jgi.p|Nanoce1779_2|597696, mRNA_6679 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597696
Unique NamemRNA_6679
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length922
Alignment locationscaffold_18:424122..425309 +

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Properties
Property NameValue
TranscriptId597782
TrackFilteredModels2
ProteinId597696
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:424122..425309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597696gene_6679Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597696mRNA_6679-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6679CDS_6679Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6679 ID=mRNA_6679|Name=jgi.p|Nanoce1779_2|597696|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
ACAGGCCATGAGTGAGAGCACACTTAGGGCCACCAGCATCAGCAGGAATG
GCTCTACCACCCGGCAAAACGACGCAGGACAACCAGCCCAAGCCCAACTG
CCTGCCCCATCCTGCTTTACGGATACGACAACCACTACCCCCAGCAGCAG
CAACAGCAGTAACGCCACAATTCCCTCCCCCGCCATCATGGACGTACATC
CAACTAAAAATCGTGCGCAACTTCGGACAGAGAACGAGGACTACATGAGA
CGGCATCCCGAGGTGAAAAGCATCATGAGACTTTATATGTCAGAAGTCCT
TAAAAGTCGGCCTGTTGATGAAGTGGGTCCGTGGAGCTCCGCATTCTTCA
CACAGCCTACACTCCGAGAAAAGGTTGAGGAGGAGCAACAGCGGCAGCAG
CAGCAATCTACAGTACCAGGAATACCGTCTACTTTGCTGTCTTCCACAAA
ACCGATGACAACAATTCCTCAATCGCCGCCCTCTTCCTTTTCCTCGCCCT
CTTCGTCAATATCGCCACAGCCACAACCACACGCATAGATTATCGAAAAA
ATGAATGCGCAAATTAAAAACAGCAGCATCAATCATTGTTTTTTTACGTC
TATGTGCTCAACTTACTTTGCGCTGTGTACACCTTATATTTCCAGATTCT
CCTCTGTTCTATATGGGCATCATTGCTCTTTTTCAAACGTGGCAAGCAGC
CCAAAATGGTCGGAGAGGAACAGACCTCCCTTCACCGGATCAGTTCCCAC
CAAACGTATATCGCGTGGCCTCCACCCCCTCCCTGCCACTTCCGCCATCG
AGCCTTTCAATTTCTCTTGCGCCTGATTCTGGAATTTCTGGAGCTTCTGC
TGCTGCTGCTGCTGCTGCTCTTTCCGTCCAGTTCCCCTCCACAACACCCT
GTCGTACCGCATTTGCGGGTCT
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protein sequence of jgi.p|Nanoce1779_2|597696

>mRNA_6679-protein ID=mRNA_6679-protein|Name=jgi.p|Nanoce1779_2|597696|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MSESTLRATSISRNGSTTRQNDAGQPAQAQLPAPSCFTDTTTTTPSSSNS
SNATIPSPAIMDVHPTKNRAQLRTENEDYMRRHPEVKSIMRLYMSEVLKS
RPVDEVGPWSSAFFTQPTLREKVEEEQQRQQQQSTVPGIPSTLLSSTKPM
TTIPQSPPSSFSSPSSSISPQPQPHA*
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mRNA from alignment at scaffold_18:424122..425309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6679 ID=mRNA_6679|Name=jgi.p|Nanoce1779_2|597696|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at scaffold_18:424122..425309+ (Nannochloropsis oceanica)
ACAGGCCATGAGTGAGAGCACACTTAGGGCCACCAGCATCAGCAGGAATG
GCTCTACCACCCGGCAAAACGACGCAGGACAACCAGCCCAAGCCCAACTG
CCTGCCCCATCCTGCTTTACGGATACGACAACCACTACCCCCAGCAGCAG
CAACAGCAGTAACGCCACAATTCCCTCCCCCGCCATCATGGACGTACATC
CAACTAAAAATCGTGCGCAACTTCGGACAGAGAACGAGGACTACATGAGA
CGGCATCCCGAGGTGAAAAGCATCATGAGACTTTATATGTCAGAAGGTAC
GTTTATGCCGGTAGATTAGTGTAGAAGTCTCGTGCTCTGGAGGGACACAC
CTCCACTCACTCCAATTGCTCGAAGAGAACAATTATGACAAAGCACCTGT
GGCAAGTGTACGCTCCTCCCTCCTCCTGAAACGTCAGCGGGTGCGAAAGC
AACTTTTGTACATGATCTCATAAGTTTTCCCATACCTCTTTCCTTTCGTT
TAAAAACCACATTTGTTACTGTTCGATACATGTTAATTGTCATTCTCGTA
ACATCATTACAGTCCTTAAAAGTCGGCCTGTTGATGAAGTGGGTCCGTGG
AGCTCCGCATTCTTCACACAGCCTACACTCCGAGAAAAGGTTGAGGAGGA
GCAACAGCGGCAGCAGCAGCAATCTACAGTACCAGGAATACCGTCTACTT
TGCTGTCTTCCACAAAACCGATGACAACAATTCCTCAATCGCCGCCCTCT
TCCTTTTCCTCGCCCTCTTCGTCAATATCGCCACAGCCACAACCACACGC
ATAGATTATCGAAAAAATGAATGCGCAAATTAAAAACAGCAGCATCAATC
ATTGTTTTTTTACGTCTATGTGCTCAACTTACTTTGCGCTGTGTACACCT
TATATTTCCAGATTCTCCTCTGTTCTATATGGGCATCATTGCTCTTTTTC
AAACGTGGCAAGCAGCCCAAAATGGTCGGAGAGGAACAGACCTCCCTTCA
CCGGATCAGTTCCCACCAAACGTATATCGCGTGGCCTCCACCCCCTCCCT
GCCACTTCCGCCATCGAGCCTTTCAATTTCTCTTGCGCCTGATTCTGGAA
TTTCTGGAGCTTCTGCTGCTGCTGCTGCTGCTGCTCTTTCCGTCCAGTTC
CCCTCCACAACACCCTGTCGTACCGCATTTGCGGGTCT
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Coding sequence (CDS) from alignment at scaffold_18:424122..425309+

>mRNA_6679 ID=mRNA_6679|Name=jgi.p|Nanoce1779_2|597696|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_18:424122..425309+ (Nannochloropsis oceanica)
ATGAGTGAGAGCACACTTAGGGCCACCAGCATCAGCAGGAATGGCTCTAC
CACCCGGCAAAACGACGCAGGACAACCAGCCCAAGCCCAACTGCCTGCCC
CATCCTGCTTTACGGATACGACAACCACTACCCCCAGCAGCAGCAACAGC
AGTAACGCCACAATTCCCTCCCCCGCCATCATGGACGTACATCCAACTAA
AAATCGTGCGCAACTTCGGACAGAGAACGAGGACTACATGAGACGGCATC
CCGAGGTGAAAAGCATCATGAGACTTTATATGTCAGAAGTCCTTAAAAGT
CGGCCTGTTGATGAAGTGGGTCCGTGGAGCTCCGCATTCTTCACACAGCC
TACACTCCGAGAAAAGGTTGAGGAGGAGCAACAGCGGCAGCAGCAGCAAT
CTACAGTACCAGGAATACCGTCTACTTTGCTGTCTTCCACAAAACCGATG
ACAACAATTCCTCAATCGCCGCCCTCTTCCTTTTCCTCGCCCTCTTCGTC
AATATCGCCACAGCCACAACCACACGCATAGATGAGTGAGAGCACACTTA
GGGCCACCAGCATCAGCAGGAATGGCTCTACCACCCGGCAAAACGACGCA
GGACAACCAGCCCAAGCCCAACTGCCTGCCCCATCCTGCTTTACGGATAC
GACAACCACTACCCCCAGCAGCAGCAACAGCAGTAACGCCACAATTCCCT
CCCCCGCCATCATGGACGTACATCCAACTAAAAATCGTGCGCAACTTCGG
ACAGAGAACGAGGACTACATGAGACGGCATCCCGAGGTGAAAAGCATCAT
GAGACTTTATATGTCAGAAGTCCTTAAAAGTCGGCCTGTTGATGAAGTGG
GTCCGTGGAGCTCCGCATTCTTCACACAGCCTACACTCCGAGAAAAGGTT
GAGGAGGAGCAACAGCGGCAGCAGCAGCAATCTACAGTACCAGGAATACC
GTCTACTTTGCTGTCTTCCACAAAACCGATGACAACAATTCCTCAATCGC
CGCCCTCTTCCTTTTCCTCGCCCTCTTCGTCAATATCGCCACAGCCACAA
CCACACGCATAG
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Synonyms
Publications