jgi.p|Nanoce1779_2|597729, mRNA_6692 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597729
Unique Name	mRNA_6692
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1915
Alignment location	scaffold_18:449103..451245 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597815
Track	FilteredModels2
ProteinId	597729

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:449103..451245 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597729	gene_6692	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597729	mRNA_6692-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6692	CDS_6692	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:449103..451245-
coding sequence from alignment at scaffold_18:449103..451245-

mRNA sequence

>mRNA_6692 ID=mRNA_6692|Name=jgi.p|Nanoce1779_2|597729|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp
ACAGTCTCCAGCACAGCCACTACCCTGAGTGCCTATTGTACCGGAAGCGA
GGGAGCCAAACTCAGATTCAAGAAAACCCAAGACCAACTCGCCATCAGCA
GCATACCATTATTATCGTCATCGTACCCTCTCTTTGATGAGCAATGCTTT
CGCCGCTGCCCGGCTGGGTTACGAGCTTCTATCAAATGGCAAGGCCGGTC
CCAGGAAAACGGTGGTGTTTCTGCATGGCATCCTAGGCAGTCTCAAGAAC
TGGAGACAGCCCGCACAGCGCGTCATTGGTATGTTTCCGCACTACCAAGC
CTTGCTCGTCGACCACCGCGGCCACGGGCAGTCCGAGGCGGGTCTCCCTC
CACACACCCTCGCCGGGTGTGCCTTGGATGTACACGCCCTCTTGCAGAGA
CTCCAACTTCGGCCCGACATACTGTGCGGCCATTCCTTCGGAGGAAAAAT
TGCTCTAGAATACGTTAAGCAAGGGCTTGACGACAAAGGAGGAGGCATCC
AAGTCCCGAGGCAGACTTGGGTCTTTGATTCCTTGCCCACCGCGGTGGAC
CGGCACAAAGCCATCGGCGAGAACTCGGTGTGGGACGTTATTGAAAAGCT
GGGCCAGGTACCATTGCCGCAACCAAGCAAGGAAGGTCTCGTCTCGATGT
TGATCGAAGAGAAGCGTATCCCCTCCGCGATTGCCCACTGGCTTATGACG
AGTCTGAAGCGCGTGCCTGCTGGAGGAGGGCAAGGAGGGGAACAAGGAGG
ATTGGTGTGGACTTTCGATTTGGAAGTGATCCGCGCTCTATTTCACGCCT
ACACCAATACCTGCTACTATGACGTGATGGAATCTCCTGCTCTGTCTCTG
CAGCATCATCGCATTGATTTCATCCAGGCGGGGAAGAACCAGGCCTGGAC
ACCAGAAGTACTGGACCGCTTCGCGCAAATTCAAGCCCTAGGACGGACGA
ACATCGGAATCCATAAGTTGGAAAAAGCCGGTCATTGGGTGCACGTCGAC
GACCTGGAGGGTGTGCTTCGACTGCTGGCACCCACGTTCCTGCCACAGCC
CTAAGTCTTCCCCCCACCCTCTAAAATGAGATAAATACTAGATTAAAAAC
TGACGGAGAAATGGGAGAAGTACATAAAACCAGGACAAAAACATGGTAAA
TCTTACTTTCTGTTCTATCATTTCTTTGGTTGGCTGATTGGGTCGGTTTT
ACGCATTGATTTTTGGCCTTCGGGGAGACAATGAAGCGCAGAAAGCAAGC
CCCGAAAAGCTGTACACTCATAGGCGCACAATTTAGGTCGACATGCCTAC
GTTGAGTCTCCCTCCCTCCCCCTTTCCCTCCCTCTCATACACCACAGACA
TCAAATGCGTCCATCGGCTCATGCGCCTCGCAAAGAAATACCGTTGTCTC
AAAATTTCTTCTTCTATTTTTCCCCCTTTCGAGATACTTTTTCGTTTCCC
AATGAGCTTTTCGCGCTTTTCCTGTCGTGAGGAGCCCTACCTCTCATGCG
GAGTCCTTGTCTTCTTTTCGTACTGGCATGAAGGATTACTGACCCCTTGA
GTGACTTGCACTCAACATTCCATGTTTCTTTCTCTCCCTTCCGCTATGAA
GTATGGCCAAAGCGCCCATGCCTTCTCGAACTGTTTGTAAGGTGAGACGC
ACACACGATGATTCTCATTGCTACCTCTCTCCAAATATTTATAAAGCAAG
CCTTGCCCCCACGCCTTTTCTCACGTCTTGCTTGCCCACCCTTTGACCTT
TCCATTCTATCAACATCTGTATATGATTCGTTTACTCAATCTCATCCGAC
CATCTGCGCCTGGGCCATCGCAGATGCTGTGGTATTCGAGGTGAAAATCC
GTGGAATTAATAGCGCCCCCCCCTTCACTTCATCCCCTCCACTGCTAATG
CATTTTATCTCCTCC

protein sequence of jgi.p|Nanoce1779_2|597729

>mRNA_6692-protein ID=mRNA_6692-protein|Name=jgi.p|Nanoce1779_2|597729|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MSNAFAAARLGYELLSNGKAGPRKTVVFLHGILGSLKNWRQPAQRVIGMF
PHYQALLVDHRGHGQSEAGLPPHTLAGCALDVHALLQRLQLRPDILCGHS
FGGKIALEYVKQGLDDKGGGIQVPRQTWVFDSLPTAVDRHKAIGENSVWD
VIEKLGQVPLPQPSKEGLVSMLIEEKRIPSAIAHWLMTSLKRVPAGGGQG
GEQGGLVWTFDLEVIRALFHAYTNTCYYDVMESPALSLQHHRIDFIQAGK
NQAWTPEVLDRFAQIQALGRTNIGIHKLEKAGHWVHVDDLEGVLRLLAPT
FLPQP*

mRNA from alignment at scaffold_18:449103..451245-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6692 ID=mRNA_6692|Name=jgi.p|Nanoce1779_2|597729|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at scaffold_18:449103..451245- (Nannochloropsis oceanica)
ACAGTCTCCAGCACAGCCACTACCCTGAGTGCCTATTGTACCGGAAGCGA
GGGAGCCAAACTCAGATTCAAGAAAACCCAAGACCAACTCGCCATCAGCA
GCATACCATTATTATCGTCATCGTACCCTCTCTTTGATGAGCAATGCTTT
CGCCGCTGCCCGGCTGGGTTACGAGCTTCTATCAAATGGCAAGGCCGGTC
CCAGGAAAACGGTGGTGTTTCTGCGTAAGTGACAGAGGAGGCTTCGTTGA
CCAGGCCCCCCCCCCCCCCCCCACAAGCACCAACGCGACAGTCTCTCACC
GCTCTGCCTTTCTTCCCCGTCACATAACGATAGATGGCATCCTAGGCAGT
CTCAAGAACTGGAGACAGCCCGCACAGCGCGTCATTGGTATGTTTCCGCA
CTACCAAGCCTTGCTCGTCGACCACCGCGGCCACGGGCAGTCCGAGGCGG
GTCTCCCTCCACACACCCTCGCCGGGTGTGCCTTGGATGTACACGCCCTC
TTGCAGAGACTCCAACTTCGGCCCGACATACTGTGCGGCCATTCCTTCGG
AGGAAAAATTGCTCTAGAATACGTTAAGCAAGGGCTTGACGACAAAGGAG
GAGGCATCCAAGTCCCGAGGCAGACTTGGGTCTTTGATTCCTTGCCCACC
GCGGTGGACCGGCACAAAGCCATCGGCGAGAACTCGGTGTGGGACGTTAT
TGAAAAGCTGGGCCAGGTACCATTGCCGCAACCAAGCAAGGAAGGTCTCG
TCTCGATGTTGATCGAAGAGAAGCGTATCCCCTCCGCGATTGCCCACTGG
CTTATGACGAGTCTGAAGCGCGTGCCTGCTGGAGGAGGGCAAGGAGGGGA
ACAAGGAGGATTGGTGTGGACTTTCGATTTGGAAGTGATCCGCGCTCTAT
TTCACGCCTACACCAATACCTGCTACTATGACGTGATGGAATCTCCTGCT
CTGTCTCTGCAGCATCATCGCATTGATTTCATCCAGGCGGGGAAGAACCA
GGCCTGGACACCAGAAGTACTGGGTGGGCATTCCCTTTCCCCTTCTCCTC
GCCCCCCCCCCTCTTCATTTCGCAGGCATGGACAGCCATTTCTGATGCTC
GTTCTCCCCCCCCCCCCTCCTTCTCCCTCGTTCCTCCCACAGACCGCTTC
GCGCAAATTCAAGCCCTAGGACGGACGAACATCGGAATCCATAAGTTGGA
AAAAGCCGGTCATTGGGTGCACGTCGACGACCTGGAGGGTGTGCTTCGAC
TGCTGGCACCCACGTTCCTGCCACAGCCCTAAGTCTTCCCCCCACCCTCT
AAAATGAGATAAATACTAGATTAAAAACTGACGGAGAAATGGGAGAAGTA
CATAAAACCAGGACAAAAACATGGTAAATCTTACTTTCTGTTCTATCATT
TCTTTGGTTGGCTGATTGGGTCGGTTTTACGCATTGATTTTTGGCCTTCG
GGGAGACAATGAAGCGCAGAAAGCAAGCCCCGAAAAGCTGTACACTCATA
GGCGCACAATTTAGGTCGACATGCCTACGTTGAGTCTCCCTCCCTCCCCC
TTTCCCTCCCTCTCATACACCACAGACATCAAATGCGTCCATCGGCTCAT
GCGCCTCGCAAAGAAATACCGTTGTCTCAAAATTTCTTCTTCTATTTTTC
CCCCTTTCGAGATACTTTTTCGTTTCCCAATGAGCTTTTCGCGCTTTTCC
TGTCGTGAGGAGCCCTACCTCTCATGCGGAGTCCTTGTCTTCTTTTCGTA
CTGGCATGAAGGATTACTGACCCCTTGAGTGACTTGCACTCAACATTCCA
TGTTTCTTTCTCTCCCTTCCGCTATGAAGTATGGCCAAAGCGCCCATGCC
TTCTCGAACTGTTTGTAAGGTGAGACGCACACACGATGATTCTCATTGCT
ACCTCTCTCCAAATATTTATAAAGCAAGCCTTGCCCCCACGCCTTTTCTC
ACGTCTTGCTTGCCCACCCTTTGACCTTTCCATTCTATCAACATCTGTAT
ATGATTCGTTTACTCAATCTCATCCGACCATCTGCGCCTGGGCCATCGCA
GATGCTGTGGTATTCGAGGTGAAAATCCGTGGAATTAATAGCGCCCCCCC
CTTCACTTCATCCCCTCCACTGCTAATGCATTTTATCTCCTCC

Coding sequence (CDS) from alignment at scaffold_18:449103..451245-

>mRNA_6692 ID=mRNA_6692|Name=jgi.p|Nanoce1779_2|597729|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_18:449103..451245- (Nannochloropsis oceanica)
ACCGCTTCGCGCAAATTCAAGCCCTAGGACGGACGAACATCGGAATCCAT
AAGTTGGAAAAAGCCGGTCATTGGGTGCACGTCGACGACCTGGAGGGTGT
GCTTCGACTGCTGGCACCCACGTTCCTGCCACAGCCCTAAATGGCATCCT
AGGCAGTCTCAAGAACTGGAGACAGCCCGCACAGCGCGTCATTGGTATGT
TTCCGCACTACCAAGCCTTGCTCGTCGACCACCGCGGCCACGGGCAGTCC
GAGGCGGGTCTCCCTCCACACACCCTCGCCGGGTGTGCCTTGGATGTACA
CGCCCTCTTGCAGAGACTCCAACTTCGGCCCGACATACTGTGCGGCCATT
CCTTCGGAGGAAAAATTGCTCTAGAATACGTTAAGCAAGGGCTTGACGAC
AAAGGAGGAGGCATCCAAGTCCCGAGGCAGACTTGGGTCTTTGATTCCTT
GCCCACCGCGGTGGACCGGCACAAAGCCATCGGCGAGAACTCGGTGTGGG
ACGTTATTGAAAAGCTGGGCCAGGTACCATTGCCGCAACCAAGCAAGGAA
GGTCTCGTCTCGATGTTGATCGAAGAGAAGCGTATCCCCTCCGCGATTGC
CCACTGGCTTATGACGAGTCTGAAGCGCGTGCCTGCTGGAGGAGGGCAAG
GAGGGGAACAAGGAGGATTGGTGTGGACTTTCGATTTGGAAGTGATCCGC
GCTCTATTTCACGCCTACACCAATACCTGCTACTATGACGTGATGGAATC
TCCTGCTCTGTCTCTGCAGCATCATCGCATTGATTTCATCCAGGCGGGGA
AGAACCAGGCCTGGACACCAGAAGTACTGGATGAGCAATGCTTTCGCCGC
TGCCCGGCTGGGTTACGAGCTTCTATCAAATGGCAAGGCCGGTCCCAGGA
AAACGGTGGTGTTTCTGCACCGCTTCGCGCAAATTCAAGCCCTAGGACGG
ACGAACATCGGAATCCATAAGTTGGAAAAAGCCGGTCATTGGGTGCACGT
CGACGACCTGGAGGGTGTGCTTCGACTGCTGGCACCCACGTTCCTGCCAC
AGCCCTAAATGGCATCCTAGGCAGTCTCAAGAACTGGAGACAGCCCGCAC
AGCGCGTCATTGGTATGTTTCCGCACTACCAAGCCTTGCTCGTCGACCAC
CGCGGCCACGGGCAGTCCGAGGCGGGTCTCCCTCCACACACCCTCGCCGG
GTGTGCCTTGGATGTACACGCCCTCTTGCAGAGACTCCAACTTCGGCCCG
ACATACTGTGCGGCCATTCCTTCGGAGGAAAAATTGCTCTAGAATACGTT
AAGCAAGGGCTTGACGACAAAGGAGGAGGCATCCAAGTCCCGAGGCAGAC
TTGGGTCTTTGATTCCTTGCCCACCGCGGTGGACCGGCACAAAGCCATCG
GCGAGAACTCGGTGTGGGACGTTATTGAAAAGCTGGGCCAGGTACCATTG
CCGCAACCAAGCAAGGAAGGTCTCGTCTCGATGTTGATCGAAGAGAAGCG
TATCCCCTCCGCGATTGCCCACTGGCTTATGACGAGTCTGAAGCGCGTGC
CTGCTGGAGGAGGGCAAGGAGGGGAACAAGGAGGATTGGTGTGGACTTTC
GATTTGGAAGTGATCCGCGCTCTATTTCACGCCTACACCAATACCTGCTA
CTATGACGTGATGGAATCTCCTGCTCTGTCTCTGCAGCATCATCGCATTG
ATTTCATCCAGGCGGGGAAGAACCAGGCCTGGACACCAGAAGTACTGGAT
GAGCAATGCTTTCGCCGCTGCCCGGCTGGGTTACGAGCTTCTATCAAATG
GCAAGGCCGGTCCCAGGAAAACGGTGGTGTTTCTGCACCGCTTCGCGCAA
ATTCAAGCCCTAGGACGGACGAACATCGGAATCCATAAGTTGGAAAAAGC
CGGTCATTGGGTGCACGTCGACGACCTGGAGGGTGTGCTTCGACTGCTGG
CACCCACGTTCCTGCCACAGCCCTAAATGGCATCCTAGGCAGTCTCAAGA
ACTGGAGACAGCCCGCACAGCGCGTCATTGGTATGTTTCCGCACTACCAA
GCCTTGCTCGTCGACCACCGCGGCCACGGGCAGTCCGAGGCGGGTCTCCC
TCCACACACCCTCGCCGGGTGTGCCTTGGATGTACACGCCCTCTTGCAGA
GACTCCAACTTCGGCCCGACATACTGTGCGGCCATTCCTTCGGAGGAAAA
ATTGCTCTAGAATACGTTAAGCAAGGGCTTGACGACAAAGGAGGAGGCAT
CCAAGTCCCGAGGCAGACTTGGGTCTTTGATTCCTTGCCCACCGCGGTGG
ACCGGCACAAAGCCATCGGCGAGAACTCGGTGTGGGACGTTATTGAAAAG
CTGGGCCAGGTACCATTGCCGCAACCAAGCAAGGAAGGTCTCGTCTCGAT
GTTGATCGAAGAGAAGCGTATCCCCTCCGCGATTGCCCACTGGCTTATGA
CGAGTCTGAAGCGCGTGCCTGCTGGAGGAGGGCAAGGAGGGGAACAAGGA
GGATTGGTGTGGACTTTCGATTTGGAAGTGATCCGCGCTCTATTTCACGC
CTACACCAATACCTGCTACTATGACGTGATGGAATCTCCTGCTCTGTCTC
TGCAGCATCATCGCATTGATTTCATCCAGGCGGGGAAGAACCAGGCCTGG
ACACCAGAAGTACTGGATGAGCAATGCTTTCGCCGCTGCCCGGCTGGGTT
ACGAGCTTCTATCAAATGGCAAGGCCGGTCCCAGGAAAACGGTGGTGTTT
CTGC

Synonyms

Publications