jgi.p|Nanoce1779_2|597704, mRNA_6682 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597704
Unique Name	mRNA_6682
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2353
Alignment location	scaffold_18:428314..430666 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597790
Track	FilteredModels2
ProteinId	597704

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:428314..430666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597704	gene_6682	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597704	mRNA_6682-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6682	CDS_6682	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:428314..430666+
coding sequence from alignment at scaffold_18:428314..430666+

mRNA sequence

>mRNA_6682 ID=mRNA_6682|Name=jgi.p|Nanoce1779_2|597704|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp
ACAGGTCAAACATGAGCGTCTCCACGTCCATCCTCCCCGAGACATGTGTG
GCTGTCATTCGCTTCAGCAACCCTCCCGTGAACGCCCTCTCTAAAGCTAC
GTGCAGAGCCCTCCATCACGCCGTGGCCGCCGCAAAGAAGGACGCCAGGG
TCCGGGCCATTCTTCTGATTGCTGGGGAAGGGCTGCCCTTTTCCGGCGGT
GCAGACATCAAGGAATTCGACACTTCCCCGTCTCGAAGTAATGAAGTTGG
ACCGCTCAGTCTGCTGATTGAGGAGATGGAGGCCGCAACCATCCCCGTGG
TCGCCTGCATCCATAATTACGCCTTCGGCGGAGGGCTAGAGCTCGCCCTC
GCTTGCCATTACCGCGTCGCCATGCCCGATGCCCGTCTGGGCCTTCCAGA
GGTCAAACTTGGCTTGATTCCAGGAGCAGGAGGGACGCAGCGACTGCCGC
GGCTGGTGGGATTGGAAATAGCGTTGAAGATGATTGTGACAGGGAACCCT
ATTCCGGCCACCGCCGCGCACAAGTCAGGCTTAGTAGACGTGCTTGTGGG
GGACGGGAAGGGAGGAGATGCCGCGTTAATGCAAGCGTCATTAGCATTCG
TCTGTCCGAAAAGAGGGGCAGCGGTGCCTGTACGTCGTGCGATTGACTTG
CAAGTACCCGAGTTTGCTGCAAGCTCGTCCTCCTCTTCTACTTCCTCCTC
GACATCCCCCCCCTTGGAACTCTGTCATAGTCTGGCCAAGAAATCAGGAA
TCAAGATAGACGTGCCTACTCGTGGTGGAACGGCACAGCATGGGTGCTGT
GAGGCTATAGCAGCGGCCGCTTTGCTTGACCCTCAGGAAGGCCTGCGGAT
AGAAACGAGCATCTTCAATCGCTTACTACAAAGCGAGGAGTCCAAAGCCC
GCCGTCACGTCTTTTTCAGTGAGCGGATGGTGGCATTGAATCATCACGCG
GATCTAGCTGGGAGTACACCTATAATGAAACATGTCGGGGTGGTTGGTGG
GGGCACCATGGGGGCAGGCATAGCGGTTGCCTTCCTTGATGCCGGCGTGC
GGGTTACGCTAGTCGAGGTGCAAGCCGAGGCCTTGGCAAGAGCACATAAG
GTGGTCCAGGGGATAATAACCTCCCGTGTTCGTCGAGGCCAAATGACACC
AGGGCAGGCGGCGGCATTGGCGACTAGTGGGCGATTCCACGGGACCTTGT
CCATACAGGATTTAGGGGAGTGTGACATGGTGGTGGAGGCTGTGTATGAG
GACATGGCGTTGAAAAAAGATATTTTCATGAGGTTGGATTCTCATTGTTC
GCCGAAAACGATATTGGCGACAAACACGAGTACATTGTCGATTGACGAGA
TCGCAAAGTGCACGAAGAGAGAGGGGCGGGTGATAGGCATGCATTTCTTT
TCCCCGGCGCATCTTATGAAGTTGGTGGAGGTGGTGAAGGGGGCCAAGAC
GTTACCTGAGACGATAGCGGCGGTAGCGGCGGTGACCAAGCCGATGAAGA
AGGTGTGTGTAGTTGTAGGGAATTGTGACGGATTTGTGGGGAATCGAATG
TTGTTTAGTTATCAAAAGGAGTTACAGTTTATGGTGGAAGAGGGCGCTGA
CCCCTACCGCATCGACAAACTGCTCTTTGACTTCGGCTTTCCCGTCGGAC
CCTTCGTCATGTCTGATATTGCCGGCCTAGACGTCGCCTTACGGATCAAG
CAACATCGCCAACGTCGACTCCGGCAGCAAAACGGTAGCATCACGCGAAC
AGCAGCAGTAGAACGAGAAACAGACGTGGCCGACAAGCTCTGCGAGCTCA
CCGGGAGGCTGGGACAAAAGAATGGTCTTGGCTGGTATAAATACGATCCT
TCCATCGGTAAAGGCCGCACGCCTCTCCCTGATCCCACCGTGCAGACGTT
CCTTGAAAAGTACCGCAAGACCAAGGGGATGGAACCCCGCAGCCCTCCAC
ATACGGACAAGGAGATTCTGGAGCGCAGTTTGTTCCCTCTCCTGAACGAA
GGGATAAAAATTCTCGAGGAGGGAATCGCGACAAATGGTGGGGATATTGA
CATTGTCTGGATTTATGGTTATGGTTTCCCGGCATGGCGGGGAGGGCCGA
TGTACTATGCGGAGCATCACGTGGGTTTACCCAAGCTCTTGGCAGGGTTG
GAGTGCTATGCAAGGCAGTATCCACAGAGCCCACATTTCAAACCCGCCAA
TTTGTTGCGGGAGCTGGTGCGCAAGAGCCAGGGTTTGGTGGCGCGGTTGT
AGTGGTTTGATAATGATAGGATGAAAAGTAAGACGAAAGAACGAAACACA
GTCTAGTCCGAATGATGGGCCAGTCGGACTCCGGAGCTCGTACTTTCTTC
GCC

protein sequence of jgi.p|Nanoce1779_2|597704

>mRNA_6682-protein ID=mRNA_6682-protein|Name=jgi.p|Nanoce1779_2|597704|organism=Nannochloropsis oceanica|type=polypeptide|length=747bp
MSVSTSILPETCVAVIRFSNPPVNALSKATCRALHHAVAAAKKDARVRAI
LLIAGEGLPFSGGADIKEFDTSPSRSNEVGPLSLLIEEMEAATIPVVACI
HNYAFGGGLELALACHYRVAMPDARLGLPEVKLGLIPGAGGTQRLPRLVG
LEIALKMIVTGNPIPATAAHKSGLVDVLVGDGKGGDAALMQASLAFVCPK
RGAAVPVRRAIDLQVPEFAASSSSSSTSSSTSPPLELCHSLAKKSGIKID
VPTRGGTAQHGCCEAIAAAALLDPQEGLRIETSIFNRLLQSEESKARRHV
FFSERMVALNHHADLAGSTPIMKHVGVVGGGTMGAGIAVAFLDAGVRVTL
VEVQAEALARAHKVVQGIITSRVRRGQMTPGQAAALATSGRFHGTLSIQD
LGECDMVVEAVYEDMALKKDIFMRLDSHCSPKTILATNTSTLSIDEIAKC
TKREGRVIGMHFFSPAHLMKLVEVVKGAKTLPETIAAVAAVTKPMKKVCV
VVGNCDGFVGNRMLFSYQKELQFMVEEGADPYRIDKLLFDFGFPVGPFVM
SDIAGLDVALRIKQHRQRRLRQQNGSITRTAAVERETDVADKLCELTGRL
GQKNGLGWYKYDPSIGKGRTPLPDPTVQTFLEKYRKTKGMEPRSPPHTDK
EILERSLFPLLNEGIKILEEGIATNGGDIDIVWIYGYGFPAWRGGPMYYA
EHHVGLPKLLAGLECYARQYPQSPHFKPANLLRELVRKSQGLVARL*

mRNA from alignment at scaffold_18:428314..430666+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6682 ID=mRNA_6682|Name=jgi.p|Nanoce1779_2|597704|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at scaffold_18:428314..430666+ (Nannochloropsis oceanica)
ACAGGTCAAACATGAGCGTCTCCACGTCCATCCTCCCCGAGACATGTGTG
GCTGTCATTCGCTTCAGCAACCCTCCCGTGAACGCCCTCTCTAAAGCTAC
GTGCAGAGCCCTCCATCACGCCGTGGCCGCCGCAAAGAAGGACGCCAGGG
TCCGGGCCATTCTTCTGATTGCTGGGGAAGGGCTGCCCTTTTCCGGCGGT
GCAGACATCAAGGAATTCGACACTTCCCCGTCTCGAAGTAATGAAGTTGG
ACCGCTCAGTCTGCTGATTGAGGAGATGGAGGCCGCAACCATCCCCGTGG
TCGCCTGCATCCATAATTACGCCTTCGGCGGAGGGCTAGAGCTCGCCCTC
GCTTGCCATTACCGCGTCGCCATGCCCGATGCCCGTCTGGGCCTTCCAGA
GGTCAAACTTGGCTTGATTCCAGGAGCAGGAGGGACGCAGCGACTGCCGC
GGCTGGTGGGATTGGAAATAGCGTTGAAGATGATTGTGACAGGGAACCCT
ATTCCGGCCACCGCCGCGCACAAGTCAGGCTTAGTAGACGTGCTTGTGGG
GGACGGGAAGGGAGGAGATGCCGCGTTAATGCAAGCGTCATTAGCATTCG
TCTGTCCGAAAAGAGGGGCAGCGGTGCCTGTACGTCGTGCGATTGACTTG
CAAGTACCCGAGTTTGCTGCAAGCTCGTCCTCCTCTTCTACTTCCTCCTC
GACATCCCCCCCCTTGGAACTCTGTCATAGTCTGGCCAAGAAATCAGGAA
TCAAGATAGACGTGCCTACTCGTGGTGGAACGGCACAGCATGGGTGCTGT
GAGGCTATAGCAGCGGCCGCTTTGCTTGACCCTCAGGAAGGCCTGCGGAT
AGAAACGAGCATCTTCAATCGCTTACTACAAAGCGAGGAGTCCAAAGCCC
GCCGTCACGTCTTTTTCAGTGAGCGGATGGTGGCATTGAATCATCACGCG
GATCTAGCTGGGAGTACACCTATAATGAAACATGTCGGGGTGGTTGGTGG
GGGCACCATGGGGGCAGGCATAGCGGTTGCCTTCCTTGATGCCGGCGTGC
GGGTTACGCTAGTCGAGGTGCAAGCCGAGGCCTTGGCAAGAGCACATAAG
GTGGTCCAGGGGATAATAACCTCCCGTGTTCGTCGAGGCCAAATGACACC
AGGGCAGGCGGCGGCATTGGCGACTAGTGGGCGATTCCACGGGACCTTGT
CCATACAGGATTTAGGGGAGTGTGACATGGTGGTGGAGGCTGTGTATGAG
GACATGGCGTTGAAAAAAGATATTTTCATGAGGTTGGATTCTCATTGTTC
GCCGAAAACGATATTGGCGACAAACACGAGTACATTGTCGATTGACGAGA
TCGCAAAGTGCACGAAGAGAGAGGGGCGGGTGATAGGCATGCATTTCTTT
TCCCCGGCGCATCTTATGAAGTTGGTGGAGGTGGTGAAGGGGGCCAAGAC
GTTACCTGAGACGATAGCGGCGGTAGCGGCGGTGACCAAGCCGATGAAGA
AGGTGTGTGTAGTTGTAGGGAATTGTGACGGATTTGTGGGGAATCGAATG
TTGTTTAGTTATCAAAAGGAGTTACAGTTTATGGTGGAAGAGGGCGCTGA
CCCCTACCGCATCGACAAACTGCTCTTTGACTTCGGCTTTCCCGTCGGAC
CCTTCGTCATGTCTGATATTGCCGGCCTAGACGTCGCCTTACGGATCAAG
CAACATCGCCAACGTCGACTCCGGCAGCAAAACGGTAGCATCACGCGAAC
AGCAGCAGTAGAACGAGAAACAGACGTGGCCGACAAGCTCTGCGAGCTCA
CCGGGAGGCTGGGACAAAAGAATGGTCTTGGCTGGTATAAATACGATCCT
TCCATCGGTAAAGGCCGCACGCCTCTCCCTGATCCCACCGTGCAGACGTT
CCTTGAAAAGTACCGCAAGACCAAGGGGATGGAACCCCGCAGCCCTCCAC
ATACGGACAAGGAGATTCTGGAGCGCAGTTTGTTCCCTCTCCTGAACGAA
GGGATAAAAATTCTCGAGGAGGGAATCGCGACAAATGGTGGGGATATTGA
CATTGTCTGGATTTATGGTTATGGTTTCCCGGCATGGCGGGGAGGGCCGA
TGTACTATGCGGAGCATCACGTGGGTTTACCCAAGCTCTTGGCAGGGTTG
GAGTGCTATGCAAGGCAGTATCCACAGAGCCCACATTTCAAACCCGCCAA
TTTGTTGCGGGAGCTGGTGCGCAAGAGCCAGGGTTTGGTGGCGCGGTTGT
AGTGGTTTGATAATGATAGGATGAAAAGTAAGACGAAAGAACGAAACACA
GTCTAGTCCGAATGATGGGCCAGTCGGACTCCGGAGCTCGTACTTTCTTC
GCC

Coding sequence (CDS) from alignment at scaffold_18:428314..430666+

>mRNA_6682 ID=mRNA_6682|Name=jgi.p|Nanoce1779_2|597704|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at scaffold_18:428314..430666+ (Nannochloropsis oceanica)
ATGAGCGTCTCCACGTCCATCCTCCCCGAGACATGTGTGGCTGTCATTCG
CTTCAGCAACCCTCCCGTGAACGCCCTCTCTAAAGCTACGTGCAGAGCCC
TCCATCACGCCGTGGCCGCCGCAAAGAAGGACGCCAGGGTCCGGGCCATT
CTTCTGATTGCTGGGGAAGGGCTGCCCTTTTCCGGCGGTGCAGACATCAA
GGAATTCGACACTTCCCCGTCTCGAAGTAATGAAGTTGGACCGCTCAGTC
TGCTGATTGAGGAGATGGAGGCCGCAACCATCCCCGTGGTCGCCTGCATC
CATAATTACGCCTTCGGCGGAGGGCTAGAGCTCGCCCTCGCTTGCCATTA
CCGCGTCGCCATGCCCGATGCCCGTCTGGGCCTTCCAGAGGTCAAACTTG
GCTTGATTCCAGGAGCAGGAGGGACGCAGCGACTGCCGCGGCTGGTGGGA
TTGGAAATAGCGTTGAAGATGATTGTGACAGGGAACCCTATTCCGGCCAC
CGCCGCGCACAAGTCAGGCTTAGTAGACGTGCTTGTGGGGGACGGGAAGG
GAGGAGATGCCGCGTTAATGCAAGCGTCATTAGCATTCGTCTGTCCGAAA
AGAGGGGCAGCGGTGCCTGTACGTCGTGCGATTGACTTGCAAGTACCCGA
GTTTGCTGCAAGCTCGTCCTCCTCTTCTACTTCCTCCTCGACATCCCCCC
CCTTGGAACTCTGTCATAGTCTGGCCAAGAAATCAGGAATCAAGATAGAC
GTGCCTACTCGTGGTGGAACGGCACAGCATGGGTGCTGTGAGGCTATAGC
AGCGGCCGCTTTGCTTGACCCTCAGGAAGGCCTGCGGATAGAAACGAGCA
TCTTCAATCGCTTACTACAAAGCGAGGAGTCCAAAGCCCGCCGTCACGTC
TTTTTCAGTGAGCGGATGGTGGCATTGAATCATCACGCGGATCTAGCTGG
GAGTACACCTATAATGAAACATGTCGGGGTGGTTGGTGGGGGCACCATGG
GGGCAGGCATAGCGGTTGCCTTCCTTGATGCCGGCGTGCGGGTTACGCTA
GTCGAGGTGCAAGCCGAGGCCTTGGCAAGAGCACATAAGGTGGTCCAGGG
GATAATAACCTCCCGTGTTCGTCGAGGCCAAATGACACCAGGGCAGGCGG
CGGCATTGGCGACTAGTGGGCGATTCCACGGGACCTTGTCCATACAGGAT
TTAGGGGAGTGTGACATGGTGGTGGAGGCTGTGTATGAGGACATGGCGTT
GAAAAAAGATATTTTCATGAGGTTGGATTCTCATTGTTCGCCGAAAACGA
TATTGGCGACAAACACGAGTACATTGTCGATTGACGAGATCGCAAAGTGC
ACGAAGAGAGAGGGGCGGGTGATAGGCATGCATTTCTTTTCCCCGGCGCA
TCTTATGAAGTTGGTGGAGGTGGTGAAGGGGGCCAAGACGTTACCTGAGA
CGATAGCGGCGGTAGCGGCGGTGACCAAGCCGATGAAGAAGGTGTGTGTA
GTTGTAGGGAATTGTGACGGATTTGTGGGGAATCGAATGTTGTTTAGTTA
TCAAAAGGAGTTACAGTTTATGGTGGAAGAGGGCGCTGACCCCTACCGCA
TCGACAAACTGCTCTTTGACTTCGGCTTTCCCGTCGGACCCTTCGTCATG
TCTGATATTGCCGGCCTAGACGTCGCCTTACGGATCAAGCAACATCGCCA
ACGTCGACTCCGGCAGCAAAACGGTAGCATCACGCGAACAGCAGCAGTAG
AACGAGAAACAGACGTGGCCGACAAGCTCTGCGAGCTCACCGGGAGGCTG
GGACAAAAGAATGGTCTTGGCTGGTATAAATACGATCCTTCCATCGGTAA
AGGCCGCACGCCTCTCCCTGATCCCACCGTGCAGACGTTCCTTGAAAAGT
ACCGCAAGACCAAGGGGATGGAACCCCGCAGCCCTCCACATACGGACAAG
GAGATTCTGGAGCGCAGTTTGTTCCCTCTCCTGAACGAAGGGATAAAAAT
TCTCGAGGAGGGAATCGCGACAAATGGTGGGGATATTGACATTGTCTGGA
TTTATGGTTATGGTTTCCCGGCATGGCGGGGAGGGCCGATGTACTATGCG
GAGCATCACGTGGGTTTACCCAAGCTCTTGGCAGGGTTGGAGTGCTATGC
AAGGCAGTATCCACAGAGCCCACATTTCAAACCCGCCAATTTGTTGCGGG
AGCTGGTGCGCAAGAGCCAGGGTTTGGTGGCGCGGTTGTAG

Synonyms

Publications