jgi.p|Nanoce1779_2|597663, mRNA_6672 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597663
Unique Name	mRNA_6672
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2063
Alignment location	scaffold_18:404272..406334 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597749
Track	FilteredModels2
ProteinId	597663

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:404272..406334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597663	gene_6672	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597663	mRNA_6672-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6672	CDS_6672	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:404272..406334+
coding sequence from alignment at scaffold_18:404272..406334+

mRNA sequence

>mRNA_6672 ID=mRNA_6672|Name=jgi.p|Nanoce1779_2|597663|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp
GCCCACCACCACCCCGGGCCCCATCCCCCCCACACACAATGCCAGCGTCG
ACAACGCTCCCAATAACCTTACTTGTTTTCCTGCCCGACTCAATCTCATC
TCCCCCTCCTCCATCCCCCCCTCCTCATCCTCCTCGTCCTGTCCCAATAC
CTCCGTCTGTGCCTGGGCATCTCGAAAGGTAGTGACTGACATCTGGCTCA
GTCCAACAGACAGTCCCAAAAACCCCAATTTCCAAATCCACGAATGTCCC
GAGGTAGAGGTAGGGGGGGAGGAACGGAGGAGCAGCCCTGCCTCTGTCAA
GCTCAAAGGAAGACCGACGGTGAGGAGGGCGGAGATAACGCCGGTGGAAA
TGAGGCTGGAAGAAGATCGGGTCCGGGAGGAGGGTGTTGAGTCTCCGTTC
CCCTCTTCCTCCTCCTCCTCATATTCGTCTTCGTCTGTGTACGAGGGGTT
GTGCGTGTGCGGGGTGCTGTGGAGGAGGGGGAGGACTAGAAGGGCAACTG
CAATGACGGAGGAAGGACGAGTCTGTGCCAAGGTTAGCAAGCCAAATGCA
GCGAAAACGAGGGAGAACCACGTCAAGGCCAGTAGAAAATAGGAGCCTCG
ATGATTGGTGAGTGGGGAGAGGGGAGAGGAGGCAGAGAGGGAGGAGGGGT
AGATGAGCTGCTTTCCCCCGTGAAGGAAGATGAGAGCAGGCCCAACAGTC
AGGCTGAGAAGAACCTGTGTAGGGTTGAGAAGGTAATTGTATTGGCTCTG
AAGACCGGCATTTTGGATCTCTTGTACGGCTAAGCAAGCCCACCCAAAGC
CGGAGATAGACGCGCCCGCCATCGCCCAGCCTGAGGTACGCGAGGGGGTG
AGGGGGAGGGAAGACTGGCGAAATCGCTGCTGCTGCTGCTGTTGTTGTTG
TTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTTGTTTTTGC
GGAGATTGTGGTGAGAGGAAGAGGAGGAGAGGAGGCGGCGAGAAGAGGCG
GGGGATGACGGGAAGCCGGCGTTCTTTCTAGCCTTTTTGCTCTTCTTCTT
AGTGCTCGTCGAACTTGTCAGCTGTGCGAGAGACTTCCTCTCGAAAGCAA
GTCTTCCCCTCTTCCCGTCCTTCCTCGTCGTCCTCCCCTTCTTTACGCTG
CTGCTGCTGCTGATGATGTCGCCAATGTTGCTGCGTTTTTTTGCTTTTTT
GCTTTTTGTCGACAAAATCTCCACCTCGTTTTCGCCCTCCTCTAACACAG
ACGATGCCTCCGCAGCCCCGACCGAGCGACGACGCTGTCGAGCGAGTGCC
TTCATTGTGATAACCCCGCTTCGTACATCTTTCTCTCTCGCCTTCTCCTC
CACACCACTTGTCCCGCTGTTTTCCTTTCCCCCCGGCGACAATACTTCCT
CATCCACCGCCGCCTTCTGTTTTTTCCTCTTCTTCATCTCGTTTCTCCCA
CGCAGAGGGGCACCAGACGACGACGGAAGAGGCCCACCCATCTTCTGTGG
GATTGGAAACCCCAAAGACGCACCCAAGTTATCAAACATGAGCTCGAGCT
CTTCGTCAAATTCATCATCGACTCGCTGGATATCTTGTAGTAATAAAGGC
AAGTACTCATCTAGCAGGGACACTGGCGGCAGCTGCAAGCGTTTTTCCTC
GTAAGCATCTTCGTCTTCCCGCCCTACATCCCTCCTTGCTTCCTGCTGTT
GTTGGTTGTACTGCTGATTCTGGTATTGCTGGTGCTCCTGCTGCTCATTG
GCGCCATCACGAGGGGAAGAAGACGGCACTCCTGTGTACAGGTCCGCTTG
CCCTGGCTCTTGTGCAGCTGCCGTGGGCGGCACAGGGAGAGGACGACGGG
CACCCCGGCGGGCACCGGGAGGAAAGGACGACACGGATGCTGCCGCGGCC
ACCGCTTCAACTGTAAGGAGGAGGCTGGAGGATGAGGCGGCGGCGGCGGC
GGCTAGGAGCGGCCATGCGACGCAGCGTTGTCGACGAAGGTGCTGATGCT
GATGATGTTGGTAGTGCCGCATGGGGCTTGATGGAGAAGGCATCGTTTGG
CTCGTGCCTGTTG

protein sequence of jgi.p|Nanoce1779_2|597663

>mRNA_6672-protein ID=mRNA_6672-protein|Name=jgi.p|Nanoce1779_2|597663|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MMSPMLLRFFAFLLFVDKISTSFSPSSNTDDASAAPTERRRCRASAFIVI
TPLRTSFSLAFSSTPLVPLFSFPPGDNTSSSTAAFCFFLFFISFLPRRGA
PDDDGRGPPIFCGIGNPKDAPKLSNMSSSSSSNSSSTRWISCSNKGKYSS
SRDTGGSCKRFSS*

mRNA from alignment at scaffold_18:404272..406334+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6672 ID=mRNA_6672|Name=jgi.p|Nanoce1779_2|597663|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at scaffold_18:404272..406334+ (Nannochloropsis oceanica)
GCCCACCACCACCCCGGGCCCCATCCCCCCCACACACAATGCCAGCGTCG
ACAACGCTCCCAATAACCTTACTTGTTTTCCTGCCCGACTCAATCTCATC
TCCCCCTCCTCCATCCCCCCCTCCTCATCCTCCTCGTCCTGTCCCAATAC
CTCCGTCTGTGCCTGGGCATCTCGAAAGGTAGTGACTGACATCTGGCTCA
GTCCAACAGACAGTCCCAAAAACCCCAATTTCCAAATCCACGAATGTCCC
GAGGTAGAGGTAGGGGGGGAGGAACGGAGGAGCAGCCCTGCCTCTGTCAA
GCTCAAAGGAAGACCGACGGTGAGGAGGGCGGAGATAACGCCGGTGGAAA
TGAGGCTGGAAGAAGATCGGGTCCGGGAGGAGGGTGTTGAGTCTCCGTTC
CCCTCTTCCTCCTCCTCCTCATATTCGTCTTCGTCTGTGTACGAGGGGTT
GTGCGTGTGCGGGGTGCTGTGGAGGAGGGGGAGGACTAGAAGGGCAACTG
CAATGACGGAGGAAGGACGAGTCTGTGCCAAGGTTAGCAAGCCAAATGCA
GCGAAAACGAGGGAGAACCACGTCAAGGCCAGTAGAAAATAGGAGCCTCG
ATGATTGGTGAGTGGGGAGAGGGGAGAGGAGGCAGAGAGGGAGGAGGGGT
AGATGAGCTGCTTTCCCCCGTGAAGGAAGATGAGAGCAGGCCCAACAGTC
AGGCTGAGAAGAACCTGTGTAGGGTTGAGAAGGTAATTGTATTGGCTCTG
AAGACCGGCATTTTGGATCTCTTGTACGGCTAAGCAAGCCCACCCAAAGC
CGGAGATAGACGCGCCCGCCATCGCCCAGCCTGAGGTACGCGAGGGGGTG
AGGGGGAGGGAAGACTGGCGAAATCGCTGCTGCTGCTGCTGTTGTTGTTG
TTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTTGTTTTTGC
GGAGATTGTGGTGAGAGGAAGAGGAGGAGAGGAGGCGGCGAGAAGAGGCG
GGGGATGACGGGAAGCCGGCGTTCTTTCTAGCCTTTTTGCTCTTCTTCTT
AGTGCTCGTCGAACTTGTCAGCTGTGCGAGAGACTTCCTCTCGAAAGCAA
GTCTTCCCCTCTTCCCGTCCTTCCTCGTCGTCCTCCCCTTCTTTACGCTG
CTGCTGCTGCTGATGATGTCGCCAATGTTGCTGCGTTTTTTTGCTTTTTT
GCTTTTTGTCGACAAAATCTCCACCTCGTTTTCGCCCTCCTCTAACACAG
ACGATGCCTCCGCAGCCCCGACCGAGCGACGACGCTGTCGAGCGAGTGCC
TTCATTGTGATAACCCCGCTTCGTACATCTTTCTCTCTCGCCTTCTCCTC
CACACCACTTGTCCCGCTGTTTTCCTTTCCCCCCGGCGACAATACTTCCT
CATCCACCGCCGCCTTCTGTTTTTTCCTCTTCTTCATCTCGTTTCTCCCA
CGCAGAGGGGCACCAGACGACGACGGAAGAGGCCCACCCATCTTCTGTGG
GATTGGAAACCCCAAAGACGCACCCAAGTTATCAAACATGAGCTCGAGCT
CTTCGTCAAATTCATCATCGACTCGCTGGATATCTTGTAGTAATAAAGGC
AAGTACTCATCTAGCAGGGACACTGGCGGCAGCTGCAAGCGTTTTTCCTC
GTAAGCATCTTCGTCTTCCCGCCCTACATCCCTCCTTGCTTCCTGCTGTT
GTTGGTTGTACTGCTGATTCTGGTATTGCTGGTGCTCCTGCTGCTCATTG
GCGCCATCACGAGGGGAAGAAGACGGCACTCCTGTGTACAGGTCCGCTTG
CCCTGGCTCTTGTGCAGCTGCCGTGGGCGGCACAGGGAGAGGACGACGGG
CACCCCGGCGGGCACCGGGAGGAAAGGACGACACGGATGCTGCCGCGGCC
ACCGCTTCAACTGTAAGGAGGAGGCTGGAGGATGAGGCGGCGGCGGCGGC
GGCTAGGAGCGGCCATGCGACGCAGCGTTGTCGACGAAGGTGCTGATGCT
GATGATGTTGGTAGTGCCGCATGGGGCTTGATGGAGAAGGCATCGTTTGG
CTCGTGCCTGTTG

Coding sequence (CDS) from alignment at scaffold_18:404272..406334+

>mRNA_6672 ID=mRNA_6672|Name=jgi.p|Nanoce1779_2|597663|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_18:404272..406334+ (Nannochloropsis oceanica)
ATGATGTCGCCAATGTTGCTGCGTTTTTTTGCTTTTTTGCTTTTTGTCGA
CAAAATCTCCACCTCGTTTTCGCCCTCCTCTAACACAGACGATGCCTCCG
CAGCCCCGACCGAGCGACGACGCTGTCGAGCGAGTGCCTTCATTGTGATA
ACCCCGCTTCGTACATCTTTCTCTCTCGCCTTCTCCTCCACACCACTTGT
CCCGCTGTTTTCCTTTCCCCCCGGCGACAATACTTCCTCATCCACCGCCG
CCTTCTGTTTTTTCCTCTTCTTCATCTCGTTTCTCCCACGCAGAGGGGCA
CCAGACGACGACGGAAGAGGCCCACCCATCTTCTGTGGGATTGGAAACCC
CAAAGACGCACCCAAGTTATCAAACATGAGCTCGAGCTCTTCGTCAAATT
CATCATCGACTCGCTGGATATCTTGTAGTAATAAAGGCAAGTACTCATCT
AGCAGGGACACTGGCGGCAGCTGCAAGCGTTTTTCCTCGTAA

Synonyms

Publications