jgi.p|Nanoce1779_2|512706, mRNA_6691 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|512706
Unique NamemRNA_6691
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length537
Alignment locationscaffold_18:447910..448446 +

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Properties
Property NameValue
TranscriptId512792
TrackFilteredModels2
ProteinId512706
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:447910..448446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|512706gene_6691Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|512706mRNA_6691-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6691CDS_6691Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6691 ID=mRNA_6691|Name=jgi.p|Nanoce1779_2|512706|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
ATGGGCCAGCTATGTGAACGCATGGTGGACCTGCTCTCCCGTCGCATCGA
AAAGCGGGTCGTCCTCCTAGGCCTGGACAATGCGGGCAAGACTACCTGCG
TCTACCGCCTGCTCCTCGGTAAAAAAATCGACACCGTCCCCACCATCGGG
TTCAACAGCGAAGAAGTCCCTCACAATCGCTGCAATTTTATCATGTGGGA
CATTGGAGGACAAGCCAAAATCCGCAAGTTGTGGAAACATTACATCGAGT
CAGCAGATGCCCTCATTTTTGTCGTGGACTCCCAAGACCGAGCCCGCCTT
AAAGAGGCTCGCGCGGCGTTCAAGCGCATGCTCCGTCATAAGACCTTGCG
GAATACCGTCCTATTAATCTATGCGAACAAAACGGACTATGAGAATTCCA
TGACTCCTGCGGAGATCGTGGAGGGCTTGGATGTAAAACGTGTGGTGGGG
GATCGGAAATGGTTCATTCAAAAGACATGTGCCATTTCCGGGCAAGGATT
GAGGGAAGGCTTGGACTGGCTCAGTCGTGCACTAGAG
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protein sequence of jgi.p|Nanoce1779_2|512706

>mRNA_6691-protein ID=mRNA_6691-protein|Name=jgi.p|Nanoce1779_2|512706|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MGQLCERMVDLLSRRIEKRVVLLGLDNAGKTTCVYRLLLGKKIDTVPTIG
FNSEEVPHNRCNFIMWDIGGQAKIRKLWKHYIESADALIFVVDSQDRARL
KEARAAFKRMLRHKTLRNTVLLIYANKTDYENSMTPAEIVEGLDVKRVVG
DRKWFIQKTCAISGQGLREGLDWLSRALE
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mRNA from alignment at scaffold_18:447910..448446+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6691 ID=mRNA_6691|Name=jgi.p|Nanoce1779_2|512706|organism=Nannochloropsis oceanica|type=mRNA|length=537bp|location=Sequence derived from alignment at scaffold_18:447910..448446+ (Nannochloropsis oceanica)
ATGGGCCAGCTATGTGAACGCATGGTGGACCTGCTCTCCCGTCGCATCGA
AAAGCGGGTCGTCCTCCTAGGCCTGGACAATGCGGGCAAGACTACCTGCG
TCTACCGCCTGCTCCTCGGTAAAAAAATCGACACCGTCCCCACCATCGGG
TTCAACAGCGAAGAAGTCCCTCACAATCGCTGCAATTTTATCATGTGGGA
CATTGGAGGACAAGCCAAAATCCGCAAGTTGTGGAAACATTACATCGAGT
CAGCAGATGCCCTCATTTTTGTCGTGGACTCCCAAGACCGAGCCCGCCTT
AAAGAGGCTCGCGCGGCGTTCAAGCGCATGCTCCGTCATAAGACCTTGCG
GAATACCGTCCTATTAATCTATGCGAACAAAACGGACTATGAGAATTCCA
TGACTCCTGCGGAGATCGTGGAGGGCTTGGATGTAAAACGTGTGGTGGGG
GATCGGAAATGGTTCATTCAAAAGACATGTGCCATTTCCGGGCAAGGATT
GAGGGAAGGCTTGGACTGGCTCAGTCGTGCACTAGAG
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Coding sequence (CDS) from alignment at scaffold_18:447910..448446+

>mRNA_6691 ID=mRNA_6691|Name=jgi.p|Nanoce1779_2|512706|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_18:447910..448446+ (Nannochloropsis oceanica)
ATGGGCCAGCTATGTGAACGCATGGTGGACCTGCTCTCCCGTCGCATCGA
AAAGCGGGTCGTCCTCCTAGGCCTGGACAATGCGGGCAAGACTACCTGCG
TCTACCGCCTGCTCCTCGGTAAAAAAATCGACACCGTCCCCACCATCGGG
TTCAACAGCGAAGAAGTCCCTCACAATCGCTGCAATTTTATCATGTGGGA
CATTGGAGGACAAGCCAAAATCCGCAAGTTGTGGAAACATTACATCGAGT
CAGCAGATGCCCTCATTTTTGTCGTGGACTCCCAAGACCGAGCCCGCCTT
AAAGAGGCTCGCGCGGCGTTCAAGCGCATGCTCCGTCATAAGACCTTGCG
GAATACCGTCCTATTAATCTATGCGAACAAAACGGACTATGAGAATTCCA
TGACTCCTGCGGAGATCGTGGAGGGCTTGGATGTAAAACGTGTGGTGGGG
GATCGGAAATGGTTCATTCAAAAGACATGTGCCATTTCCGGGCAAGGATT
GAGGGAAGGCTTGGACTGGCTCAGTCGTGCACTAGAG
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Synonyms
Publications