jgi.p|Nanoce1779_2|623743, mRNA_6677 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623743
Unique NamemRNA_6677
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1296
Alignment locationscaffold_18:418345..419812 -

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Properties
Property NameValue
TranscriptId623829
TrackFilteredModels2
ProteinId623743
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:418345..419812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623743gene_6677Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623743mRNA_6677-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6677CDS_6677Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6677 ID=mRNA_6677|Name=jgi.p|Nanoce1779_2|623743|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
ATGAGCTCGACGACCTCAGGGGAATCTATTGCGTACAACAAATTGCTGGG
GCATCAAGACGGGATTATCGCTGACATCGTCCGCCGAGAGGGCTTGCCGC
CTGAGACCAAGGTGTACGTCCGCGCGGGGCCCCGCAAGGAATTGCATTTT
GAGCCGGAGAAGGTCCGAGCAGCAATTGTGACGTGCGGAGGATTGTGCCC
TGGGTTGAACAACGTGATTCGGGAGTTGGTGAATTCGCTCTTTCACTTGT
ATAGAGCGCAGGACGGCGTCTACGGTGTCCGTGGTGGCTTTTCTGGCTTC
CACGATGAGCACCGACAGCCAATCATGCTGACTCCTGCGCTGGTCGACCA
GATCCATCACGAGGGAGGGACAATTTTAGGGTCGTCACGGGGGGGATTCG
ACATAGATAAGATCATTGCATTTTTGGAGGAGAGGCGGATTTGCCAGCTT
TATATCATTGGGGGTGATGGGACGCATCGGGGGGCGAATAAGATAGGGGA
GGAGTGCTTGAAGCGGGGGTTGAATATTGCGGTGGTGGGGATCCCTAAGA
CGATTGACAACGACGTGGATTTGATTGACCGATCCTTCGGCTTTCAGACG
TCGGTAGAGGCAGCACAGGCGGCGATTCGCTGCGCCAAAACGGAGGCGAT
TTGCAATTTGCCGAATGGGATTGGGGTGGTTAAACTGATGGGCAGGTCTG
CGGGTTTTATTGCGGTGCATGCCACGTTGGCGAGTGGGGACGTGGACCTG
TGTCTGGTGCCCGAAGTCCCGATTGTGTTGGAGGGGGAGAGGGGTTGCTT
GCCGCACTTGGTGCAGCGCGTCCACGAGAAGGGCCATGCGGTGGTGGTGG
TGGCGGAGGGGGCGGGGGAGGAGCTACTGGGGGAAAGTGGGGAAAAGGAT
GCGAGTGGGAACAAGAAGCTGCCGGCCATTGGAGAGTTTCTGAAGTCGAA
AGTCTTGAGTTATTTCAAAGCCCAGGGGTTGCCATGTACGGTGAAGTACA
TCGACCCTTCCTATATGGTCAGGTCCGTGGCGGCGAATGCCGCTGATTCG
ATTTATTGCGCGCTCTTGGCCCAGAATGCGGTGCATGGGGCCATGGCGGG
CTTCACGCAGTTTACTGTGGGCCTGTGTAACAACCGCCTGGTGTATTTGC
CGATCCCGTTGGTGGTGGCGACGAGTCCGCGAATCATGGATCCGGTCGGA
CGGACGTGGGAGAGGGTGCTGAGCGTGACGCGACAGCCCAACACGGCGAT
CCGTCTGGCCAAAAACAAGATAACCTCGGCCAAAACGTTCCTATAA
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protein sequence of jgi.p|Nanoce1779_2|623743

>mRNA_6677-protein ID=mRNA_6677-protein|Name=jgi.p|Nanoce1779_2|623743|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSSTTSGESIAYNKLLGHQDGIIADIVRREGLPPETKVYVRAGPRKELHF
EPEKVRAAIVTCGGLCPGLNNVIRELVNSLFHLYRAQDGVYGVRGGFSGF
HDEHRQPIMLTPALVDQIHHEGGTILGSSRGGFDIDKIIAFLEERRICQL
YIIGGDGTHRGANKIGEECLKRGLNIAVVGIPKTIDNDVDLIDRSFGFQT
SVEAAQAAIRCAKTEAICNLPNGIGVVKLMGRSAGFIAVHATLASGDVDL
CLVPEVPIVLEGERGCLPHLVQRVHEKGHAVVVVAEGAGEELLGESGEKD
ASGNKKLPAIGEFLKSKVLSYFKAQGLPCTVKYIDPSYMVRSVAANAADS
IYCALLAQNAVHGAMAGFTQFTVGLCNNRLVYLPIPLVVATSPRIMDPVG
RTWERVLSVTRQPNTAIRLAKNKITSAKTFL*
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mRNA from alignment at scaffold_18:418345..419812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6677 ID=mRNA_6677|Name=jgi.p|Nanoce1779_2|623743|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at scaffold_18:418345..419812- (Nannochloropsis oceanica)
ATGAGCTCGACGACCTCAGGGGAATCTATTGCGTACAACAAATTGCTGGG
GCATCAAGACGGGATTATCGCTGACATCGTCCGCCGAGAGGGCTTGCCGC
CTGAGACCAAGGTGTACGTCCGCGCGGGGCCCCGCAAGGAATTGCATTTT
GAGCCGGAGAAGGTCCGAGCAGCAATTGTGACGTGCGGAGGATTGTGCCC
TGGGTTGAACAACGTGATTCGGGAGTTGGTGAATTCGCTCTTTCACTTGT
ATAGAGCGCAGGTAGGATTTTGATGGGGAGGGACGGGGGGATGGAAAGGT
GGCTGTCCATGCCTACTTATTTATGTGGCAGAGGGGAAGGCTTTTTACAT
ATATCCCCTTATCCGTGGGTGGAGGAAGCCCCACCTTCTTCATTAATATG
TCACCTTCCCTCCCTTCCCCTTTCCTCCCCCAGGACGGCGTCTACGGTGT
CCGTGGTGGCTTTTCTGGCTTCCACGATGAGCACCGACAGCCAATCATGC
TGACTCCTGCGCTGGTCGACCAGATCCATCACGAGGGAGGGACAATTTTA
GGGTCGTCACGGGGGGGATTCGACATAGATAAGATCATTGCATTTTTGGA
GGAGAGGCGGATTTGCCAGCTTTATATCATTGGGGGTGATGGGACGCATC
GGGGGGCGAATAAGATAGGGGAGGAGTGCTTGAAGCGGGGGTTGAATATT
GCGGTGGTGGGGATCCCTAAGACGATTGACAACGACGTGGATTTGATTGA
CCGATCCTTCGGCTTTCAGACGTCGGTAGAGGCAGCACAGGCGGCGATTC
GCTGCGCCAAAACGGAGGCGATTTGCAATTTGCCGAATGGGATTGGGGTG
GTTAAACTGATGGGCAGGTCTGCGGGTTTTATTGCGGTGCATGCCACGTT
GGCGAGTGGGGACGTGGACCTGTGTCTGGTGCCCGAAGTCCCGATTGTGT
TGGAGGGGGAGAGGGGTTGCTTGCCGCACTTGGTGCAGCGCGTCCACGAG
AAGGGCCATGCGGTGGTGGTGGTGGCGGAGGGGGCGGGGGAGGAGCTACT
GGGGGAAAGTGGGGAAAAGGATGCGAGTGGGAACAAGAAGCTGCCGGCCA
TTGGAGAGTTTCTGAAGTCGAAAGTCTTGAGTTATTTCAAAGCCCAGGGG
TTGCCATGTACGGTGAAGTACATCGACCCTTCCTATATGGTCAGGTCCGT
GGCGGCGAATGCCGCTGATTCGATTTATTGCGCGCTCTTGGCCCAGAATG
CGGTGCATGGGGCCATGGCGGGCTTCACGCAGTTTACTGTGGGCCTGTGT
AACAACCGCCTGGTGTATTTGCCGATCCCGTTGGTGGTGGCGACGAGTCC
GCGAATCATGGATCCGGTCGGACGGACGTGGGAGAGGGTGCTGAGCGTGA
CGCGACAGCCCAACACGGCGATCCGTCTGGCCAAAAACAAGATAACCTCG
GCCAAAACGTTCCTATAA
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Coding sequence (CDS) from alignment at scaffold_18:418345..419812-

>mRNA_6677 ID=mRNA_6677|Name=jgi.p|Nanoce1779_2|623743|organism=Nannochloropsis oceanica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_18:418345..419812- (Nannochloropsis oceanica)
GACGGCGTCTACGGTGTCCGTGGTGGCTTTTCTGGCTTCCACGATGAGCA
CCGACAGCCAATCATGCTGACTCCTGCGCTGGTCGACCAGATCCATCACG
AGGGAGGGACAATTTTAGGGTCGTCACGGGGGGGATTCGACATAGATAAG
ATCATTGCATTTTTGGAGGAGAGGCGGATTTGCCAGCTTTATATCATTGG
GGGTGATGGGACGCATCGGGGGGCGAATAAGATAGGGGAGGAGTGCTTGA
AGCGGGGGTTGAATATTGCGGTGGTGGGGATCCCTAAGACGATTGACAAC
GACGTGGATTTGATTGACCGATCCTTCGGCTTTCAGACGTCGGTAGAGGC
AGCACAGGCGGCGATTCGCTGCGCCAAAACGGAGGCGATTTGCAATTTGC
CGAATGGGATTGGGGTGGTTAAACTGATGGGCAGGTCTGCGGGTTTTATT
GCGGTGCATGCCACGTTGGCGAGTGGGGACGTGGACCTGTGTCTGGTGCC
CGAAGTCCCGATTGTGTTGGAGGGGGAGAGGGGTTGCTTGCCGCACTTGG
TGCAGCGCGTCCACGAGAAGGGCCATGCGGTGGTGGTGGTGGCGGAGGGG
GCGGGGGAGGAGCTACTGGGGGAAAGTGGGGAAAAGGATGCGAGTGGGAA
CAAGAAGCTGCCGGCCATTGGAGAGTTTCTGAAGTCGAAAGTCTTGAGTT
ATTTCAAAGCCCAGGGGTTGCCATGTACGGTGAAGTACATCGACCCTTCC
TATATGGTCAGGTCCGTGGCGGCGAATGCCGCTGATTCGATTTATTGCGC
GCTCTTGGCCCAGAATGCGGTGCATGGGGCCATGGCGGGCTTCACGCAGT
TTACTGTGGGCCTGTGTAACAACCGCCTGGTGTATTTGCCGATCCCGTTG
GTGGTGGCGACGAGTCCGCGAATCATGGATCCGGTCGGACGGACGTGGGA
GAGGGTGCTGAGCGTGACGCGACAGCCCAACACGGCGATCCGTCTGGCCA
AAAACAAGATAACCTCGGCCAAAACGTTCCTATAAATGAGCTCGACGACC
TCAGGGGAATCTATTGCGTACAACAAATTGCTGGGGCATCAAGACGGGAT
TATCGCTGACATCGTCCGCCGAGAGGGCTTGCCGCCTGAGACCAAGGTGT
ACGTCCGCGCGGGGCCCCGCAAGGAATTGCATTTTGAGCCGGAGAAGGTC
CGAGCAGCAATTGTGACGTGCGGAGGATTGTGCCCTGGGTTGAACAACGT
GATTCGGGAGTTGGTGAATTCGCTCTTTCACTTGTATAGAGCGCAGGACG
GCGTCTACGGTGTCCGTGGTGGCTTTTCTGGCTTCCACGATGAGCACCGA
CAGCCAATCATGCTGACTCCTGCGCTGGTCGACCAGATCCATCACGAGGG
AGGGACAATTTTAGGGTCGTCACGGGGGGGATTCGACATAGATAAGATCA
TTGCATTTTTGGAGGAGAGGCGGATTTGCCAGCTTTATATCATTGGGGGT
GATGGGACGCATCGGGGGGCGAATAAGATAGGGGAGGAGTGCTTGAAGCG
GGGGTTGAATATTGCGGTGGTGGGGATCCCTAAGACGATTGACAACGACG
TGGATTTGATTGACCGATCCTTCGGCTTTCAGACGTCGGTAGAGGCAGCA
CAGGCGGCGATTCGCTGCGCCAAAACGGAGGCGATTTGCAATTTGCCGAA
TGGGATTGGGGTGGTTAAACTGATGGGCAGGTCTGCGGGTTTTATTGCGG
TGCATGCCACGTTGGCGAGTGGGGACGTGGACCTGTGTCTGGTGCCCGAA
GTCCCGATTGTGTTGGAGGGGGAGAGGGGTTGCTTGCCGCACTTGGTGCA
GCGCGTCCACGAGAAGGGCCATGCGGTGGTGGTGGTGGCGGAGGGGGCGG
GGGAGGAGCTACTGGGGGAAAGTGGGGAAAAGGATGCGAGTGGGAACAAG
AAGCTGCCGGCCATTGGAGAGTTTCTGAAGTCGAAAGTCTTGAGTTATTT
CAAAGCCCAGGGGTTGCCATGTACGGTGAAGTACATCGACCCTTCCTATA
TGGTCAGGTCCGTGGCGGCGAATGCCGCTGATTCGATTTATTGCGCGCTC
TTGGCCCAGAATGCGGTGCATGGGGCCATGGCGGGCTTCACGCAGTTTAC
TGTGGGCCTGTGTAACAACCGCCTGGTGTATTTGCCGATCCCGTTGGTGG
TGGCGACGAGTCCGCGAATCATGGATCCGGTCGGACGGACGTGGGAGAGG
GTGCTGAGCGTGACGCGACAGCCCAACACGGCGATCCGTCTGGCCAAAAA
CAAGATAACCTCGGCCAAAACGTTCCTATAAATGAGCTCGACGACCTCAG
GGGAATCTATTGCGTACAACAAATTGCTGGGGCATCAAGACGGGATTATC
GCTGACATCGTCCGCCGAGAGGGCTTGCCGCCTGAGACCAAGGTGTACGT
CCGCGCGGGGCCCCGCAAGGAATTGCATTTTGAGCCGGAGAAGGTCCGAG
CAGCAATTGTGACGTGCGGAGGATTGTGCCCTGGGTTGAACAACGTGATT
CGGGAGTTGGTGAATTCGCTCTTTCACTTGTATAGAGCGCAG
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Synonyms
Publications