jgi.p|Nanoce1779_2|573730, mRNA_669 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573730
Unique NamemRNA_669
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length654
Alignment locationscaffold_2:150300..151295 -

Link to JBrowse

Properties
Property NameValue
TranscriptId573816
TrackFilteredModels2
ProteinId573730
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:150300..151295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573730gene_669Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573730mRNA_669-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_669CDS_669Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_669 ID=mRNA_669|Name=jgi.p|Nanoce1779_2|573730|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
AATCATTATGAGGACAGGACGAGATGATAAAATGGTGGAGCGTAAGAAAA
GTGCCAGTGGCGTCACGGTAGCCCGCCGCAATTTCTTGAGAAAGCTGCAA
TCATGCCTATCGGCGGGGCGCTCAAGCTCAAAGGGATGTCTATCAACAAG
GACAAGAAGAAGAAAAAGAAACGTTCCCGCGAGGAGAGTCCTGACGACGA
TGCAGTAGCCGCGACCAGCACGCATCACAAAGATGATGGCGAGGATGGGG
AGGAGGTTCCACTTGCCTTGGAGAAGGACGACGGATTAACTGAGACGCAA
CGCCGACACATTGCCCGACAGAAGGAGCGGGAGAAGAATAATATCAAGAA
TATGGTTAGCAAAAGCCATCGGGAGCGCATTGACGAGTTTAATCAGTACT
TGTCTGTGTTGACGGAACACAATGACATTCCTCGAGTGTCGGCGGCCGGG
AACGGGTAGAAGGTGGAAGACTCATGAACACAGGAATATGGAAGAGCTGA
AGAGAGGGAGTATTTTTATGTGTTTGTACGTGTCCATGTGGGTGTGTGTG
CTTGTGAATACAGGGGATGAAAAAGAAGGAAGAAGTTGCGTTGCGTTCTG
AGGAGACATTTATGATAAACGAACAAATAAAGAAGATATTAATTCAGTTT
TTCT
back to top

protein sequence of jgi.p|Nanoce1779_2|573730

>mRNA_669-protein ID=mRNA_669-protein|Name=jgi.p|Nanoce1779_2|573730|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MPIGGALKLKGMSINKDKKKKKKRSREESPDDDAVAATSTHHKDDGEDGE
EVPLALEKDDGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYL
SVLTEHNDIPRVSAAGNG*
back to top

mRNA from alignment at scaffold_2:150300..151295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_669 ID=mRNA_669|Name=jgi.p|Nanoce1779_2|573730|organism=Nannochloropsis oceanica|type=mRNA|length=996bp|location=Sequence derived from alignment at scaffold_2:150300..151295- (Nannochloropsis oceanica)
AATCATTATGAGGACAGGACGAGATGATAAAATGGTGGAGCGTAAGAAAA
GTGCCAGTGGCGTCACGGTAGCCCGCCGCAATTTCTTGAGAAAGTAAGAC
TTGCTGCACCAACCCAGCTCCCGCGATCCACAAGCTAACAATCCTTGCAT
GCACACCACAATCATAACACACAGGCTGCAATCATGCCTATCGGCGGGGC
GCTCAAGCTCAAAGGGATGTCTATCAACAAGGACAAGTAAGTACCTACAT
AATCCTTCCATGCCCTCCATCTCCTTCCATGATACATTCATGCCACATGT
ACGCAGTCTATGCGACAGAACCACGGCTGAGTAAGTGTTTCACTTGCCCC
TAAAGAGCGTACCAATCGTTGCTGTGGCCACGTCGGTTTATCTCCCTCCT
TTCTTTAGGGAACTCACATGCTGGATCAACCCACCCCACCATTTTCCTTC
CGCATACATCGCACCAACACCGCACCACACACCCGTCCACGTCACAGGAA
GAAGAAAAAGAAACGTTCCCGCGAGGAGAGTCCTGACGACGATGCAGTAG
CCGCGACCAGCACGCATCACAAAGATGATGGCGAGGATGGGGAGGAGGTT
CCACTTGCCTTGGAGAAGGACGACGGATTAACTGAGACGCAACGCCGACA
CATTGCCCGACAGAAGGAGCGGGAGAAGAATAATATCAAGAATATGGTTA
GCAAAAGCCATCGGGAGCGCATTGACGAGTTTAATCAGTACTTGTCTGTG
TTGACGGAACACAATGACATTCCTCGAGTGTCGGCGGCCGGGAACGGGTA
GAAGGTGGAAGACTCATGAACACAGGAATATGGAAGAGCTGAAGAGAGGG
AGTATTTTTATGTGTTTGTACGTGTCCATGTGGGTGTGTGTGCTTGTGAA
TACAGGGGATGAAAAAGAAGGAAGAAGTTGCGTTGCGTTCTGAGGAGACA
TTTATGATAAACGAACAAATAAAGAAGATATTAATTCAGTTTTTCT
back to top

Coding sequence (CDS) from alignment at scaffold_2:150300..151295-

>mRNA_669 ID=mRNA_669|Name=jgi.p|Nanoce1779_2|573730|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_2:150300..151295- (Nannochloropsis oceanica)
GAAGAAGAAAAAGAAACGTTCCCGCGAGGAGAGTCCTGACGACGATGCAG
TAGCCGCGACCAGCACGCATCACAAAGATGATGGCGAGGATGGGGAGGAG
GTTCCACTTGCCTTGGAGAAGGACGACGGATTAACTGAGACGCAACGCCG
ACACATTGCCCGACAGAAGGAGCGGGAGAAGAATAATATCAAGAATATGG
TTAGCAAAAGCCATCGGGAGCGCATTGACGAGTTTAATCAGTACTTGTCT
GTGTTGACGGAACACAATGACATTCCTCGAGTGTCGGCGGCCGGGAACGG
GTAGATGCCTATCGGCGGGGCGCTCAAGCTCAAAGGGATGTCTATCAACA
AGGACAAGAAGAAGAAAAAGAAACGTTCCCGCGAGGAGAGTCCTGACGAC
GATGCAGTAGCCGCGACCAGCACGCATCACAAAGATGATGGCGAGGATGG
GGAGGAGGTTCCACTTGCCTTGGAGAAGGACGACGGATTAACTGAGACGC
AACGCCGACACATTGCCCGACAGAAGGAGCGGGAGAAGAATAATATCAAG
AATATGGTTAGCAAAAGCCATCGGGAGCGCATTGACGAGTTTAATCAGTA
CTTGTCTGTGTTGACGGAACACAATGACATTCCTCGAGTGTCGGCGGCCG
GGAACGGGTAGATGCCTATCGGCGGGGCGCTCAAGCTCAAAGGGATGTCT
ATCAACAAGGACAA
back to top
Synonyms
Publications