jgi.p|Nanoce1779_2|597723, mRNA_6689 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597723
Unique NamemRNA_6689
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length599
Alignment locationscaffold_18:443805..444403 -

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Properties
Property NameValue
TranscriptId597809
TrackFilteredModels2
ProteinId597723
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:443805..444403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597723gene_6689Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597723mRNA_6689-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6689CDS_6689Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6689 ID=mRNA_6689|Name=jgi.p|Nanoce1779_2|597723|organism=Nannochloropsis oceanica|type=mRNA|length=599bp
AGCAGAAGCAGCAGCAGAAGCAGCAGCAGCAGAAGCAGAAGCAGCAGCAG
CAGAAGCAGAAGCAGAAGAAGCAGTAGCAGCAGAAGCAGCAGAAGTAGCA
GAAGCGGAAGCAGCTGCAGCAGAAGCAGCAGCAAGAGAGGCAGCAGCACG
TGAGGCCATGGGGATCGAAGCTACACGCCAGCTGCAGGAGATAGAATTAG
AAGAGAAAGCTTCTGCTGAAGCAAAAACACAGGCTGAGGATGAAGCAACA
GGAGCAGAAGCAGCAACCGCAGCAGCTCAAATTAAAGCGGACACCATGCA
ATTGCGGCGACAATTGCAGGAAGAGGAGTTGGCCGCAGCAGAGAAGAAGA
CACGTGCAGCAGCGCGTGTGCAAAGACTTGAGCAGGAAAGGGAGCGTCGG
CAACCACATGAGGAGGCTGCTATTCCTGCTAGTGCTGCTGTGGTTGCAGC
TTCTAGTGCGGCTGCGGCTGGTGCTGCCGCTGGTGCTGCGGCTATGGCTG
CGGCCGCTGCGGCTGCTGCTGCTGCCGCTGCCACTGACGCACGTGGTGCT
GCTGCTGGTGCTGCTGGTGGTATGGATGAGCTCGTAGTCGTTCCTGACG
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protein sequence of jgi.p|Nanoce1779_2|597723

>mRNA_6689-protein ID=mRNA_6689-protein|Name=jgi.p|Nanoce1779_2|597723|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MKQQEQKQQPQQLKLKRTPCNCGDNCRKRSWPQQRRRHVQQRVCKDLSRK
GSVGNHMRRLLFLLVLLWLQLLVRLRLVLPLVLRLWLRPLRLLLLPLPLT
HVVLLLVLLVVWMSS*
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mRNA from alignment at scaffold_18:443805..444403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6689 ID=mRNA_6689|Name=jgi.p|Nanoce1779_2|597723|organism=Nannochloropsis oceanica|type=mRNA|length=599bp|location=Sequence derived from alignment at scaffold_18:443805..444403- (Nannochloropsis oceanica)
AGCAGAAGCAGCAGCAGAAGCAGCAGCAGCAGAAGCAGAAGCAGCAGCAG
CAGAAGCAGAAGCAGAAGAAGCAGTAGCAGCAGAAGCAGCAGAAGTAGCA
GAAGCGGAAGCAGCTGCAGCAGAAGCAGCAGCAAGAGAGGCAGCAGCACG
TGAGGCCATGGGGATCGAAGCTACACGCCAGCTGCAGGAGATAGAATTAG
AAGAGAAAGCTTCTGCTGAAGCAAAAACACAGGCTGAGGATGAAGCAACA
GGAGCAGAAGCAGCAACCGCAGCAGCTCAAATTAAAGCGGACACCATGCA
ATTGCGGCGACAATTGCAGGAAGAGGAGTTGGCCGCAGCAGAGAAGAAGA
CACGTGCAGCAGCGCGTGTGCAAAGACTTGAGCAGGAAAGGGAGCGTCGG
CAACCACATGAGGAGGCTGCTATTCCTGCTAGTGCTGCTGTGGTTGCAGC
TTCTAGTGCGGCTGCGGCTGGTGCTGCCGCTGGTGCTGCGGCTATGGCTG
CGGCCGCTGCGGCTGCTGCTGCTGCCGCTGCCACTGACGCACGTGGTGCT
GCTGCTGGTGCTGCTGGTGGTATGGATGAGCTCGTAGTCGTTCCTGACG
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Coding sequence (CDS) from alignment at scaffold_18:443805..444403-

>mRNA_6689 ID=mRNA_6689|Name=jgi.p|Nanoce1779_2|597723|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_18:443805..444403- (Nannochloropsis oceanica)
ATGAAGCAACAGGAGCAGAAGCAGCAACCGCAGCAGCTCAAATTAAAGCG
GACACCATGCAATTGCGGCGACAATTGCAGGAAGAGGAGTTGGCCGCAGC
AGAGAAGAAGACACGTGCAGCAGCGCGTGTGCAAAGACTTGAGCAGGAAA
GGGAGCGTCGGCAACCACATGAGGAGGCTGCTATTCCTGCTAGTGCTGCT
GTGGTTGCAGCTTCTAGTGCGGCTGCGGCTGGTGCTGCCGCTGGTGCTGC
GGCTATGGCTGCGGCCGCTGCGGCTGCTGCTGCTGCCGCTGCCACTGACG
CACGTGGTGCTGCTGCTGGTGCTGCTGGTGGTATGGATGAGCTCGTAG
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Synonyms
Publications