jgi.p|Nanoce1779_2|597724, mRNA_6690 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597724
Unique Name	mRNA_6690
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1765
Alignment location	scaffold_18:445269..447033 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597810
Track	FilteredModels2
ProteinId	597724

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:445269..447033 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597724	gene_6690	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6690	CDS_6690	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597724	mRNA_6690-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:445269..447033-
coding sequence from alignment at scaffold_18:445269..447033-

mRNA sequence

>mRNA_6690 ID=mRNA_6690|Name=jgi.p|Nanoce1779_2|597724|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp
ATGGTCATGACCCGGAGTAGGGCCTCCCCGAATGGCAGCCCGACCACGCC
TCAAGCCAGCGCGAGACGTCGTCGACGTCCTGAGGACAGCACGGGGAGCG
AGGGTGCCTCCGCCTCCTTAAAGACTTCCAACAAGAGCAGCAAGGGCAGG
GAGACGACAAGAAAAACCGCTACAAAACAGAACTTAAGCCAAAGCTTACC
ATCAGACCCGTGGGGATGGCAGCGTCTGGATTTCATGCGTGTCCTAATTG
CGCTCATGACCTTGGCGGTTGCGGCTTTGGTGGCGTACGGGGTTAATCAG
CAGGTTACGGAGCGCGTCGAGGACGAGGGGGGAAAGGCGCCGCTGGGGTC
CGGGAAAATGTTTGATACAATTGCCCGGCATTACGATCGCATGAACAAAT
TCATGAGTTTGGGGATGGACCAGAGCTGGCGCATCTTTTTGATCGAGGGG
TTGGGCTTGCGCGAGGGAGACCGAGTGCTGGACTTGGCGACTGGCACGGC
GGACGTGGCCATCTTGGCGGCCGAGGCCTTTGCAGCGCGAAACTGGACGG
AAGGGCGAGTGTTGGGCATTGACCCATCCGCGGGGATGCTCGAGATTGGC
GTGGAGAAAGTGGCGACAAAGGGCTTGGCTTCGATCGTGACTCTGACGCT
GGGCGACGCACAGGTGCTGGAGAAGGTCCCCTCTGATTCCATCGACAAAA
TTAGTATGTCGTTTGGCATTCGAAATGTTGTAGATCGCCCAGCAGCCTTG
CGGGAAATGGCGCGGGTCCTCAAGAAAGACATGGGATCCACGGTGGGGAT
TTTGGAATTTCAATTGCCCTCTTCTGGACCCTTGCGATGGGTGGCTGAAT
TTATGGTGCGGTATGGAGCTCCTTTCTTGGGGGCACTGCTGACGGGAATG
AGTGATGAATACATTCATTTGAGGAGGAGCATATTGGAATTTCCGACCCA
GAAGGATTTTGTAGCACTGATGGCGGAGGGGGGGTTAGATGTGTTCGATG
TACGGGAGACGGGCTTTGGGGCCGTGACGCTGTTTTTGGCCCGGCCTGCA
CAAACAGCAGTCGACGCCTCTGCTGCCTCTGCTGCCTCTACTGCCTCTGC
TACCTCTGCTACCTCTGCTACCTCTGCTGCTGTTGCTGCCAGTGCAGCAA
CGCAGGAGAAGGAGGTTGCTGCCTTTGAACAAGCAGAGAATGCAGCTGCT
CAAGCAGAAGAGGAGCGAGTTGCAATTGATGAGGCTGCCGCTGCAGCAGC
AGAGATCAAGGCAGAGGAGGAAAAAGCCATGCGAATTGCGACCGGGAGGG
CCCCAAAAATGGAGGAAGAGAAGACGCGTCAAGCGGCAGGAGCGGCAGCA
GCTGCGCAAAAAGCAAAGGAAGAGAAGGAAGAAGCCGTCCGTGTTGACAA
GGAAATAGAAGAAGAGGGAGTGCGAGAACGCGCAAGTGCGGAGGGTGATA
TCAGGCGTTTGCAGCAAGAGGAGGAGCAGGAAAGGGAGAAGAGAGCAGTA
GCTGAGAGAGAAGCAGCTCTAGAGGCGGCTCGTCAAGAGAGGAAAGCAGA
GCATGAACAGAAGCGCGAATCAGCAGAAGCAGCAGAGGCGGCGGCTATGA
TGCTAGCGCAGGCACAACAGGCTGAAGAAAAGTTGAAAGCAGAACAAAAA
GCATCAGCAGAAGCAGCAGCAGCAGAAGCGGCGGAAGCACCAGCAGCGGA
AGCAGCAGCAGCAGATGCAGCAGCAGCTGCAGCGGAAGCAGCAGAAGCAG
CAGAAGCAGAAGCAA

protein sequence of jgi.p|Nanoce1779_2|597724

>mRNA_6690-protein ID=mRNA_6690-protein|Name=jgi.p|Nanoce1779_2|597724|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MVMTRSRASPNGSPTTPQASARRRRRPEDSTGSEGASASLKTSNKSSKGR
ETTRKTATKQNLSQSLPSDPWGWQRLDFMRVLIALMTLAVAALVAYGVNQ
QVTERVEDEGGKAPLGSGKMFDTIARHYDRMNKFMSLGMDQSWRIFLIEG
LGLREGDRVLDLATGTADVAILAAEAFAARNWTEGRVLGIDPSAGMLEIG
VEKVATKGLASIVTLTLGDAQVLEKVPSDSIDKISMSFGIRNVVDRPAAL
REMARVLKKDMGSTVGILEFQLPSSGPLRWVAEFMVRYGAPFLGALLTGM
SDEYIHLRRSILEFPTQKDFVALMAEGGLDVFDVRETGFGAVTLFLARPA
QTAVDASAASAASTASATSATSATSAAVAASAATQEKEVAAFEQAENAAA
QAEEERVAIDEAAAAAAEIKAEEEKAMRIATGRAPKMEEEKTRQAAGAAA
AAQKAKEEKEEAVRVDKEIEEEGVRERASAEGDIRRLQQEEEQEREKRAV
AEREAALEAARQERKAEHEQKRESAEAAEAAAMMLAQAQQAEEKLKAEQK
ASAEAAAAEAAEAPAAEAAAADAAAAAAEAAEAAEAEA

mRNA from alignment at scaffold_18:445269..447033-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6690 ID=mRNA_6690|Name=jgi.p|Nanoce1779_2|597724|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp|location=Sequence derived from alignment at scaffold_18:445269..447033- (Nannochloropsis oceanica)
ATGGTCATGACCCGGAGTAGGGCCTCCCCGAATGGCAGCCCGACCACGCC
TCAAGCCAGCGCGAGACGTCGTCGACGTCCTGAGGACAGCACGGGGAGCG
AGGGTGCCTCCGCCTCCTTAAAGACTTCCAACAAGAGCAGCAAGGGCAGG
GAGACGACAAGAAAAACCGCTACAAAACAGAACTTAAGCCAAAGCTTACC
ATCAGACCCGTGGGGATGGCAGCGTCTGGATTTCATGCGTGTCCTAATTG
CGCTCATGACCTTGGCGGTTGCGGCTTTGGTGGCGTACGGGGTTAATCAG
CAGGTTACGGAGCGCGTCGAGGACGAGGGGGGAAAGGCGCCGCTGGGGTC
CGGGAAAATGTTTGATACAATTGCCCGGCATTACGATCGCATGAACAAAT
TCATGAGTTTGGGGATGGACCAGAGCTGGCGCATCTTTTTGATCGAGGGG
TTGGGCTTGCGCGAGGGAGACCGAGTGCTGGACTTGGCGACTGGCACGGC
GGACGTGGCCATCTTGGCGGCCGAGGCCTTTGCAGCGCGAAACTGGACGG
AAGGGCGAGTGTTGGGCATTGACCCATCCGCGGGGATGCTCGAGATTGGC
GTGGAGAAAGTGGCGACAAAGGGCTTGGCTTCGATCGTGACTCTGACGCT
GGGCGACGCACAGGTGCTGGAGAAGGTCCCCTCTGATTCCATCGACAAAA
TTAGTATGTCGTTTGGCATTCGAAATGTTGTAGATCGCCCAGCAGCCTTG
CGGGAAATGGCGCGGGTCCTCAAGAAAGACATGGGATCCACGGTGGGGAT
TTTGGAATTTCAATTGCCCTCTTCTGGACCCTTGCGATGGGTGGCTGAAT
TTATGGTGCGGTATGGAGCTCCTTTCTTGGGGGCACTGCTGACGGGAATG
AGTGATGAATACATTCATTTGAGGAGGAGCATATTGGAATTTCCGACCCA
GAAGGATTTTGTAGCACTGATGGCGGAGGGGGGGTTAGATGTGTTCGATG
TACGGGAGACGGGCTTTGGGGCCGTGACGCTGTTTTTGGCCCGGCCTGCA
CAAACAGCAGTCGACGCCTCTGCTGCCTCTGCTGCCTCTACTGCCTCTGC
TACCTCTGCTACCTCTGCTACCTCTGCTGCTGTTGCTGCCAGTGCAGCAA
CGCAGGAGAAGGAGGTTGCTGCCTTTGAACAAGCAGAGAATGCAGCTGCT
CAAGCAGAAGAGGAGCGAGTTGCAATTGATGAGGCTGCCGCTGCAGCAGC
AGAGATCAAGGCAGAGGAGGAAAAAGCCATGCGAATTGCGACCGGGAGGG
CCCCAAAAATGGAGGAAGAGAAGACGCGTCAAGCGGCAGGAGCGGCAGCA
GCTGCGCAAAAAGCAAAGGAAGAGAAGGAAGAAGCCGTCCGTGTTGACAA
GGAAATAGAAGAAGAGGGAGTGCGAGAACGCGCAAGTGCGGAGGGTGATA
TCAGGCGTTTGCAGCAAGAGGAGGAGCAGGAAAGGGAGAAGAGAGCAGTA
GCTGAGAGAGAAGCAGCTCTAGAGGCGGCTCGTCAAGAGAGGAAAGCAGA
GCATGAACAGAAGCGCGAATCAGCAGAAGCAGCAGAGGCGGCGGCTATGA
TGCTAGCGCAGGCACAACAGGCTGAAGAAAAGTTGAAAGCAGAACAAAAA
GCATCAGCAGAAGCAGCAGCAGCAGAAGCGGCGGAAGCACCAGCAGCGGA
AGCAGCAGCAGCAGATGCAGCAGCAGCTGCAGCGGAAGCAGCAGAAGCAG
CAGAAGCAGAAGCAA

Coding sequence (CDS) from alignment at scaffold_18:445269..447033-

>mRNA_6690 ID=mRNA_6690|Name=jgi.p|Nanoce1779_2|597724|organism=Nannochloropsis oceanica|type=CDS|length=1765bp|location=Sequence derived from alignment at scaffold_18:445269..447033- (Nannochloropsis oceanica)
ATGGTCATGACCCGGAGTAGGGCCTCCCCGAATGGCAGCCCGACCACGCC
TCAAGCCAGCGCGAGACGTCGTCGACGTCCTGAGGACAGCACGGGGAGCG
AGGGTGCCTCCGCCTCCTTAAAGACTTCCAACAAGAGCAGCAAGGGCAGG
GAGACGACAAGAAAAACCGCTACAAAACAGAACTTAAGCCAAAGCTTACC
ATCAGACCCGTGGGGATGGCAGCGTCTGGATTTCATGCGTGTCCTAATTG
CGCTCATGACCTTGGCGGTTGCGGCTTTGGTGGCGTACGGGGTTAATCAG
CAGGTTACGGAGCGCGTCGAGGACGAGGGGGGAAAGGCGCCGCTGGGGTC
CGGGAAAATGTTTGATACAATTGCCCGGCATTACGATCGCATGAACAAAT
TCATGAGTTTGGGGATGGACCAGAGCTGGCGCATCTTTTTGATCGAGGGG
TTGGGCTTGCGCGAGGGAGACCGAGTGCTGGACTTGGCGACTGGCACGGC
GGACGTGGCCATCTTGGCGGCCGAGGCCTTTGCAGCGCGAAACTGGACGG
AAGGGCGAGTGTTGGGCATTGACCCATCCGCGGGGATGCTCGAGATTGGC
GTGGAGAAAGTGGCGACAAAGGGCTTGGCTTCGATCGTGACTCTGACGCT
GGGCGACGCACAGGTGCTGGAGAAGGTCCCCTCTGATTCCATCGACAAAA
TTAGTATGTCGTTTGGCATTCGAAATGTTGTAGATCGCCCAGCAGCCTTG
CGGGAAATGGCGCGGGTCCTCAAGAAAGACATGGGATCCACGGTGGGGAT
TTTGGAATTTCAATTGCCCTCTTCTGGACCCTTGCGATGGGTGGCTGAAT
TTATGGTGCGGTATGGAGCTCCTTTCTTGGGGGCACTGCTGACGGGAATG
AGTGATGAATACATTCATTTGAGGAGGAGCATATTGGAATTTCCGACCCA
GAAGGATTTTGTAGCACTGATGGCGGAGGGGGGGTTAGATGTGTTCGATG
TACGGGAGACGGGCTTTGGGGCCGTGACGCTGTTTTTGGCCCGGCCTGCA
CAAACAGCAGTCGACGCCTCTGCTGCCTCTGCTGCCTCTACTGCCTCTGC
TACCTCTGCTACCTCTGCTACCTCTGCTGCTGTTGCTGCCAGTGCAGCAA
CGCAGGAGAAGGAGGTTGCTGCCTTTGAACAAGCAGAGAATGCAGCTGCT
CAAGCAGAAGAGGAGCGAGTTGCAATTGATGAGGCTGCCGCTGCAGCAGC
AGAGATCAAGGCAGAGGAGGAAAAAGCCATGCGAATTGCGACCGGGAGGG
CCCCAAAAATGGAGGAAGAGAAGACGCGTCAAGCGGCAGGAGCGGCAGCA
GCTGCGCAAAAAGCAAAGGAAGAGAAGGAAGAAGCCGTCCGTGTTGACAA
GGAAATAGAAGAAGAGGGAGTGCGAGAACGCGCAAGTGCGGAGGGTGATA
TCAGGCGTTTGCAGCAAGAGGAGGAGCAGGAAAGGGAGAAGAGAGCAGTA
GCTGAGAGAGAAGCAGCTCTAGAGGCGGCTCGTCAAGAGAGGAAAGCAGA
GCATGAACAGAAGCGCGAATCAGCAGAAGCAGCAGAGGCGGCGGCTATGA
TGCTAGCGCAGGCACAACAGGCTGAAGAAAAGTTGAAAGCAGAACAAAAA
GCATCAGCAGAAGCAGCAGCAGCAGAAGCGGCGGAAGCACCAGCAGCGGA
AGCAGCAGCAGCAGATGCAGCAGCAGCTGCAGCGGAAGCAGCAGAAGCAG
CAGAAGCAGAAGCAA

Synonyms

Publications