jgi.p|Nanoce1779_2|597718, mRNA_6688 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597718
Unique NamemRNA_6688
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_18:442007..443076 +

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Properties
Property NameValue
TranscriptId597804
TrackFilteredModels2
ProteinId597718
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:442007..443076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597718gene_6688Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597718mRNA_6688-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6688CDS_6688Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6688 ID=mRNA_6688|Name=jgi.p|Nanoce1779_2|597718|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
ACAGATCTCATCCAAGTACACTGATGAAGCGGGGCCGAATAGAAGAGCCA
GTGGTCAGTGTTGGTGGAACAAAAGCTACGCCCGCGGCGCCCGACCTCGC
CGATGACCCCCTCGCAGGGCGTGCCAGCCCCACGCTCTTTGTTGGTTCCC
TTGCCAAAAGCGTGCAGGAGAAAGATGTCCTTACGCTCTTTCTCCCCTTC
GGGAAAATCGTGGACATAGCGTTCTTTTGGCACATGCATGGCCCGCGGAA
AGGTGAGCCCAAAGGTTATTGTTTTCTCACGTTTGCGCACACAGAGGATG
CCACTGCAGCAATTAAGGCATTGAACGACGTTCGCTTGCACGGTCGAGCG
ATAGCAGTACGGTATCAGAGAGATGCGGATGAAGGAGGGAATGGCGCAAG
GTCGATGGTGTTTAAAGCACGAGCCAAAAGCATTCAGCAAGGCGGAAGAA
GAGATGGACGAGGAGTTGGTGGGGAGGGTAAGGACAACAGAACAGAAGGA
TCAAGAGCAGCGGCAGCAGGCGTGGCCTCGGTCGCGTTACCAAAACGGTC
AAAATTAGCGTCAACAGCAGCAGCTGAGAGGGGAGGAAACGGGGGAAGGG
AGGGAGAGGAGGAAGAATCGGCATTGGAAGCCAAGATTCGCATGCTAAGA
TTCCAGATTGCGGCAAGCAGTGGGGGTGGAGGTGGAGGACGGGGGTGAGA
GATTAATCTGTAAGTCGCATTTCGCAAAGACTTGTGAGTATTACAGACAA
CTGTGCGCTTGTTCTAAAAATCAGGGGGAGGAGAAACTTTAAAAAAACAA
AAGTAAGGGTGGC
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protein sequence of jgi.p|Nanoce1779_2|597718

>mRNA_6688-protein ID=mRNA_6688-protein|Name=jgi.p|Nanoce1779_2|597718|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MKRGRIEEPVVSVGGTKATPAAPDLADDPLAGRASPTLFVGSLAKSVQEK
DVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKAL
NDVRLHGRAIAVRYQRDADEGGNGARSMVFKARAKSIQQGGRRDGRGVGG
EGKDNRTEGSRAAAAGVASVALPKRSKLASTAAAERGGNGGREGEEEESA
LEAKIRMLRFQIAASSGGGGGGRG*
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mRNA from alignment at scaffold_18:442007..443076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6688 ID=mRNA_6688|Name=jgi.p|Nanoce1779_2|597718|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp|location=Sequence derived from alignment at scaffold_18:442007..443076+ (Nannochloropsis oceanica)
ACAGATCTCATCCAAGTACACTGATGAAGCGGGGCCGAATAGAAGAGCCA
GTGGTCAGTGTTGGTGGAACAAAAGGTAAGCGGGGACATGAATTGAAGGG
TGGGGCTGTACTGTCATGTGTTCTTTGACGGCATGGTAGAAAGGGGATGG
CAACAAAACGTGAGCCGTTGGCTGGTTGGCTGGAGGCACACATCATTGCA
GTATTGTCTGTTTGGGAGCTGCGGCACGTGGATGAGTTGGCCACGTGAAA
TGTAGTGTGTGTTCGTTGTCCTTCCGCCTCTCTCCCCGACCAAGCCACAG
CACACACCACACCGTCCTCCCACACCAAACAGCTACGCCCGCGGCGCCCG
ACCTCGCCGATGACCCCCTCGCAGGGCGTGCCAGCCCCACGCTCTTTGTT
GGTTCCCTTGCCAAAAGCGTGCAGGAGAAAGATGTCCTTACGCTCTTTCT
CCCCTTCGGGAAAATCGTGGACATAGCGTTCTTTTGGCACATGCATGGCC
CGCGGAAAGGTGAGCCCAAAGGTTATTGTTTTCTCACGTTTGCGCACACA
GAGGATGCCACTGCAGCAATTAAGGCATTGAACGACGTTCGCTTGCACGG
TCGAGCGATAGCAGTACGGTATCAGAGAGATGCGGATGAAGGAGGGAATG
GCGCAAGGTCGATGGTGTTTAAAGCACGAGCCAAAAGCATTCAGCAAGGC
GGAAGAAGAGATGGACGAGGAGTTGGTGGGGAGGGTAAGGACAACAGAAC
AGAAGGATCAAGAGCAGCGGCAGCAGGCGTGGCCTCGGTCGCGTTACCAA
AACGGTCAAAATTAGCGTCAACAGCAGCAGCTGAGAGGGGAGGAAACGGG
GGAAGGGAGGGAGAGGAGGAAGAATCGGCATTGGAAGCCAAGATTCGCAT
GCTAAGATTCCAGATTGCGGCAAGCAGTGGGGGTGGAGGTGGAGGACGGG
GGTGAGAGATTAATCTGTAAGTCGCATTTCGCAAAGACTTGTGAGTATTA
CAGACAACTGTGCGCTTGTTCTAAAAATCAGGGGGAGGAGAAACTTTAAA
AAAACAAAAGTAAGGGTGGC
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Coding sequence (CDS) from alignment at scaffold_18:442007..443076+

>mRNA_6688 ID=mRNA_6688|Name=jgi.p|Nanoce1779_2|597718|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_18:442007..443076+ (Nannochloropsis oceanica)
ATGAAGCGGGGCCGAATAGAAGAGCCAGTGGTCAGTGTTGGTGGAACAAA
AGCTACGCCCGCGGCGCCCGACCTCGCCGATGACCCCCTCGCAGGGCGTG
CCAGCCCCACGCTCTTTGTTGGTTCCCTTGCCAAAAGCGTGCAGGAGAAA
GATGTCCTTACGCTCTTTCTCCCCTTCGGGAAAATCGTGGACATAGCGTT
CTTTTGGCACATGCATGGCCCGCGGAAAGGTGAGCCCAAAGGTTATTGTT
TTCTCACGTTTGCGCACACAGAGGATGCCACTGCAGCAATTAAGGCATTG
AACGACGTTCGCTTGCACGGTCGAGCGATAGCAGTACGGTATCAGAGAGA
TGCGGATGAAGGAGGGAATGGCGCAAGGTCGATGGTGTTTAAAGCACGAG
CCAAAAGCATTCAGCAAGGCGGAAGAAGAGATGGACGAGGAGTTGGTGGG
GAGGGTAAGGACAACAGAACAGAAGGATCAAGAGCAGCGGCAGCAGGCGT
GGCCTCGGTCGCGTTACCAAAACGGTCAAAATTAGCGTCAACAGCAGCAG
CTGAGAGGGGAGGAAACGGGGGAAGGGAGGGAGAGGAGGAAGAATCGGCA
TTGGAAGCCAAGATTCGCATGCTAAGATTCCAGATTGCGGCAAGCAGTGG
GGGTGGAGGTGGAGGACGGGGGTGAATGAAGCGGGGCCGAATAGAAGAGC
CAGTGGTCAGTGTTGGTGGAACAAAAGCTACGCCCGCGGCGCCCGACCTC
GCCGATGACCCCCTCGCAGGGCGTGCCAGCCCCACGCTCTTTGTTGGTTC
CCTTGCCAAAAGCGTGCAGGAGAAAGATGTCCTTACGCTCTTTCTCCCCT
TCGGGAAAATCGTGGACATAGCGTTCTTTTGGCACATGCATGGCCCGCGG
AAAGGTGAGCCCAAAGGTTATTGTTTTCTCACGTTTGCGCACACAGAGGA
TGCCACTGCAGCAATTAAGGCATTGAACGACGTTCGCTTGCACGGTCGAG
CGATAGCAGTACGGTATCAGAGAGATGCGGATGAAGGAGGGAATGGCGCA
AGGTCGATGGTGTTTAAAGCACGAGCCAAAAGCATTCAGCAAGGCGGAAG
AAGAGATGGACGAGGAGTTGGTGGGGAGGGTAAGGACAACAGAACAGAAG
GATCAAGAGCAGCGGCAGCAGGCGTGGCCTCGGTCGCGTTACCAAAACGG
TCAAAATTAGCGTCAACAGCAGCAGCTGAGAGGGGAGGAAACGGGGGAAG
GGAGGGAGAGGAGGAAGAATCGGCATTGGAAGCCAAGATTCGCATGCTAA
GATTCCAGATTGCGGCAAGCAGTGGGGGTGGAGGTGGAGGACGGGGGTGA
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Synonyms
Publications