jgi.p|Nanoce1779_2|632091, mRNA_6687 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632091
Unique NamemRNA_6687
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1867
Alignment locationscaffold_18:440097..441963 -

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Properties
Property NameValue
TranscriptId632177
TrackFilteredModels2
ProteinId632091
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:440097..441963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632091gene_6687Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632091mRNA_6687-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6687CDS_6687Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6687 ID=mRNA_6687|Name=jgi.p|Nanoce1779_2|632091|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp
AGCGGTGGTATGATGATTGCGGCGAGACGGGGAAAGTGTTGGGGCGTGGA
GCTTCTCCATACATCACATTTGTGCTAACAGACAGATTTACCGGCTACAC
ACAGACAACTACAGCCACAGCCACAGTAATGGCGGATCCTTTTGATGGTC
TCTTTGGTGACCTGCCGGCAGCGGCCAAGAAGGAGGAGCTTAATATCACG
AACGAGACACAACGGCAGCAGAAGCGACCCGCTCCCCCCCACACCGACAA
AGATCAGAAGAAGCCGCAAGAAAAGGACGGTAGCCCTACCAGCACCAAGA
AACGTGCACGACAAGAGAACCAGGATGACAATGGCAAAACGACAGCCGCT
GCCATCAAGCCGGCCACGTTAGACCTCGAAGAAGCCCTTGATAAAATCAC
ACGCGCTTTGACCTCGACCAAGCTGGAAAAGAGTCGGAAGGCACTGGGCT
TGCTGACCAAGTTAATGACAGGAAATATCAATGCAGAAAACGCTGCACAA
TTTCATGCGACCATCGCATTTTTTATGGCGGTCGATGGCACGTGGGACCG
GTTACTAGGGCCCGCAGCCGAGGACAGGGCGCAGGCTGTCCAGCTCTTGT
CGTTGGTTAAGGAGCACATCCTCCTTTTTGGTCCGGAAGAACAATATCGC
GCAGCAACATGGATTTTGCTAGGATTACTGCGGTCGGAGATGTTGACGGA
TGATACCTTTGAGTTCCGCCGCGCGGCGCGGAATATCAAGGAGTACATTG
TTGCGTTGCAAGCGATAGACGACGAACAAGAGACTTACGCAGATAAGGAA
CGAAGGAGAGCCATTCTCGCTTGTCTCGCCACAGCCCTTCGGCATAACTT
CCACTCGTGGGCTAAGCCTTCGATTGAAGATTTATTCAAAGCCGCAACGG
AGAAACGTATGGTTTTCCCCGAGGATGAGAGGGAGGAGTTGGATGAGATG
AGTACAAGATTGAGGCAAACCGCGAGGGGGTTGAGTGTCAACCCGACGGG
TACGGTGATCTCGAGGAGTGTGCGGATGGTGAATAGCATGGCCACCCCGT
TCAACACGAAGAAGGGGGATATATATAGATGATGTTTATGAAGAGGAAGA
GGAAAAGTGGTTAAAAGGGGGGAGGGGAAGGAGTAAAAACACAAGTCTGT
TTGATTAAGAGACCGAGCGAGCGAGAGGCTTTGAGAATATTAACATGTCT
AGCGCTGCTTCTACTTGTCGTCCCTCTTCATGTGTTTACAGCCTTCTTCG
TAATCTCACGCTGTTGTTCTTGTTGTGACTATGTCATGCGCGCGCTTATT
CACCCTCACCATCTGACTCTAACCACCCCAAACGTACCACCTCTTATTTC
CCTGTCTCCACCCACTGGGATACCTACACAACCCACCCTAACGTCTCGTC
CCCCCATCCATCCGTCCCTCACCTTCGTCCCTTCTTAGACCATTTTCTCC
GGTTGCAACCACTCATCAAATTCCTCCGCCGTCAGGTAGCCTAGCGCCAA
AGCCGCTTCTCTCAGTGTCGATTTCTCATGGTGGGCTTTCATGGCAATTT
TCGCGGCCTTATCATACCCGATGTGGGGGTTGAGAGCCGTCACCGTCATA
AGGGACTCGTGGACATACTTGTTGAGCTTGTCTTCATTCACGCTTAGGCC
TTCCAACGCGTACTCTCGGAAGTTCCTGAGACAAAAAATGGGAGGGAGAG
GGAAGGAGGAAGAGGGGGAGGGTAATGGGATAAATGCATATACGACGACA
TCCAGTGCGCCCCTCACATGTCTTTCCAATCCCTCCCTCCCTCCCTGCCT
CCCTCCCTCCCTGCCTCCCTGCCTTCCTCCTCTCCCCCTCCCTACCTGGC
CGAGTCATGCATCAGCC
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protein sequence of jgi.p|Nanoce1779_2|632091

>mRNA_6687-protein ID=mRNA_6687-protein|Name=jgi.p|Nanoce1779_2|632091|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MADPFDGLFGDLPAAAKKEELNITNETQRQQKRPAPPHTDKDQKKPQEKD
GSPTSTKKRARQENQDDNGKTTAAAIKPATLDLEEALDKITRALTSTKLE
KSRKALGLLTKLMTGNINAENAAQFHATIAFFMAVDGTWDRLLGPAAEDR
AQAVQLLSLVKEHILLFGPEEQYRAATWILLGLLRSEMLTDDTFEFRRAA
RNIKEYIVALQAIDDEQETYADKERRRAILACLATALRHNFHSWAKPSIE
DLFKAATEKRMVFPEDEREELDEMSTRLRQTARGLSVNPTGTVISRSVRM
VNSMATPFNTKKGDIYR*
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mRNA from alignment at scaffold_18:440097..441963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6687 ID=mRNA_6687|Name=jgi.p|Nanoce1779_2|632091|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at scaffold_18:440097..441963- (Nannochloropsis oceanica)
AGCGGTGGTATGATGATTGCGGCGAGACGGGGAAAGTGTTGGGGCGTGGA
GCTTCTCCATACATCACATTTGTGCTAACAGACAGATTTACCGGCTACAC
ACAGACAACTACAGCCACAGCCACAGTAATGGCGGATCCTTTTGATGGTC
TCTTTGGTGACCTGCCGGCAGCGGCCAAGAAGGAGGAGCTTAATATCACG
AACGAGACACAACGGCAGCAGAAGCGACCCGCTCCCCCCCACACCGACAA
AGATCAGAAGAAGCCGCAAGAAAAGGACGGTAGCCCTACCAGCACCAAGA
AACGTGCACGACAAGAGAACCAGGATGACAATGGCAAAACGACAGCCGCT
GCCATCAAGCCGGCCACGTTAGACCTCGAAGAAGCCCTTGATAAAATCAC
ACGCGCTTTGACCTCGACCAAGCTGGAAAAGAGTCGGAAGGCACTGGGCT
TGCTGACCAAGTTAATGACAGGAAATATCAATGCAGAAAACGCTGCACAA
TTTCATGCGACCATCGCATTTTTTATGGCGGTCGATGGCACGTGGGACCG
GTTACTAGGGCCCGCAGCCGAGGACAGGGCGCAGGCTGTCCAGCTCTTGT
CGTTGGTTAAGGAGCACATCCTCCTTTTTGGTCCGGAAGAACAATATCGC
GCAGCAACATGGATTTTGCTAGGATTACTGCGGTCGGAGATGTTGACGGA
TGATACCTTTGAGTTCCGCCGCGCGGCGCGGAATATCAAGGAGTACATTG
TTGCGTTGCAAGCGATAGACGACGAACAAGAGACTTACGCAGATAAGGAA
CGAAGGAGAGCCATTCTCGCTTGTCTCGCCACAGCCCTTCGGCATAACTT
CCACTCGTGGGCTAAGCCTTCGATTGAAGATTTATTCAAAGCCGCAACGG
AGAAACGTATGGTTTTCCCCGAGGATGAGAGGGAGGAGTTGGATGAGATG
AGTACAAGATTGAGGCAAACCGCGAGGGGGTTGAGTGTCAACCCGACGGG
TACGGTGATCTCGAGGAGTGTGCGGATGGTGAATAGCATGGCCACCCCGT
TCAACACGAAGAAGGGGGATATATATAGATGATGTTTATGAAGAGGAAGA
GGAAAAGTGGTTAAAAGGGGGGAGGGGAAGGAGTAAAAACACAAGTCTGT
TTGATTAAGAGACCGAGCGAGCGAGAGGCTTTGAGAATATTAACATGTCT
AGCGCTGCTTCTACTTGTCGTCCCTCTTCATGTGTTTACAGCCTTCTTCG
TAATCTCACGCTGTTGTTCTTGTTGTGACTATGTCATGCGCGCGCTTATT
CACCCTCACCATCTGACTCTAACCACCCCAAACGTACCACCTCTTATTTC
CCTGTCTCCACCCACTGGGATACCTACACAACCCACCCTAACGTCTCGTC
CCCCCATCCATCCGTCCCTCACCTTCGTCCCTTCTTAGACCATTTTCTCC
GGTTGCAACCACTCATCAAATTCCTCCGCCGTCAGGTAGCCTAGCGCCAA
AGCCGCTTCTCTCAGTGTCGATTTCTCATGGTGGGCTTTCATGGCAATTT
TCGCGGCCTTATCATACCCGATGTGGGGGTTGAGAGCCGTCACCGTCATA
AGGGACTCGTGGACATACTTGTTGAGCTTGTCTTCATTCACGCTTAGGCC
TTCCAACGCGTACTCTCGGAAGTTCCTGAGACAAAAAATGGGAGGGAGAG
GGAAGGAGGAAGAGGGGGAGGGTAATGGGATAAATGCATATACGACGACA
TCCAGTGCGCCCCTCACATGTCTTTCCAATCCCTCCCTCCCTCCCTGCCT
CCCTCCCTCCCTGCCTCCCTGCCTTCCTCCTCTCCCCCTCCCTACCTGGC
CGAGTCATGCATCAGCC
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Coding sequence (CDS) from alignment at scaffold_18:440097..441963-

>mRNA_6687 ID=mRNA_6687|Name=jgi.p|Nanoce1779_2|632091|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_18:440097..441963- (Nannochloropsis oceanica)
ATGGCGGATCCTTTTGATGGTCTCTTTGGTGACCTGCCGGCAGCGGCCAA
GAAGGAGGAGCTTAATATCACGAACGAGACACAACGGCAGCAGAAGCGAC
CCGCTCCCCCCCACACCGACAAAGATCAGAAGAAGCCGCAAGAAAAGGAC
GGTAGCCCTACCAGCACCAAGAAACGTGCACGACAAGAGAACCAGGATGA
CAATGGCAAAACGACAGCCGCTGCCATCAAGCCGGCCACGTTAGACCTCG
AAGAAGCCCTTGATAAAATCACACGCGCTTTGACCTCGACCAAGCTGGAA
AAGAGTCGGAAGGCACTGGGCTTGCTGACCAAGTTAATGACAGGAAATAT
CAATGCAGAAAACGCTGCACAATTTCATGCGACCATCGCATTTTTTATGG
CGGTCGATGGCACGTGGGACCGGTTACTAGGGCCCGCAGCCGAGGACAGG
GCGCAGGCTGTCCAGCTCTTGTCGTTGGTTAAGGAGCACATCCTCCTTTT
TGGTCCGGAAGAACAATATCGCGCAGCAACATGGATTTTGCTAGGATTAC
TGCGGTCGGAGATGTTGACGGATGATACCTTTGAGTTCCGCCGCGCGGCG
CGGAATATCAAGGAGTACATTGTTGCGTTGCAAGCGATAGACGACGAACA
AGAGACTTACGCAGATAAGGAACGAAGGAGAGCCATTCTCGCTTGTCTCG
CCACAGCCCTTCGGCATAACTTCCACTCGTGGGCTAAGCCTTCGATTGAA
GATTTATTCAAAGCCGCAACGGAGAAACGTATGGTTTTCCCCGAGGATGA
GAGGGAGGAGTTGGATGAGATGAGTACAAGATTGAGGCAAACCGCGAGGG
GGTTGAGTGTCAACCCGACGGGTACGGTGATCTCGAGGAGTGTGCGGATG
GTGAATAGCATGGCCACCCCGTTCAACACGAAGAAGGGGGATATATATAG
ATGA
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Synonyms
Publications