jgi.p|Nanoce1779_2|597707, mRNA_6683 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597707
Unique NamemRNA_6683
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1058
Alignment locationscaffold_18:430757..431814 +

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Properties
Property NameValue
TranscriptId597793
TrackFilteredModels2
ProteinId597707
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:430757..431814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597707gene_6683Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597707mRNA_6683-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6683CDS_6683Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6683 ID=mRNA_6683|Name=jgi.p|Nanoce1779_2|597707|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp
ACGACAGGCCATGCGCGCCCTGGCTGGGTCTCGCTCAGCTGCCTGGCCAC
TCCTACTACTGCTTGGAAATGGTGGTAATGCTTGGACATTGACTTCATCG
TTTCTTCTTCAACAAAGCAGCTGCGGAACACCACCCTCCCCCATGTCCCC
TGCCTGCCGCCTTGTCGAAAGACAAACCCACCTAATAAAGGCCGCGGCCA
GACCCTTCGTCGACAACGATGTGGCGTGGCTTTCCCGGCAAGAACCGGTC
TCGTCCACTCAACAGCATCACGATCCCCACCACACCACCATTGATACCAT
CCCCAGCACCTCAATGAGTCCTAAAGAAGCCCACGCCTTGGTGTGCCTTG
ACGCCTGTCCGCTCGTTGCCGTCTTGCGTGGTGTAGCTGCGGTGGACCTG
CCAAAGGTGGTAATGACCTTGCGGCAAGAAGGGCTGACCATGATCAGCAT
ACCTGCCGAGTCCCCTGCCGGCTTGGAAGGCCTCCGGGCTCTTACCTCTT
CTTCCTCCTCCCTCTCCTCCACCTCCTTCCCCGAGCAGAAGCCTCTCCCC
TTTGCCCTTGGCGCCGCCACAGTCATCTCTCCCGACCAAGTCGACCTCGC
CGCCGCCGCTGGTGCTTCATTTATCAGCTGTCCCCACACCGACCCAGTCA
TTCTGGCGCGTGCCAAGGCCCATGGCCTCCTTGTCCTGCCCGGGATCCTC
ACCCCCAGCGAAGCATTCCTTGCGCTTAACCACGGTGCGCACGTCCTCAA
ACTTTTCCCTTCTCAAGCAGCGCCGCCTGGAATGGTGGCGTCGATCGCGG
CTGTACTACCTCCTCCTGCCCGTTTGTTGGTATCGGGAGGGGTGCAGGCG
GTAGATATGCCTGCTTACATTGCAGGGGGTGCCACGGGCTTTGCCTTGGG
CTCAACGTTGTTCAAACCTGGATTGAAGGAGGGGGAACTAGCGGAGAGGG
CTCGAGTGTTTGTCACGGCATTGAGAGTAGGGCAGACGGAGAAGGAGAAG
GAGAGGAAGAAGAAAGAGAAACTATAGAATATAGGTCCCAGAGGGAGGGA
GGGAGGGG
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protein sequence of jgi.p|Nanoce1779_2|597707

>mRNA_6683-protein ID=mRNA_6683-protein|Name=jgi.p|Nanoce1779_2|597707|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MRALAGSRSAAWPLLLLLGNGGNAWTLTSSFLLQQSSCGTPPSPMSPACR
LVERQTHLIKAAARPFVDNDVAWLSRQEPVSSTQQHHDPHHTTIDTIPST
SMSPKEAHALVCLDACPLVAVLRGVAAVDLPKVVMTLRQEGLTMISIPAE
SPAGLEGLRALTSSSSSLSSTSFPEQKPLPFALGAATVISPDQVDLAAAA
GASFISCPHTDPVILARAKAHGLLVLPGILTPSEAFLALNHGAHVLKLFP
SQAAPPGMVASIAAVLPPPARLLVSGGVQAVDMPAYIAGGATGFALGSTL
FKPGLKEGELAERARVFVTALRVGQTEKEKERKKKEKL*
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mRNA from alignment at scaffold_18:430757..431814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6683 ID=mRNA_6683|Name=jgi.p|Nanoce1779_2|597707|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp|location=Sequence derived from alignment at scaffold_18:430757..431814+ (Nannochloropsis oceanica)
ACGACAGGCCATGCGCGCCCTGGCTGGGTCTCGCTCAGCTGCCTGGCCAC
TCCTACTACTGCTTGGAAATGGTGGTAATGCTTGGACATTGACTTCATCG
TTTCTTCTTCAACAAAGCAGCTGCGGAACACCACCCTCCCCCATGTCCCC
TGCCTGCCGCCTTGTCGAAAGACAAACCCACCTAATAAAGGCCGCGGCCA
GACCCTTCGTCGACAACGATGTGGCGTGGCTTTCCCGGCAAGAACCGGTC
TCGTCCACTCAACAGCATCACGATCCCCACCACACCACCATTGATACCAT
CCCCAGCACCTCAATGAGTCCTAAAGAAGCCCACGCCTTGGTGTGCCTTG
ACGCCTGTCCGCTCGTTGCCGTCTTGCGTGGTGTAGCTGCGGTGGACCTG
CCAAAGGTGGTAATGACCTTGCGGCAAGAAGGGCTGACCATGATCAGCAT
ACCTGCCGAGTCCCCTGCCGGCTTGGAAGGCCTCCGGGCTCTTACCTCTT
CTTCCTCCTCCCTCTCCTCCACCTCCTTCCCCGAGCAGAAGCCTCTCCCC
TTTGCCCTTGGCGCCGCCACAGTCATCTCTCCCGACCAAGTCGACCTCGC
CGCCGCCGCTGGTGCTTCATTTATCAGCTGTCCCCACACCGACCCAGTCA
TTCTGGCGCGTGCCAAGGCCCATGGCCTCCTTGTCCTGCCCGGGATCCTC
ACCCCCAGCGAAGCATTCCTTGCGCTTAACCACGGTGCGCACGTCCTCAA
ACTTTTCCCTTCTCAAGCAGCGCCGCCTGGAATGGTGGCGTCGATCGCGG
CTGTACTACCTCCTCCTGCCCGTTTGTTGGTATCGGGAGGGGTGCAGGCG
GTAGATATGCCTGCTTACATTGCAGGGGGTGCCACGGGCTTTGCCTTGGG
CTCAACGTTGTTCAAACCTGGATTGAAGGAGGGGGAACTAGCGGAGAGGG
CTCGAGTGTTTGTCACGGCATTGAGAGTAGGGCAGACGGAGAAGGAGAAG
GAGAGGAAGAAGAAAGAGAAACTATAGAATATAGGTCCCAGAGGGAGGGA
GGGAGGGG
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Coding sequence (CDS) from alignment at scaffold_18:430757..431814+

>mRNA_6683 ID=mRNA_6683|Name=jgi.p|Nanoce1779_2|597707|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_18:430757..431814+ (Nannochloropsis oceanica)
ATGCGCGCCCTGGCTGGGTCTCGCTCAGCTGCCTGGCCACTCCTACTACT
GCTTGGAAATGGTGGTAATGCTTGGACATTGACTTCATCGTTTCTTCTTC
AACAAAGCAGCTGCGGAACACCACCCTCCCCCATGTCCCCTGCCTGCCGC
CTTGTCGAAAGACAAACCCACCTAATAAAGGCCGCGGCCAGACCCTTCGT
CGACAACGATGTGGCGTGGCTTTCCCGGCAAGAACCGGTCTCGTCCACTC
AACAGCATCACGATCCCCACCACACCACCATTGATACCATCCCCAGCACC
TCAATGAGTCCTAAAGAAGCCCACGCCTTGGTGTGCCTTGACGCCTGTCC
GCTCGTTGCCGTCTTGCGTGGTGTAGCTGCGGTGGACCTGCCAAAGGTGG
TAATGACCTTGCGGCAAGAAGGGCTGACCATGATCAGCATACCTGCCGAG
TCCCCTGCCGGCTTGGAAGGCCTCCGGGCTCTTACCTCTTCTTCCTCCTC
CCTCTCCTCCACCTCCTTCCCCGAGCAGAAGCCTCTCCCCTTTGCCCTTG
GCGCCGCCACAGTCATCTCTCCCGACCAAGTCGACCTCGCCGCCGCCGCT
GGTGCTTCATTTATCAGCTGTCCCCACACCGACCCAGTCATTCTGGCGCG
TGCCAAGGCCCATGGCCTCCTTGTCCTGCCCGGGATCCTCACCCCCAGCG
AAGCATTCCTTGCGCTTAACCACGGTGCGCACGTCCTCAAACTTTTCCCT
TCTCAAGCAGCGCCGCCTGGAATGGTGGCGTCGATCGCGGCTGTACTACC
TCCTCCTGCCCGTTTGTTGGTATCGGGAGGGGTGCAGGCGGTAGATATGC
CTGCTTACATTGCAGGGGGTGCCACGGGCTTTGCCTTGGGCTCAACGTTG
TTCAAACCTGGATTGAAGGAGGGGGAACTAGCGGAGAGGGCTCGAGTGTT
TGTCACGGCATTGAGAGTAGGGCAGACGGAGAAGGAGAAGGAGAGGAAGA
AGAAAGAGAAACTATAG
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Synonyms
Publications