jgi.p|Nanoce1779_2|531206, mRNA_6685 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|531206
Unique Name	mRNA_6685
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1509
Alignment location	scaffold_18:435549..437474 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	531292
Track	FilteredModels2
ProteinId	531206

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:435549..437474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531206	gene_6685	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|531206	mRNA_6685-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6685	CDS_6685	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:435549..437474+
coding sequence from alignment at scaffold_18:435549..437474+

mRNA sequence

>mRNA_6685 ID=mRNA_6685|Name=jgi.p|Nanoce1779_2|531206|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
ATGGTAAGTGCCCGACCACTCTTCACCTCCTTTCACTCATCCTCCCTCAC
TCACTCTTCCTCCCTCCCTCCCTCCCTCCTCCTTTCTCTGAACCAAGATA
CTCCCTCCTCCCTGTACGCCCAAATTCAAGAGCATTTCCTTTTTTACAAC
AAAGACGCCACCGCCCAAGCCTCCACCTTCGAGCTCTACTTCAACCTCCT
CTATTCCGTTTACAGCATCCCGAACATTCTCCTCCCCTTCCTCGGTGGGC
ATCTAGTCGATACCGTAGGCATGCGGGCGTGCATTGTCGTGTTTTCGCTC
TTGGTCTTAACGGGGCAGGTAATCACGGCTTTAGGGGTTACGATTCAGTC
GATGACAATCATGTTGGTAGGCCGACTCATCTTTGGCCTAGGAGGAGAGT
GCCTGGTGGTAGGACAAAGCGCGTTTATTTCCGCGTGGTTTCATTCAAGA
GAGGTTGCATTTGCACTGGGCTTCACTTTGTCGGTTTCCAGGTTGGGGAG
TGTATTGAACGACTGGGGAAGTCCGTATATCGCGCAGAAGATAGGGGTTG
TGGCGGCGTTCTGGTTCGGCGCCTTATTGTGTCTGGGCTCGACGTGCACT
GCCTTCTTACTGGCGTGTGTGCATCATGAGGCGTTACAGGCCAAATTGGA
TAGGTTAGCGCAGTTGGACGCAGTGGTGGACAGTATTAATGAGGATCATC
TATGGCACTTGATGGGCTTCGACACCATGTTTTGGTTGTTGGCGTGCGTG
TGTACCCTGTCCTATGGCGCCATCATGCCATTTAACAACATGGCTCAGGA
CTACTGCGCGGAGGTGAATAAGGTACGGAGGACGGCCGGATCGCTCCAGA
GTGTCCCTTTCATGGTGGCGGGGATTTTGACTCCGCTGGTGGGCATTTTG
ATTGATCGGTGCGGTCATCGGACGTTGTATATTTTACTGGGGCCTCTTTT
GTTGTTGGCGACGCACTTTGTATTCTTGGTGGGGGGTACATCGCCGTTGG
TGCCCTTGGTAGGGCTGGGGTTGGCGTATTCGATCGTTGCGGCTGTAGTG
TGGCCCAGTGTGCCGTTGACAGTGCATGCGAGTGAGAGTTCGAAGAGGTG
CGGGACGGCTTTTGGAATTCTGACAGTATTTCAGAACCTGTCCATGGCTT
TGTTTCCCATGGCGATTGCGGCGTTGTTGCAGTTGACGAATGGGTATGTG
ACAACGGAGTACTTTTTTATTGTCGTGTCCGTGGCGGGTATTGTGGCGGC
GGTGTGTTTAATGGTAGAGGACGAGAAGCACGGGGCGGTGCTCAGAAAGT
ATGTTGTGGATGGAGAGGAGACGAACCCCTACCATCCCGTCCATCCTTTC
CATCATGGTCATGGCCCGCATTTTCGCGCGTGGGGCACCGGGCGGACCCA
TGAAGAAGGAGAGGAAGGGAGAGACGGGGAGGGGGAGCGACGGCCGTTGA
CAGGGTTTGGCGTTCGTGATGCGGGAAGCCGTAAGGAGTACAGCGCCATC
AGCGTTTAA

protein sequence of jgi.p|Nanoce1779_2|531206

>mRNA_6685-protein ID=mRNA_6685-protein|Name=jgi.p|Nanoce1779_2|531206|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MVSARPLFTSFHSSSLTHSSSLPPSLLLSLNQDTPSSLYAQIQEHFLFYN
KDATAQASTFELYFNLLYSVYSIPNILLPFLGGHLVDTVGMRACIVVFSL
LVLTGQVITALGVTIQSMTIMLVGRLIFGLGGECLVVGQSAFISAWFHSR
EVAFALGFTLSVSRLGSVLNDWGSPYIAQKIGVVAAFWFGALLCLGSTCT
AFLLACVHHEALQAKLDRLAQLDAVVDSINEDHLWHLMGFDTMFWLLACV
CTLSYGAIMPFNNMAQDYCAEVNKVRRTAGSLQSVPFMVAGILTPLVGIL
IDRCGHRTLYILLGPLLLLATHFVFLVGGTSPLVPLVGLGLAYSIVAAVV
WPSVPLTVHASESSKRCGTAFGILTVFQNLSMALFPMAIAALLQLTNGYV
TTEYFFIVVSVAGIVAAVCLMVEDEKHGAVLRKYVVDGEETNPYHPVHPF
HHGHGPHFRAWGTGRTHEEGEEGRDGEGERRPLTGFGVRDAGSRKEYSAI
SV*

mRNA from alignment at scaffold_18:435549..437474+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6685 ID=mRNA_6685|Name=jgi.p|Nanoce1779_2|531206|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp|location=Sequence derived from alignment at scaffold_18:435549..437474+ (Nannochloropsis oceanica)
ATGGTAAGTGCCCGACCACTCTTCACCTCCTTTCACTCATCCTCCCTCAC
TCACTCTTCCTCCCTCCCTCCCTCCCTCCTCCTTTCTCTGAACCAAGATA
CTCCCTCCTCCCTGTACGCCCAAATTCAAGAGCATTTCCTTTTTTACAAC
AAAGACGCCACCGCCCAAGCCTCCACCTTCGAGCTCTACTTCAACCTCCT
CTATTCCGTTTACAGCATCCCGAACATTCTCCTCCCCTTCCTCGGTGGGC
ATCTAGTCGATACCGTAGGCATGCGGGCGTGCATTGTCGTGTTTTCGCTC
TTGGTCTTAACGGGGCAGGTAATCACGGCTTTAGGGGTTACGATTCAGTC
GATGACAATCATGTTGGTAGGCCGACTCATCTTTGGCCTAGGAGGAGAGT
GCCTGGTGGTAGGACAAAGCGCGTTTATTTCCGCGTGGTTTCATTCAAGA
GAGGTTGCATTTGCACTGGGCTTCACTTTGTCGGTTTCCAGGTTGGGGAG
TGTATTGAACGACTGGGGAAGTCCGTATATCGCGCAGAAGATAGGGGTTG
TGGCGGCGTTCTGGTTCGGCGCCTTATTGTGTCTGGGCTCGACGTGCACT
GCCTTCTTACTGGCGTGTGTTGATAAGAGCCATCGGTCGCGTGGCGTGCT
CGACGACCTGGAGGACACCCAGATCTCACTCGCCACTGCCCGTACTGATA
CTCCTGCTGGTGCCGGCACAGGGAGATCGTCCTATTCCTCCTCCTCCCCC
TTGCCTTCCGCGGAAGAACAAATGCATTTGGCCGCCCCCTGGGCAGCGAA
AGGTTCATACTTCGAGACCCCCCACCCCTCTTTTTATGGCCCGCCTCCTG
CCCTTCGTCCTGCTGGTGCTAGTGGAGGAGGAGCAGGAGGAGGAGGGGGG
GGAGAAGGGCCGGCGACGATGAACACATTGGTGCATGGGAGCCAGGTGCA
TCATGAGGCGTTACAGGCCAAATTGGATAGGTTAGCGCAGTTGGACGCAG
TGGTGGACAGTATTAATGAGGATCATCTATGGCACTTGATGGGCTTCGAC
ACCATGTTTTGGTTGTTGGCGTGCGTGTGTACCCTGTCCTATGGCGCCAT
CATGCCATTTAACAACATGGCTCAGGTGTACTTGCTGAAGAACTACCTGC
CCATCCACGAGGAGATCCCCAAGGGGGTCGACTGTTCGTTTAGGCCGGTG
TTGCCTGAGTGGGAGGACTACTGCGCGGAGGTGAATAAGGTACGGAGGAC
GGCCGGATCGCTCCAGAGTGTCCCTTTCATGGTGGCGGGGATTTTGACTC
CGCTGGTGGGCATTTTGATTGATCGGTGCGGTCATCGGACGTTGTATATT
TTACTGGGGCCTCTTTTGTTGTTGGCGACGCACTTTGTATTCTTGGTGGG
GGGTACATCGCCGTTGGTGCCCTTGGTAGGGCTGGGGTTGGCGTATTCGA
TCGTTGCGGCTGTAGTGTGGCCCAGTGTGCCGTTGACAGTGCATGCGAGT
GAGAGTTCGAAGAGGTGCGGGACGGCTTTTGGAATTCTGACAGTATTTCA
GAACCTGTCCATGGCTTTGTTTCCCATGGCGATTGCGGCGTTGTTGCAGT
TGACGAATGGGTATGTGACAACGGAGTACTTTTTTATTGTCGTGTCCGTG
GCGGGTATTGTGGCGGCGGTGTGTTTAATGGTAGAGGACGAGAAGCACGG
GGCGGTGCTCAGAAAGTATGTTGTGGATGGAGAGGAGACGAACCCCTACC
ATCCCGTCCATCCTTTCCATCATGGTCATGGCCCGCATTTTCGCGCGTGG
GGCACCGGGCGGACCCATGAAGAAGGAGAGGAAGGGAGAGACGGGGAGGG
GGAGCGACGGCCGTTGACAGGGTTTGGCGTTCGTGATGCGGGAAGCCGTA
AGGAGTACAGCGCCATCAGCGTTTAA

Coding sequence (CDS) from alignment at scaffold_18:435549..437474+

>mRNA_6685 ID=mRNA_6685|Name=jgi.p|Nanoce1779_2|531206|organism=Nannochloropsis oceanica|type=CDS|length=4527bp|location=Sequence derived from alignment at scaffold_18:435549..437474+ (Nannochloropsis oceanica)
ATGGTAAGTGCCCGACCACTCTTCACCTCCTTTCACTCATCCTCCCTCAC
TCACTCTTCCTCCCTCCCTCCCTCCCTCCTCCTTTCTCTGAACCAAGATA
CTCCCTCCTCCCTGTACGCCCAAATTCAAGAGCATTTCCTTTTTTACAAC
AAAGACGCCACCGCCCAAGCCTCCACCTTCGAGCTCTACTTCAACCTCCT
CTATTCCGTTTACAGCATCCCGAACATTCTCCTCCCCTTCCTCGGTGGGC
ATCTAGTCGATACCGTAGGCATGCGGGCGTGCATTGTCGTGTTTTCGCTC
TTGGTCTTAACGGGGCAGGTAATCACGGCTTTAGGGGTTACGATTCAGTC
GATGACAATCATGTTGGTAGGCCGACTCATCTTTGGCCTAGGAGGAGAGT
GCCTGGTGGTAGGACAAAGCGCGTTTATTTCCGCGTGGTTTCATTCAAGA
GAGGTTGCATTTGCACTGGGCTTCACTTTGTCGGTTTCCAGGTTGGGGAG
TGTATTGAACGACTGGGGAAGTCCGTATATCGCGCAGAAGATAGGGGTTG
TGGCGGCGTTCTGGTTCGGCGCCTTATTGTGTCTGGGCTCGACGTGCACT
GCCTTCTTACTGGCGTGTGTGCATCATGAGGCGTTACAGGCCAAATTGGA
TAGGTTAGCGCAGTTGGACGCAGTGGTGGACAGTATTAATGAGGATCATC
TATGGCACTTGATGGGCTTCGACACCATGTTTTGGTTGTTGGCGTGCGTG
TGTACCCTGTCCTATGGCGCCATCATGCCATTTAACAACATGGCTCAGGA
CTACTGCGCGGAGGTGAATAAGGTACGGAGGACGGCCGGATCGCTCCAGA
GTGTCCCTTTCATGGTGGCGGGGATTTTGACTCCGCTGGTGGGCATTTTG
ATTGATCGGTGCGGTCATCGGACGTTGTATATTTTACTGGGGCCTCTTTT
GTTGTTGGCGACGCACTTTGTATTCTTGGTGGGGGGTACATCGCCGTTGG
TGCCCTTGGTAGGGCTGGGGTTGGCGTATTCGATCGTTGCGGCTGTAGTG
TGGCCCAGTGTGCCGTTGACAGTGCATGCGAGTGAGAGTTCGAAGAGGTG
CGGGACGGCTTTTGGAATTCTGACAGTATTTCAGAACCTGTCCATGGCTT
TGTTTCCCATGGCGATTGCGGCGTTGTTGCAGTTGACGAATGGGTATGTG
ACAACGGAGTACTTTTTTATTGTCGTGTCCGTGGCGGGTATTGTGGCGGC
GGTGTGTTTAATGGTAGAGGACGAGAAGCACGGGGCGGTGCTCAGAAAGT
ATGTTGTGGATGGAGAGGAGACGAACCCCTACCATCCCGTCCATCCTTTC
CATCATGGTCATGGCCCGCATTTTCGCGCGTGGGGCACCGGGCGGACCCA
TGAAGAAGGAGAGGAAGGGAGAGACGGGGAGGGGGAGCGACGGCCGTTGA
CAGGGTTTGGCGTTCGTGATGCGGGAAGCCGTAAGGAGTACAGCGCCATC
AGCGTTTAAATGGTAAGTGCCCGACCACTCTTCACCTCCTTTCACTCATC
CTCCCTCACTCACTCTTCCTCCCTCCCTCCCTCCCTCCTCCTTTCTCTGA
ACCAAGATACTCCCTCCTCCCTGTACGCCCAAATTCAAGAGCATTTCCTT
TTTTACAACAAAGACGCCACCGCCCAAGCCTCCACCTTCGAGCTCTACTT
CAACCTCCTCTATTCCGTTTACAGCATCCCGAACATTCTCCTCCCCTTCC
TCGGTGGGCATCTAGTCGATACCGTAGGCATGCGGGCGTGCATTGTCGTG
TTTTCGCTCTTGGTCTTAACGGGGCAGGTAATCACGGCTTTAGGGGTTAC
GATTCAGTCGATGACAATCATGTTGGTAGGCCGACTCATCTTTGGCCTAG
GAGGAGAGTGCCTGGTGGTAGGACAAAGCGCGTTTATTTCCGCGTGGTTT
CATTCAAGAGAGGTTGCATTTGCACTGGGCTTCACTTTGTCGGTTTCCAG
GTTGGGGAGTGTATTGAACGACTGGGGAAGTCCGTATATCGCGCAGAAGA
TAGGGGTTGTGGCGGCGTTCTGGTTCGGCGCCTTATTGTGTCTGGGCTCG
ACGTGCACTGCCTTCTTACTGGCGTGTGTGCATCATGAGGCGTTACAGGC
CAAATTGGATAGGTTAGCGCAGTTGGACGCAGTGGTGGACAGTATTAATG
AGGATCATCTATGGCACTTGATGGGCTTCGACACCATGTTTTGGTTGTTG
GCGTGCGTGTGTACCCTGTCCTATGGCGCCATCATGCCATTTAACAACAT
GGCTCAGGACTACTGCGCGGAGGTGAATAAGGTACGGAGGACGGCCGGAT
CGCTCCAGAGTGTCCCTTTCATGGTGGCGGGGATTTTGACTCCGCTGGTG
GGCATTTTGATTGATCGGTGCGGTCATCGGACGTTGTATATTTTACTGGG
GCCTCTTTTGTTGTTGGCGACGCACTTTGTATTCTTGGTGGGGGGTACAT
CGCCGTTGGTGCCCTTGGTAGGGCTGGGGTTGGCGTATTCGATCGTTGCG
GCTGTAGTGTGGCCCAGTGTGCCGTTGACAGTGCATGCGAGTGAGAGTTC
GAAGAGGTGCGGGACGGCTTTTGGAATTCTGACAGTATTTCAGAACCTGT
CCATGGCTTTGTTTCCCATGGCGATTGCGGCGTTGTTGCAGTTGACGAAT
GGGTATGTGACAACGGAGTACTTTTTTATTGTCGTGTCCGTGGCGGGTAT
TGTGGCGGCGGTGTGTTTAATGGTAGAGGACGAGAAGCACGGGGCGGTGC
TCAGAAAGTATGTTGTGGATGGAGAGGAGACGAACCCCTACCATCCCGTC
CATCCTTTCCATCATGGTCATGGCCCGCATTTTCGCGCGTGGGGCACCGG
GCGGACCCATGAAGAAGGAGAGGAAGGGAGAGACGGGGAGGGGGAGCGAC
GGCCGTTGACAGGGTTTGGCGTTCGTGATGCGGGAAGCCGTAAGGAGTAC
AGCGCCATCAGCGTTTAAATGGTAAGTGCCCGACCACTCTTCACCTCCTT
TCACTCATCCTCCCTCACTCACTCTTCCTCCCTCCCTCCCTCCCTCCTCC
TTTCTCTGAACCAAGATACTCCCTCCTCCCTGTACGCCCAAATTCAAGAG
CATTTCCTTTTTTACAACAAAGACGCCACCGCCCAAGCCTCCACCTTCGA
GCTCTACTTCAACCTCCTCTATTCCGTTTACAGCATCCCGAACATTCTCC
TCCCCTTCCTCGGTGGGCATCTAGTCGATACCGTAGGCATGCGGGCGTGC
ATTGTCGTGTTTTCGCTCTTGGTCTTAACGGGGCAGGTAATCACGGCTTT
AGGGGTTACGATTCAGTCGATGACAATCATGTTGGTAGGCCGACTCATCT
TTGGCCTAGGAGGAGAGTGCCTGGTGGTAGGACAAAGCGCGTTTATTTCC
GCGTGGTTTCATTCAAGAGAGGTTGCATTTGCACTGGGCTTCACTTTGTC
GGTTTCCAGGTTGGGGAGTGTATTGAACGACTGGGGAAGTCCGTATATCG
CGCAGAAGATAGGGGTTGTGGCGGCGTTCTGGTTCGGCGCCTTATTGTGT
CTGGGCTCGACGTGCACTGCCTTCTTACTGGCGTGTGTGCATCATGAGGC
GTTACAGGCCAAATTGGATAGGTTAGCGCAGTTGGACGCAGTGGTGGACA
GTATTAATGAGGATCATCTATGGCACTTGATGGGCTTCGACACCATGTTT
TGGTTGTTGGCGTGCGTGTGTACCCTGTCCTATGGCGCCATCATGCCATT
TAACAACATGGCTCAGGACTACTGCGCGGAGGTGAATAAGGTACGGAGGA
CGGCCGGATCGCTCCAGAGTGTCCCTTTCATGGTGGCGGGGATTTTGACT
CCGCTGGTGGGCATTTTGATTGATCGGTGCGGTCATCGGACGTTGTATAT
TTTACTGGGGCCTCTTTTGTTGTTGGCGACGCACTTTGTATTCTTGGTGG
GGGGTACATCGCCGTTGGTGCCCTTGGTAGGGCTGGGGTTGGCGTATTCG
ATCGTTGCGGCTGTAGTGTGGCCCAGTGTGCCGTTGACAGTGCATGCGAG
TGAGAGTTCGAAGAGGTGCGGGACGGCTTTTGGAATTCTGACAGTATTTC
AGAACCTGTCCATGGCTTTGTTTCCCATGGCGATTGCGGCGTTGTTGCAG
TTGACGAATGGGTATGTGACAACGGAGTACTTTTTTATTGTCGTGTCCGT
GGCGGGTATTGTGGCGGCGGTGTGTTTAATGGTAGAGGACGAGAAGCACG
GGGCGGTGCTCAGAAAGTATGTTGTGGATGGAGAGGAGACGAACCCCTAC
CATCCCGTCCATCCTTTCCATCATGGTCATGGCCCGCATTTTCGCGCGTG
GGGCACCGGGCGGACCCATGAAGAAGGAGAGGAAGGGAGAGACGGGGAGG
GGGAGCGACGGCCGTTGACAGGGTTTGGCGTTCGTGATGCGGGAAGCCGT
AAGGAGTACAGCGCCATCAGCGTTTAA

Synonyms

Publications