jgi.p|Nanoce1779_2|632084, mRNA_6680 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632084
Unique NamemRNA_6680
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2086
Alignment locationscaffold_18:424122..426361 -

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Properties
Property NameValue
TranscriptId632170
TrackFilteredModels2
ProteinId632084
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:424122..426361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632084gene_6680Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632084mRNA_6680-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6680CDS_6680Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6680 ID=mRNA_6680|Name=jgi.p|Nanoce1779_2|632084|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp
AACAGTTATAAGGCACTGGGAGGCGTGACACAACTATCAATAGCCCGTGG
ACCATCCGTGACCGCCGCAGCGGCAATCACCACAGTATAGCGCAGGAGCG
AGAAAATTAGTTGAGGTTCCCACACATGGCCGGTCTCGTTCCAACCGCCT
TTTCGATCTTGACTTGGAACATTTACTTTGCGCCGCATCAATGGGCAACG
CGGATGCAACATATTTTAGCCGAGTGTGAGCGATTACAGCCGGACGTGCT
GTGCTTTCAAGAGGTTTTGCCACCCTTTATGGCTTTGTTGCAGGACGAAG
AAAAGCCGACGGAGTTGATGATCAGCTCCAATAACGACGAAAACGCCAGC
GGTGGCCGCAACAGCTGGCTGGCACGGAATGACTACATATGTTCAACCCT
TGATCCTAAAGGGATTGTACCTTACGGCGTGTTGACGATGGTCAAACGCA
AGCATCGCCCCCACTTCCAGAGCCTGGATTTACCAAGCCGCATGGGAAGA
AGACTGCTCTTGACCCACCTTGAAAGTATGGGGCGGGGAGTCGAGGGAGA
AGAAGTCGAAAGTAAAGGAAAACTAATTGAAGAGTGGATCATAGGTAATG
TTCACTTGGAGTCCTTGGATTCCACGACGCTGCGGGCGGAGCAGTTGAGA
AATGCCGGTGTGAGCCTGAGCTTGAAGGAGGAGAGGATAAATGTAGTCCT
GTGCGGGGACTTTAATTTCTGCTCGGAACGCAATTACGACATTGGCGACT
CCTTACAGAGTCTTGAGAACGAAGTTCTCCCGTTGGCACTACCCTCTTTC
CAAGACCTATGGCCCTCGGTGAAAAAAGGGACCAAAGAGGAGAAAGAAGG
CTTCACATTCGACGGGACGAGAAACACACTCATTCGCATGCCACGACCAG
ACCCGCAAATGCGGTACGACAGGGTGTTGTGGAGGGGAACTGGACGGAAA
GAGCAGCAGCAGCAGCAGCAGCAGAAGCTCCAGAAATTCCAGAATCAGGC
GCAAGAGAAATTGAAAGGCTCGATGGCGGAAGTGGCAGGGAGGGGGTGGA
GGCCACGCGATATACGTTTGGTGGGAACTGATCCGGTGAAGGGAGGTCTG
TTCCTCTCCGACCATTTTGGGCTGCTTGCCACGTTTGAAAAAGAGCAATG
ATGCCCATATAGAACAGAGGAGAATCTGGAAATATAAGGTGTACACAGCG
CAAAGTAAGTTGAGCACATAGACGTAAAAAAACAATGATTGATGCTGCTG
TTTTTAATTTGCGCATTCATTTTTTCGATAATCTATGCGTGTGGTTGTGG
CTGTGGCGATATTGACGAAGAGGGCGAGGAAAAGGAAGAGGGCGGCGATT
GAGGAATTGTTGTCATCGGTTTTGTGGAAGACAGCAAAGTAGACGGTATT
CCTGGTACTGTAGATTGCTGCTGCTGCCGCTGTTGCTCCTCCTCAACCTT
TTCTCGGAGTGTAGGCTGTGTGAAGAATGCGGAGCTCCACGGACCCACTT
CATCAACAGGCCGACTTTTAAGGACTGTAATGATGTTACGAGAATGACAA
TTAACATGTATCGAACAGTAACAAATGTGGTTTTTAAACGAAAGGAAAGA
GGTATGGGAAAACTTATGAGATCATGTACAAAAGTTGCTTTCGCACCCGC
TGACGTTTCAGGAGGAGGGAGGAGCGTACACTTGCCACAGGTGCTTTGTC
ATAATTGTTCTCTTCGAGCAATTGGAGTGAGTGGAGGTGTGTCCCTCCAG
AGCACGAGACTTCTACACTAATCTACCGGCATAAACGTACCTTCTGACAT
ATAAAGTCTCATGATGCTTTTCACCTCGGGATGCCGTCTCATGTAGTCCT
CGTTCTCTGTCCGAAGTTGCGCACGATTTTTAGTTGGATGTACGTCCATG
ATGGCGGGGGAGGGAATTGTGGCGTTACTGCTGTTGCTGCTGCTGGGGGT
AGTGGTTGTCGTATCCGTAAAGCAGGATGGGGCAGGCAGTTGGGCTTGGG
CTGGTTGTCCTGCGTCGTTTTGCCGGGTGGTAGAGCCATTCCTGCTGATG
CTGGTGGCCCTAAGTGTGCTCTCACTCATGGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|632084

>mRNA_6680-protein ID=mRNA_6680-protein|Name=jgi.p|Nanoce1779_2|632084|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MAGLVPTAFSILTWNIYFAPHQWATRMQHILAECERLQPDVLCFQEVLPP
FMALLQDEEKPTELMISSNNDENASGGRNSWLARNDYICSTLDPKGIVPY
GVLTMVKRKHRPHFQSLDLPSRMGRRLLLTHLESMGRGVEGEEVESKGKL
IEEWIIGNVHLESLDSTTLRAEQLRNAGVSLSLKEERINVVLCGDFNFCS
ERNYDIGDSLQSLENEVLPLALPSFQDLWPSVKKGTKEEKEGFTFDGTRN
TLIRMPRPDPQMRYDRVLWRGTGRKEQQQQQQQKLQKFQNQAQEKLKGSM
AEVAGRGWRPRDIRLVGTDPVKGGLFLSDHFGLLATFEKEQ*
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mRNA from alignment at scaffold_18:424122..426361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6680 ID=mRNA_6680|Name=jgi.p|Nanoce1779_2|632084|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp|location=Sequence derived from alignment at scaffold_18:424122..426361- (Nannochloropsis oceanica)
AACAGTTATAAGGCACTGGGAGGCGTGACACAACTATCAATAGCCCGTGG
ACCATCCGTGACCGCCGCAGCGGCAATCACCACAGTATAGCGCAGGAGCG
AGAAAATTAGTTGAGGTTCCCACACATGGCCGGTCTCGTTCCAACCGCCT
TTTCGATCTTGACTTGGAACATTTACTTTGCGCCGCATCAATGGGCAACG
CGGATGCAACATATTTTAGCCGAGTGTGAGCGATTACAGCCGGACGTGCT
GTGCTTTCAAGAGGTTTTGCCACCCTTTATGGCTTTGTTGCAGGACGAAG
AAAAGCCGACGGAGTTGATGATCAGCTCCAATAACGACGAAAACGCCAGC
GGTGGCCGCAACAGCTGGCTGGCACGGAATGACTACATATGTTCAACCCT
TGATCCTAAAGGGATTGTACCTTACGGCGTGTTGACGATGGTCAAACGCA
AGCATCGCCCCCACTTCCAGAGCCTGGATTTACCAAGCCGCATGGGAAGA
AGACTGCTCTTGACCCACCTTGAAAGTATGGGGCGGGGAGTCGAGGGAGA
AGAAGTCGAAAGTAAAGGAAAACTAATTGAAGAGTGGATCATAGGTAATG
TTCACTTGGAGTCCTTGGATTCCACGACGCTGCGGGCGGAGCAGTTGAGA
AATGCCGGTGTGAGCCTGAGCTTGAAGGAGGAGAGGATAAATGTAGTCCT
GTGCGGGGACTTTAAGTAAGTGGGGTTGGTGTGTATTTCACTCGACAAGT
CGAAGGTGGGTGTGTATATTTCATTCTGGTATCAAACAATGGAAGATGCA
TTCTCAGGCACCGACATGCCCTTTCGCCTCCCCCCTCCTCCCGTCCTCCA
CTTCCTTTCCCCCGCCCAGTTTCTGCTCGGAACGCAATTACGACATTGGC
GACTCCTTACAGAGTCTTGAGAACGAAGTTCTCCCGTTGGCACTACCCTC
TTTCCAAGACCTATGGCCCTCGGTGAAAAAAGGGACCAAAGAGGAGAAAG
AAGGCTTCACATTCGACGGGACGAGAAACACACTCATTCGCATGCCACGA
CCAGACCCGCAAATGCGGTACGACAGGGTGTTGTGGAGGGGAACTGGACG
GAAAGAGCAGCAGCAGCAGCAGCAGCAGAAGCTCCAGAAATTCCAGAATC
AGGCGCAAGAGAAATTGAAAGGCTCGATGGCGGAAGTGGCAGGGAGGGGG
TGGAGGCCACGCGATATACGTTTGGTGGGAACTGATCCGGTGAAGGGAGG
TCTGTTCCTCTCCGACCATTTTGGGCTGCTTGCCACGTTTGAAAAAGAGC
AATGATGCCCATATAGAACAGAGGAGAATCTGGAAATATAAGGTGTACAC
AGCGCAAAGTAAGTTGAGCACATAGACGTAAAAAAACAATGATTGATGCT
GCTGTTTTTAATTTGCGCATTCATTTTTTCGATAATCTATGCGTGTGGTT
GTGGCTGTGGCGATATTGACGAAGAGGGCGAGGAAAAGGAAGAGGGCGGC
GATTGAGGAATTGTTGTCATCGGTTTTGTGGAAGACAGCAAAGTAGACGG
TATTCCTGGTACTGTAGATTGCTGCTGCTGCCGCTGTTGCTCCTCCTCAA
CCTTTTCTCGGAGTGTAGGCTGTGTGAAGAATGCGGAGCTCCACGGACCC
ACTTCATCAACAGGCCGACTTTTAAGGACTGTAATGATGTTACGAGAATG
ACAATTAACATGTATCGAACAGTAACAAATGTGGTTTTTAAACGAAAGGA
AAGAGGTATGGGAAAACTTATGAGATCATGTACAAAAGTTGCTTTCGCAC
CCGCTGACGTTTCAGGAGGAGGGAGGAGCGTACACTTGCCACAGGTGCTT
TGTCATAATTGTTCTCTTCGAGCAATTGGAGTGAGTGGAGGTGTGTCCCT
CCAGAGCACGAGACTTCTACACTAATCTACCGGCATAAACGTACCTTCTG
ACATATAAAGTCTCATGATGCTTTTCACCTCGGGATGCCGTCTCATGTAG
TCCTCGTTCTCTGTCCGAAGTTGCGCACGATTTTTAGTTGGATGTACGTC
CATGATGGCGGGGGAGGGAATTGTGGCGTTACTGCTGTTGCTGCTGCTGG
GGGTAGTGGTTGTCGTATCCGTAAAGCAGGATGGGGCAGGCAGTTGGGCT
TGGGCTGGTTGTCCTGCGTCGTTTTGCCGGGTGGTAGAGCCATTCCTGCT
GATGCTGGTGGCCCTAAGTGTGCTCTCACTCATGGCCTGT
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Coding sequence (CDS) from alignment at scaffold_18:424122..426361-

>mRNA_6680 ID=mRNA_6680|Name=jgi.p|Nanoce1779_2|632084|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_18:424122..426361- (Nannochloropsis oceanica)
TTTCTGCTCGGAACGCAATTACGACATTGGCGACTCCTTACAGAGTCTTG
AGAACGAAGTTCTCCCGTTGGCACTACCCTCTTTCCAAGACCTATGGCCC
TCGGTGAAAAAAGGGACCAAAGAGGAGAAAGAAGGCTTCACATTCGACGG
GACGAGAAACACACTCATTCGCATGCCACGACCAGACCCGCAAATGCGGT
ACGACAGGGTGTTGTGGAGGGGAACTGGACGGAAAGAGCAGCAGCAGCAG
CAGCAGCAGAAGCTCCAGAAATTCCAGAATCAGGCGCAAGAGAAATTGAA
AGGCTCGATGGCGGAAGTGGCAGGGAGGGGGTGGAGGCCACGCGATATAC
GTTTGGTGGGAACTGATCCGGTGAAGGGAGGTCTGTTCCTCTCCGACCAT
TTTGGGCTGCTTGCCACGTTTGAAAAAGAGCAATGAATGGCCGGTCTCGT
TCCAACCGCCTTTTCGATCTTGACTTGGAACATTTACTTTGCGCCGCATC
AATGGGCAACGCGGATGCAACATATTTTAGCCGAGTGTGAGCGATTACAG
CCGGACGTGCTGTGCTTTCAAGAGGTTTTGCCACCCTTTATGGCTTTGTT
GCAGGACGAAGAAAAGCCGACGGAGTTGATGATCAGCTCCAATAACGACG
AAAACGCCAGCGGTGGCCGCAACAGCTGGCTGGCACGGAATGACTACATA
TGTTCAACCCTTGATCCTAAAGGGATTGTACCTTACGGCGTGTTGACGAT
GGTCAAACGCAAGCATCGCCCCCACTTCCAGAGCCTGGATTTACCAAGCC
GCATGGGAAGAAGACTGCTCTTGACCCACCTTGAAAGTATGGGGCGGGGA
GTCGAGGGAGAAGAAGTCGAAAGTAAAGGAAAACTAATTGAAGAGTGGAT
CATAGGTAATGTTCACTTGGAGTCCTTGGATTCCACGACGCTGCGGGCGG
AGCAGTTGAGAAATGCCGGTGTGAGCCTGAGCTTGAAGGAGGAGAGGATA
AATGTAGTCCTGTGCGGGGACTTTAATTTCTGCTCGGAACGCAATTACGA
CATTGGCGACTCCTTACAGAGTCTTGAGAACGAAGTTCTCCCGTTGGCAC
TACCCTCTTTCCAAGACCTATGGCCCTCGGTGAAAAAAGGGACCAAAGAG
GAGAAAGAAGGCTTCACATTCGACGGGACGAGAAACACACTCATTCGCAT
GCCACGACCAGACCCGCAAATGCGGTACGACAGGGTGTTGTGGAGGGGAA
CTGGACGGAAAGAGCAGCAGCAGCAGCAGCAGCAGAAGCTCCAGAAATTC
CAGAATCAGGCGCAAGAGAAATTGAAAGGCTCGATGGCGGAAGTGGCAGG
GAGGGGGTGGAGGCCACGCGATATACGTTTGGTGGGAACTGATCCGGTGA
AGGGAGGTCTGTTCCTCTCCGACCATTTTGGGCTGCTTGCCACGTTTGAA
AAAGAGCAATGAATGGCCGGTCTCGTTCCAACCGCCTTTTCGATCTTGAC
TTGGAACATTTACTTTGCGCCGCATCAATGGGCAACGCGGATGCAACATA
TTTTAGCCGAGTGTGAGCGATTACAGCCGGACGTGCTGTGCTTTCAAGAG
GTTTTGCCACCCTTTATGGCTTTGTTGCAGGACGAAGAAAAGCCGACGGA
GTTGATGATCAGCTCCAATAACGACGAAAACGCCAGCGGTGGCCGCAACA
GCTGGCTGGCACGGAATGACTACATATGTTCAACCCTTGATCCTAAAGGG
ATTGTACCTTACGGCGTGTTGACGATGGTCAAACGCAAGCATCGCCCCCA
CTTCCAGAGCCTGGATTTACCAAGCCGCATGGGAAGAAGACTGCTCTTGA
CCCACCTTGAAAGTATGGGGCGGGGAGTCGAGGGAGAAGAAGTCGAAAGT
AAAGGAAAACTAATTGAAGAGTGGATCATAGGTAATGTTCACTTGGAGTC
CTTGGATTCCACGACGCTGCGGGCGGAGCAGTTGAGAAATGCCGGTGTGA
GCCTGAGCTTGAAGGAGGAGAGGATAAATGTAGTCCTGTGCGGGGACTTT
AA
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Synonyms
Publications