTGTCAATCGGTCGTCTTTCCTTGCCGAATGCATATCAATGA
AGTCCACGAATAAGTTATTTAACGACCAACAGTCCTTCATGAATTTGTGA
ATGTAAATGAATTGGACATGGAAACGATGTAGCAAGAGATGATAAAAAGA
CGACATCTGTCACAAAAGCTTGTGGCGAGGGGCTTCGTTTATGCAAACAA
AGGCGTGGCAAGTGTGTGATAATTTGAAGTGTGGTTTGCATTATGGGCCT
ACGGGTGGTAGGGAGGAACGATGGGCTACTTTGCGTGGCTCCAAAAAATC
TGCGGCCACACGTACAAGACCACAGACACACGAAGGACGATGTCGGAGCC
TTTTTCGCTCTAGAAAATACCCGTGGGGCTCGGTAGGGCTTGGTACAGGT
GCATATGGGTGTGCATCATATGCCTTTTGCTTTTTTACAGGGTTTGCTCT
GCTTCTCAAACCCCTCAAAAAGCATCGAACACATGGACAACTCCTCAAAA
AGCAAACCCCTATCCACTACGACGGCCTGGGCTTTACTCGTCGCGTTCAT
GATGATGTACAGAACAGCTTCTGCTGATACTGCTGTTGGGCCGGCAGCGA
GAGCTCCGACCCTGGCTTCGCCTAGTGTCTCCCCCAGCCCTCCCCAGGGG
CTGGACTTCTATTCTAATCCCATACCACACAATACTGCATACACCGGCAG
AAGATGCTGTCGTCCTGCACGTGGACAAGTGAATTGTTTAAACCAGCTAC
TACCACCTCTACGCCTTCGTACCTCAAGGGCCGCGCGCGCAAGAATCGCG
TGAGCCGGTCGGGCCGTCGGGACAAGCCACAATACGAGGCTGCATTGACG
CGTCTACTAGCCGTCACAGAACCCACGTACGCCACAACGTTGCCAATCTC
CCGCTTTCCTATACCCTCCTTATCGTCCAAATGCCCTTCCCATGCCTCCG
TCACGACCCAAGTCGAAGACACGGCCGAGTGGCTGGCATCGGTCAAGGGC
ATCGATCCCGCTGAAGGACACCTGTGCAATCCCCAGCGAGCGCAACGAAA
ACGGCAGCAAGTGGCAAATTTGATGCAGGTATGCCACGCATATATCGGGC
AGCTACTTGCCCTTCAAAGCACCTCTGCAACGCCAGCTCAGCTCAGAGTG
ATTGAATTCTGCTGCGGGAGTGGCCATGTGGCGTTACCTCTGGCAGCACT
CTATCCCTCCGTGCATTTCATTCTTCTCGACAACCGCCCCCCCTCCATCC
GTCAAGCAGAGGAGCGATCTGCTGCGGCCAACTTCCACAATGTAACATGC
CGGTGCGAAGATTTGCACGACTTTCCAGATTCTGAAACGTTTCACCTCGG
CATAGCTCTTCATGCATGCGGTCCTCTGACAGACTTGGTGATGGATTTTT
GCCTGAAGCAACGGGCGGCCTACGTTCTTTGCCCCTGCTGCATTGGCAAG
ATTCAAGCCAGTCCTCTAGAATTTCCTCGATCCTCTTGTTTCCGGGCGCT
TTTACCTGATCGGCGGCAATATGAGTCGATGGCATCTGCTGGGGATCTGA
GCGTGCGACAGTTCTTTTCCAAATCGAAAGTGGCTGAAACTGACGGGCAA
AAGGCCACCAGCATTGGAAATAACGATATCAAGCCGGAGAACCCGCGACA
GGAGCGGGATAAGCAAGAGCAGGAAGAGGAACAGCAGCAGCAGCATCGGC
GGCGGCGGCTTTGTAAAGCTTTTGTAGAGACGGACCGGGGATTGCGGGCG
AAGGAGGCTGGCTATTTGACGCGATTGATGCTGCTGACACCCCGAGAATG
TACTCCAAAAAATGACCTGCTTTGTGGTTATCCCGGTGAATGGGAAGAAA
TGATTTTGAAGAGGGAAACTGAAAAAGGAAGAGAGGTGGTGGAGGAAATG
GAGTACGTGGTGGTCAATGGCAACGACGCCGCAGTCTTCGATGCTTTTTT
TGGGGATTCAGGAGCAGGTGGAGAGGGAGAGGATGATGCGTCTGATGATG
ATGAAGTAGGTTGAAAGGAAATGACAATTAAAGTCACATATTGATACATC
TAGAA

Coding sequence (CDS) from alignment at scaffold_18:451737..453841-

>mRNA_6693 ID=mRNA_6693|Name=jgi.p|Nanoce1779_2|124935|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at scaffold_18:451737..453841- (Nannochloropsis oceanica)
ATGCTGTCGTCCTGCACGTGGACAAGTGAATTGTTTAAACCAGCTACTAC
CACCTCTACGCCTTCGTACCTCAAGGGCCGCGCGCGCAAGAATCGCGTGA
GCCGGTCGGGCCGTCGGGACAAGCCACAATACGAGGCTGCATTGACGCGT
CTACTAGCCGTCACAGAACCCACGTACGCCACAACGTTGCCAATCTCCCG
CTTTCCTATACCCTCCTTATCGTCCAAATGCCCTTCCCATGCCTCCGTCA
CGACCCAAGTCGAAGACACGGCCGAGTGGCTGGCATCGGTCAAGGGCATC
GATCCCGCTGAAGGACACCTGTGCAATCCCCAGCGAGCGCAACGAAAACG
GCAGCAAGTGGCAAATTTGATGCAGGTATGCCACGCATATATCGGGCAGC
TACTTGCCCTTCAAAGCACCTCTGCAACGCCAGCTCAGCTCAGAGTGATT
GAATTCTGCTGCGGGAGTGGCCATGTGGCGTTACCTCTGGCAGCACTCTA
TCCCTCCGTGCATTTCATTCTTCTCGACAACCGCCCCCCCTCCATCCGTC
AAGCAGAGGAGCGATCTGCTGCGGCCAACTTCCACAATGTAACATGCCGG
TGCGAAGATTTGCACGACTTTCCAGATTCTGAAACGTTTCACCTCGGCAT
AGCTCTTCATGCATGCGGTCCTCTGACAGACTTGGTGATGGATTTTTGCC
TGAAGCAACGGGCGGCCTACGTTCTTTGCCCCTGCTGCATTGGCAAGATT
CAAGCCAGTCCTCTAGAATTTCCTCGATCCTCTTGTTTCCGGGCGCTTTT
ACCTGATCGGCGGCAATATGAGTCGATGGCATCTGCTGGGGATCTGAGCG
TGCGACAGTTCTTTTCCAAATCGAAAGTGGCTGAAACTGACGGGCAAAAG
GCCACCAGCATTGGAAATAACGATATCAAGCCGGAGAACCCGCGACAGGA
GCGGGATAAGCAAGAGCAGGAAGAGGAACAGCAGCAGCAGCATCGGCGGC
GGCGGCTTTGTAAAGCTTTTGTAGAGACGGACCGGGGATTGCGGGCGAAG
GAGGCTGGCTATTTGACGCGATTGATGCTGCTGACACCCCGAGAATGTAC
TCCAAAAAATGACCTGCTTTGTGGTTATCCCGGTGAATGGGAAGAAATGA
TTTTGAAGAGGGAAACTGAAAAAGGAAGAGAGGTGGTGGAGGAAATGGAG
TACGTGGTGGTCAATGGCAACGACGCCGCAGTCTTCGATGCTTTTTTTGG
GGATTCAGGAGCAGGTGGAGAGGGAGAGGATGATGCGTCTGATGATGATG
AAGTAGGTTGA

Synonyms

Publications