jgi.p|Nanoce1779_2|597694, mRNA_6678 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597694
Unique Name	mRNA_6678
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2252
Alignment location	scaffold_18:420946..423197 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597780
Track	FilteredModels2
ProteinId	597694

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:420946..423197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597694	gene_6678	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597694	mRNA_6678-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6678	CDS_6678	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:420946..423197+
coding sequence from alignment at scaffold_18:420946..423197+

mRNA sequence

>mRNA_6678 ID=mRNA_6678|Name=jgi.p|Nanoce1779_2|597694|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp
CAGGCCAGCCCAACCGCACACACGGGGCTGTGAGTAGGAGAAGTACCGAT
TTTGGGTAAATGGGCGGCTACAACTCGTCTTCGTCCAGCAGCGGGGCGGG
AAGCCCGGAAGCTACTCCTCCTCGCCCCCCCCCCTCATCTAGCAGCAATC
TGCTCTGGGGCGACTCGGCCTCCTTTGAAAGGGTGGAACACGATCAGCAG
CAGCAGCAACAACCACTGTCACCGCTGCCGCGTGATCATACACAGATACC
CACGCAAAGCTTTGTGGGGTTGGGGCGGAGCTTGTCCTTGTCAGCGTCGT
CAGTCCTGAGTAGCATGACAATCAGCGCCAGCAGTCTCCTCAACACCAGC
GGGCCTGCCATGACACCTGAAGAAGAGGAGGAATTGACGGAATCAATGCT
AAAGCGTACGATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGG
ATGACTTTGAGCAGATCCGCCGCGAGGATGCATTCCCCCCCCCTCCTTCT
TTCAGTACCTGGATGGCCCCCAAGGTGGACTCCGCCCTCACATCCTTGCT
CACCCCCAAGGGTGTGATCTCCGCCGTAGTTGTTTATTTGGCCATGTATT
GGCGCTTAAAGGGGAGTTTCCACGAGGGGCAAGCTCGGAAATGGGAAATG
CGTTTTCGGGAGGAGGCCCGCCGGGGGTTGGAGCTCGATGAGGCGTTGAA
GGTGGCATTGGCGGAGGCACAACAGGCAGTTGGTGCCTTGTCTACTTGCC
AGCAGGAGCAGACTGCGTGTTGTGTGACCCGTGGACCGACGATCATGCCT
TGGATTCGAGCACAGGGGCAGAATGGGACTAAGTTTAAGAAGGAGCAGCT
GCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGTAGAGGCGCAAAAGACGG
GAGCCACACACCCTGGCCACGCTTATGAGTTTGCCGGCGCTACCATTGCC
CCCACGTCCTATTCTACTGATCCCAAAACAGCCGGCGCTACCATTGCCCC
CACGTCCTATTCTACTGATCCCAAAACCTGTCCTCCGTCCGTGGAGTGTC
CCTCCTTCCCTCCCTCTTCGGGAGCGGCCACGGCCATGCATCTTTCCAAT
TGTCTTTTGCAATTGCACGCGGGCCCGGGACCTTGTACAACTGATGCTCT
CAACCAGTTGACTGGCTGTGTGGGCCACGTGCTGACGTCTTCGGAGTTGG
TGCTGAAGGACGTGTTACGGCAGGTAGGTCTGCGGGGAGGGTCAGTGGAT
GGACTGTTGACTGCTTCCGTTGGCGTCATCCTTATCGCCGTTTGTTTCAT
CCATAGATCTCCTCCTCGCTCATCTTTTTTTCCTTTCCTTCTGTACTGTA
CTTTTGTCTTCCACGTAATCTACAGAGCATGAACATGGTGGGCAAGGCCC
AGGGGCTTTACGACACTGTCGAGGCGTCTTTTGATGGTGCTGTGGCTATG
GCCGCGGGGCATGTGGATGGGTGGTTGGACGTGCTGGCTCGGGGACTGGA
GGTGATTGATAAGGAGGATAATAAAGTGGAGGTGATAGAGGCGGTGGCGG
CCGCAGAGTTCGCAGAGGTGGAGTAGGGTCAGATGGGCGTGCATGTCTTA
CGTATGCGTCTGCGTAGAGAAAGGAGGTGGAGGAGGAGAAGGAGAAGGGA
AAAGAGGAAGAGGAAGAGAAAGAGAGAGAGGAAGAGGAAGAGGAGGAACC
GGCAGGAGTAAAGTCGGTTCCGAGACGGAGAATGTGAGAGCGTGCGTGGG
AAGGATTGTTTGTGAAAGAAAGAAGGGGATAACTATGGAAGGCACACTGA
CATAAATCCTGAAACACGGAAGGCCCTAGCCCGGCAGATCTGTCTGGGTA
GACGAGTGTGCACATACAACACATATAAATAAAGAGAGGATAGAGAGAGG
GAATCATAAGGATAGGACGTTGGGGGCACTCCTTCTTTCCCACTCTACCC
CTTACTATCGTACTTGCTTTTTCCTATGGCAACCCCTCTGGCGACGATCG
ACACATTTGATTGTCCCTAGCGACCAGCAACAAAAACATTACCACAACCA
CCACCACTGCCAACAACACGAACAACAACACGAACAACAACACGAACAAC
AAGAACGAGAACAACAACAAGAATAACACCACCAACAAGAACGACAAAAC
AAAACATAAATCGTGTCGATAGCCCGCCTTCCATGCACATTCCTCTACCA
AAATGAGAAGGGAGAAAACAAAACAAGAAAGAAAAATTTATTAATACACA
GA

protein sequence of jgi.p|Nanoce1779_2|597694

>mRNA_6678-protein ID=mRNA_6678-protein|Name=jgi.p|Nanoce1779_2|597694|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MGGYNSSSSSSGAGSPEATPPRPPPSSSSNLLWGDSASFERVEHDQQQQQ
QPLSPLPRDHTQIPTQSFVGLGRSLSLSASSVLSSMTISASSLLNTSGPA
MTPEEEEELTESMLKRTMEEEEEEEEEEEEDDFEQIRREDAFPPPPSFST
WMAPKVDSALTSLLTPKGVISAVVVYLAMYWRLKGSFHEGQARKWEMRFR
EEARRGLELDEALKVALAEAQQAVGALSTCQQEQTACCVTRGPTIMPWIR
AQGQNGTKFKKEQLQQQQQQQQEKVEAQKTGATHPGHAYEFAGATIAPTS
YSTDPKTAGATIAPTSYSTDPKTCPPSVECPSFPPSSGAATAMHLSNCLL
QLHAGPGPCTTDALNQLTGCVGHVLTSSELVLKDVLRQVGLRGGSVDGLL
TASVGVILIAVCFIHRSPPRSSFFPFLLYCTFVFHVIYRA*

mRNA from alignment at scaffold_18:420946..423197+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6678 ID=mRNA_6678|Name=jgi.p|Nanoce1779_2|597694|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp|location=Sequence derived from alignment at scaffold_18:420946..423197+ (Nannochloropsis oceanica)
CAGGCCAGCCCAACCGCACACACGGGGCTGTGAGTAGGAGAAGTACCGAT
TTTGGGTAAATGGGCGGCTACAACTCGTCTTCGTCCAGCAGCGGGGCGGG
AAGCCCGGAAGCTACTCCTCCTCGCCCCCCCCCCTCATCTAGCAGCAATC
TGCTCTGGGGCGACTCGGCCTCCTTTGAAAGGGTGGAACACGATCAGCAG
CAGCAGCAACAACCACTGTCACCGCTGCCGCGTGATCATACACAGATACC
CACGCAAAGCTTTGTGGGGTTGGGGCGGAGCTTGTCCTTGTCAGCGTCGT
CAGTCCTGAGTAGCATGACAATCAGCGCCAGCAGTCTCCTCAACACCAGC
GGGCCTGCCATGACACCTGAAGAAGAGGAGGAATTGACGGAATCAATGCT
AAAGCGTACGATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGG
ATGACTTTGAGCAGATCCGCCGCGAGGATGCATTCCCCCCCCCTCCTTCT
TTCAGTACCTGGATGGCCCCCAAGGTGGACTCCGCCCTCACATCCTTGCT
CACCCCCAAGGGTGTGATCTCCGCCGTAGTTGTTTATTTGGCCATGTATT
GGCGCTTAAAGGGGAGTTTCCACGAGGGGCAAGCTCGGAAATGGGAAATG
CGTTTTCGGGAGGAGGCCCGCCGGGGGTTGGAGCTCGATGAGGCGTTGAA
GGTGGCATTGGCGGAGGCACAACAGGCAGTTGGTGCCTTGTCTACTTGCC
AGCAGGAGCAGACTGCGTGTTGTGTGACCCGTGGACCGACGATCATGCCT
TGGATTCGAGCACAGGGGCAGAATGGGACTAAGTTTAAGAAGGAGCAGCT
GCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGTAGAGGCGCAAAAGACGG
GAGCCACACACCCTGGCCACGCTTATGAGTTTGCCGGCGCTACCATTGCC
CCCACGTCCTATTCTACTGATCCCAAAACAGCCGGCGCTACCATTGCCCC
CACGTCCTATTCTACTGATCCCAAAACCTGTCCTCCGTCCGTGGAGTGTC
CCTCCTTCCCTCCCTCTTCGGGAGCGGCCACGGCCATGCATCTTTCCAAT
TGTCTTTTGCAATTGCACGCGGGCCCGGGACCTTGTACAACTGATGCTCT
CAACCAGTTGACTGGCTGTGTGGGCCACGTGCTGACGTCTTCGGAGTTGG
TGCTGAAGGACGTGTTACGGCAGGTAGGTCTGCGGGGAGGGTCAGTGGAT
GGACTGTTGACTGCTTCCGTTGGCGTCATCCTTATCGCCGTTTGTTTCAT
CCATAGATCTCCTCCTCGCTCATCTTTTTTTCCTTTCCTTCTGTACTGTA
CTTTTGTCTTCCACGTAATCTACAGAGCATGAACATGGTGGGCAAGGCCC
AGGGGCTTTACGACACTGTCGAGGCGTCTTTTGATGGTGCTGTGGCTATG
GCCGCGGGGCATGTGGATGGGTGGTTGGACGTGCTGGCTCGGGGACTGGA
GGTGATTGATAAGGAGGATAATAAAGTGGAGGTGATAGAGGCGGTGGCGG
CCGCAGAGTTCGCAGAGGTGGAGTAGGGTCAGATGGGCGTGCATGTCTTA
CGTATGCGTCTGCGTAGAGAAAGGAGGTGGAGGAGGAGAAGGAGAAGGGA
AAAGAGGAAGAGGAAGAGAAAGAGAGAGAGGAAGAGGAAGAGGAGGAACC
GGCAGGAGTAAAGTCGGTTCCGAGACGGAGAATGTGAGAGCGTGCGTGGG
AAGGATTGTTTGTGAAAGAAAGAAGGGGATAACTATGGAAGGCACACTGA
CATAAATCCTGAAACACGGAAGGCCCTAGCCCGGCAGATCTGTCTGGGTA
GACGAGTGTGCACATACAACACATATAAATAAAGAGAGGATAGAGAGAGG
GAATCATAAGGATAGGACGTTGGGGGCACTCCTTCTTTCCCACTCTACCC
CTTACTATCGTACTTGCTTTTTCCTATGGCAACCCCTCTGGCGACGATCG
ACACATTTGATTGTCCCTAGCGACCAGCAACAAAAACATTACCACAACCA
CCACCACTGCCAACAACACGAACAACAACACGAACAACAACACGAACAAC
AAGAACGAGAACAACAACAAGAATAACACCACCAACAAGAACGACAAAAC
AAAACATAAATCGTGTCGATAGCCCGCCTTCCATGCACATTCCTCTACCA
AAATGAGAAGGGAGAAAACAAAACAAGAAAGAAAAATTTATTAATACACA
GA

Coding sequence (CDS) from alignment at scaffold_18:420946..423197+

>mRNA_6678 ID=mRNA_6678|Name=jgi.p|Nanoce1779_2|597694|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_18:420946..423197+ (Nannochloropsis oceanica)
ATGGGCGGCTACAACTCGTCTTCGTCCAGCAGCGGGGCGGGAAGCCCGGA
AGCTACTCCTCCTCGCCCCCCCCCCTCATCTAGCAGCAATCTGCTCTGGG
GCGACTCGGCCTCCTTTGAAAGGGTGGAACACGATCAGCAGCAGCAGCAA
CAACCACTGTCACCGCTGCCGCGTGATCATACACAGATACCCACGCAAAG
CTTTGTGGGGTTGGGGCGGAGCTTGTCCTTGTCAGCGTCGTCAGTCCTGA
GTAGCATGACAATCAGCGCCAGCAGTCTCCTCAACACCAGCGGGCCTGCC
ATGACACCTGAAGAAGAGGAGGAATTGACGGAATCAATGCTAAAGCGTAC
GATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGATGACTTTG
AGCAGATCCGCCGCGAGGATGCATTCCCCCCCCCTCCTTCTTTCAGTACC
TGGATGGCCCCCAAGGTGGACTCCGCCCTCACATCCTTGCTCACCCCCAA
GGGTGTGATCTCCGCCGTAGTTGTTTATTTGGCCATGTATTGGCGCTTAA
AGGGGAGTTTCCACGAGGGGCAAGCTCGGAAATGGGAAATGCGTTTTCGG
GAGGAGGCCCGCCGGGGGTTGGAGCTCGATGAGGCGTTGAAGGTGGCATT
GGCGGAGGCACAACAGGCAGTTGGTGCCTTGTCTACTTGCCAGCAGGAGC
AGACTGCGTGTTGTGTGACCCGTGGACCGACGATCATGCCTTGGATTCGA
GCACAGGGGCAGAATGGGACTAAGTTTAAGAAGGAGCAGCTGCAGCAGCA
GCAGCAGCAGCAGCAGGAGAAGGTAGAGGCGCAAAAGACGGGAGCCACAC
ACCCTGGCCACGCTTATGAGTTTGCCGGCGCTACCATTGCCCCCACGTCC
TATTCTACTGATCCCAAAACAGCCGGCGCTACCATTGCCCCCACGTCCTA
TTCTACTGATCCCAAAACCTGTCCTCCGTCCGTGGAGTGTCCCTCCTTCC
CTCCCTCTTCGGGAGCGGCCACGGCCATGCATCTTTCCAATTGTCTTTTG
CAATTGCACGCGGGCCCGGGACCTTGTACAACTGATGCTCTCAACCAGTT
GACTGGCTGTGTGGGCCACGTGCTGACGTCTTCGGAGTTGGTGCTGAAGG
ACGTGTTACGGCAGGTAGGTCTGCGGGGAGGGTCAGTGGATGGACTGTTG
ACTGCTTCCGTTGGCGTCATCCTTATCGCCGTTTGTTTCATCCATAGATC
TCCTCCTCGCTCATCTTTTTTTCCTTTCCTTCTGTACTGTACTTTTGTCT
TCCACGTAATCTACAGAGCATGA

Synonyms

Publications