jgi.p|Nanoce1779_2|597662, mRNA_6671 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597662
Unique Name	mRNA_6671
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2249
Alignment location	scaffold_18:402023..404271 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597748
Track	FilteredModels2
ProteinId	597662

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:402023..404271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597662	gene_6671	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597662	mRNA_6671-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6671	CDS_6671	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:402023..404271+
coding sequence from alignment at scaffold_18:402023..404271+

mRNA sequence

>mRNA_6671 ID=mRNA_6671|Name=jgi.p|Nanoce1779_2|597662|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp
GCCTCGCGGGGGAGGAGACGACCAGAGCAACCACCCACACCAGCTGAGGC
AACAGCAGCACCAGCAGTGCCAGCACTACCAGCACCAGCGGACTAGCACC
ATGACAGCAGTCTTTAACACACTAATTCCTAAAGCCCTTGTTCGTGTCCT
GGTCTTGAGCCCTCCCTTACTAGTCCACTTCTTGTTTTTCCGCATGTTCT
ACCAGGCCGGCCTTCGGTGCCTGGCCTACCTCGGGAGCACATATATCATA
CACAACCTGGAACTAGACAATAATGTCGCTACAAAAGCTGTCATAATAGC
TTTTGGTGCTGCCTTAATAGGAATGGGAATGGCCTTAGCCTTTCTCTCTG
CGAACGAAAAAAGGGTTCAAAAACAACGAGAAGCCTCTCGCTTCCGCCGC
GCCTCCTCCGTCTCAGCTGCCACGGCTGTTGGCGCGGTCATCGCCGCTGC
GCGCGTGGAACAAAATACTCATTTGTCTTCTTCTGCGGAGTCTGGCTCAT
CCTCTACCGCGCTTGATGTCCCGGAAAAGGCGCCATTGCTTATCGCCTTG
GCACTCATGACGGTGCTCCTTGCTGTTTCTCCGACAATTGTGGCCAAAAG
CAGCAACCTGTCCATTGACGCCTCACGGGACTTCGGACCACTCTACATAT
TGGCATCCGTCTGTGGTCTCTGCTTTGGCTTTGTCTCCACCTATGAAAAA
GGGATTTTAGCAAGCATGCTTTGGCCGCGAGGCGCGCAGCAGCAGCAATT
CTACACTCCATCCCACGACCCATCACTCGCCGCGGCGGGTATTGGAGTGG
GGCAGGTTTGTGGGCTTTTTATAGCGTTCAATGCATTGTTGGAGTGGGCG
CCCACTTTTTTATTTGCAGCGTTTACAAGATATTCAGCCACTTCAGCTTT
GTGGGCGCTCGCACTCTTTTTTGGCTTAAGTGTTTTCGTTTTTGTAGTAT
TTGTCATTCTGGAAGGAGCGCGGGAGCGGCGAGAAAGTGAAAGGGGGGGA
GGAGGAGAGGGAGAAGGAAGAAAGGGCTCAACAGATGATTCCTTAAATGA
CATAATACCCCAGCTGAGTCGGCGCAAATCCTCCTCGCTCTTGCAGCCTT
TGCCCTCTCACCTTTCTACCATTGCGGAGTCTTCCTATGAAGGGACAAGG
CGTGTAGGGGAAAGGTCTTCATCCACCGTCTCTTGTTCTTATCTGTCTGA
TCTTTCAACCGCAGCCTCGTAAGCTTCCTTAGGCAGGACAATGAAGGCAT
AGAGCGGGAAAGGGCGCGGAGGGGAGATAGAAAGAGGATGGGGAGGCGGA
CAGACTGTCCAGAGGGGGGAGGCGGTTGTCGCTGTCGAGCATACGATGAT
AAGTGAGCGAGTGTAGAGAGTGGAAGGGAGGACAGACCAACAGTATATGT
TGAGCGGGTGGAAATAATTGTAAAGTAAGGAAGGAGGGCGGAGGGCAAAT
GAGATACATTGATCGAATGCCGATTTCCGATCGAGGTGGCGATACGAAGG
CGGGTCTAGCTCTAAGGCTGAAAAATTGAATAAAAATGATTGACCCTATG
AACAGAGATGGAAAGGTAGACCAACCACGCTTGCAATGTCATATCTTGCT
ATAGCACAATCGAGTTCAGTATCTCTTCTGTTTGTCGTCCTTCCATCTTC
ATTCTTTTCCCTTTCCATTTCAAATCGGGACCTTAATCGACAATAAATCA
CATTACACATAAGACTGGACTGCGCCTTTTTCTCTCTGTCTTTCTCCTCC
TAGTTACTGTTTTATCTTATCTTTTGAGTCATTATGAATAGTGTCAAGAA
GGAGGCAACGGCAAGCCCAAGCGCTCCTCGTCTTCCGCCTCTGATGATCC
GCGGCTGCTGCCGCTGCTGCTGCTGCTGACCGCTGTGGAGGAGGACGAGA
CAGGAGAGGAGGCGAATAAAGGGGATGATAATCGCTCGTACTCATTCTTG
ACCTTGGTGGCCTCTTGCCGTAGCTGCTGTTTCTTCAAAGCCGCCACCAA
ATTGGCAACGCCTTTCTCCTCCACCTCCATATACATTTTCTCATCCTCCT
CCGTCTTCCCCCCAAGCCTCTCTGTCCGTATCCCTACCTCCTCCTCCCCT
TCCAAAGCCGGCAAGCTCATCGCTTCCCCCACCAATGAAGCCATCAATGC
CCATACCCCTCCCTGCATCTCCGCCATCGTCCTCCCCACCCTCCCCCACA
CCCTCTCTCCCGTCGATAATTTTGATAACACCAGCAAATGGACCAAACT

protein sequence of jgi.p|Nanoce1779_2|597662

>mRNA_6671-protein ID=mRNA_6671-protein|Name=jgi.p|Nanoce1779_2|597662|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTAVFNTLIPKALVRVLVLSPPLLVHFLFFRMFYQAGLRCLAYLGSTYII
HNLELDNNVATKAVIIAFGAALIGMGMALAFLSANEKRVQKQREASRFRR
ASSVSAATAVGAVIAAARVEQNTHLSSSAESGSSSTALDVPEKAPLLIAL
ALMTVLLAVSPTIVAKSSNLSIDASRDFGPLYILASVCGLCFGFVSTYEK
GILASMLWPRGAQQQQFYTPSHDPSLAAAGIGVGQVCGLFIAFNALLEWA
PTFLFAAFTRYSATSALWALALFFGLSVFVFVVFVILEGARERRESERGG
GGEGEGRKGSTDDSLNDIIPQLSRRKSSSLLQPLPSHLSTIAESSYEGTR
RVGERSSSTVSCSYLSDLSTAAS*

mRNA from alignment at scaffold_18:402023..404271+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6671 ID=mRNA_6671|Name=jgi.p|Nanoce1779_2|597662|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp|location=Sequence derived from alignment at scaffold_18:402023..404271+ (Nannochloropsis oceanica)
GCCTCGCGGGGGAGGAGACGACCAGAGCAACCACCCACACCAGCTGAGGC
AACAGCAGCACCAGCAGTGCCAGCACTACCAGCACCAGCGGACTAGCACC
ATGACAGCAGTCTTTAACACACTAATTCCTAAAGCCCTTGTTCGTGTCCT
GGTCTTGAGCCCTCCCTTACTAGTCCACTTCTTGTTTTTCCGCATGTTCT
ACCAGGCCGGCCTTCGGTGCCTGGCCTACCTCGGGAGCACATATATCATA
CACAACCTGGAACTAGACAATAATGTCGCTACAAAAGCTGTCATAATAGC
TTTTGGTGCTGCCTTAATAGGAATGGGAATGGCCTTAGCCTTTCTCTCTG
CGAACGAAAAAAGGGTTCAAAAACAACGAGAAGCCTCTCGCTTCCGCCGC
GCCTCCTCCGTCTCAGCTGCCACGGCTGTTGGCGCGGTCATCGCCGCTGC
GCGCGTGGAACAAAATACTCATTTGTCTTCTTCTGCGGAGTCTGGCTCAT
CCTCTACCGCGCTTGATGTCCCGGAAAAGGCGCCATTGCTTATCGCCTTG
GCACTCATGACGGTGCTCCTTGCTGTTTCTCCGACAATTGTGGCCAAAAG
CAGCAACCTGTCCATTGACGCCTCACGGGACTTCGGACCACTCTACATAT
TGGCATCCGTCTGTGGTCTCTGCTTTGGCTTTGTCTCCACCTATGAAAAA
GGGATTTTAGCAAGCATGCTTTGGCCGCGAGGCGCGCAGCAGCAGCAATT
CTACACTCCATCCCACGACCCATCACTCGCCGCGGCGGGTATTGGAGTGG
GGCAGGTTTGTGGGCTTTTTATAGCGTTCAATGCATTGTTGGAGTGGGCG
CCCACTTTTTTATTTGCAGCGTTTACAAGATATTCAGCCACTTCAGCTTT
GTGGGCGCTCGCACTCTTTTTTGGCTTAAGTGTTTTCGTTTTTGTAGTAT
TTGTCATTCTGGAAGGAGCGCGGGAGCGGCGAGAAAGTGAAAGGGGGGGA
GGAGGAGAGGGAGAAGGAAGAAAGGGCTCAACAGATGATTCCTTAAATGA
CATAATACCCCAGCTGAGTCGGCGCAAATCCTCCTCGCTCTTGCAGCCTT
TGCCCTCTCACCTTTCTACCATTGCGGAGTCTTCCTATGAAGGGACAAGG
CGTGTAGGGGAAAGGTCTTCATCCACCGTCTCTTGTTCTTATCTGTCTGA
TCTTTCAACCGCAGCCTCGTAAGCTTCCTTAGGCAGGACAATGAAGGCAT
AGAGCGGGAAAGGGCGCGGAGGGGAGATAGAAAGAGGATGGGGAGGCGGA
CAGACTGTCCAGAGGGGGGAGGCGGTTGTCGCTGTCGAGCATACGATGAT
AAGTGAGCGAGTGTAGAGAGTGGAAGGGAGGACAGACCAACAGTATATGT
TGAGCGGGTGGAAATAATTGTAAAGTAAGGAAGGAGGGCGGAGGGCAAAT
GAGATACATTGATCGAATGCCGATTTCCGATCGAGGTGGCGATACGAAGG
CGGGTCTAGCTCTAAGGCTGAAAAATTGAATAAAAATGATTGACCCTATG
AACAGAGATGGAAAGGTAGACCAACCACGCTTGCAATGTCATATCTTGCT
ATAGCACAATCGAGTTCAGTATCTCTTCTGTTTGTCGTCCTTCCATCTTC
ATTCTTTTCCCTTTCCATTTCAAATCGGGACCTTAATCGACAATAAATCA
CATTACACATAAGACTGGACTGCGCCTTTTTCTCTCTGTCTTTCTCCTCC
TAGTTACTGTTTTATCTTATCTTTTGAGTCATTATGAATAGTGTCAAGAA
GGAGGCAACGGCAAGCCCAAGCGCTCCTCGTCTTCCGCCTCTGATGATCC
GCGGCTGCTGCCGCTGCTGCTGCTGCTGACCGCTGTGGAGGAGGACGAGA
CAGGAGAGGAGGCGAATAAAGGGGATGATAATCGCTCGTACTCATTCTTG
ACCTTGGTGGCCTCTTGCCGTAGCTGCTGTTTCTTCAAAGCCGCCACCAA
ATTGGCAACGCCTTTCTCCTCCACCTCCATATACATTTTCTCATCCTCCT
CCGTCTTCCCCCCAAGCCTCTCTGTCCGTATCCCTACCTCCTCCTCCCCT
TCCAAAGCCGGCAAGCTCATCGCTTCCCCCACCAATGAAGCCATCAATGC
CCATACCCCTCCCTGCATCTCCGCCATCGTCCTCCCCACCCTCCCCCACA
CCCTCTCTCCCGTCGATAATTTTGATAACACCAGCAAATGGACCAAACT

Coding sequence (CDS) from alignment at scaffold_18:402023..404271+

>mRNA_6671 ID=mRNA_6671|Name=jgi.p|Nanoce1779_2|597662|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_18:402023..404271+ (Nannochloropsis oceanica)
ATGACAGCAGTCTTTAACACACTAATTCCTAAAGCCCTTGTTCGTGTCCT
GGTCTTGAGCCCTCCCTTACTAGTCCACTTCTTGTTTTTCCGCATGTTCT
ACCAGGCCGGCCTTCGGTGCCTGGCCTACCTCGGGAGCACATATATCATA
CACAACCTGGAACTAGACAATAATGTCGCTACAAAAGCTGTCATAATAGC
TTTTGGTGCTGCCTTAATAGGAATGGGAATGGCCTTAGCCTTTCTCTCTG
CGAACGAAAAAAGGGTTCAAAAACAACGAGAAGCCTCTCGCTTCCGCCGC
GCCTCCTCCGTCTCAGCTGCCACGGCTGTTGGCGCGGTCATCGCCGCTGC
GCGCGTGGAACAAAATACTCATTTGTCTTCTTCTGCGGAGTCTGGCTCAT
CCTCTACCGCGCTTGATGTCCCGGAAAAGGCGCCATTGCTTATCGCCTTG
GCACTCATGACGGTGCTCCTTGCTGTTTCTCCGACAATTGTGGCCAAAAG
CAGCAACCTGTCCATTGACGCCTCACGGGACTTCGGACCACTCTACATAT
TGGCATCCGTCTGTGGTCTCTGCTTTGGCTTTGTCTCCACCTATGAAAAA
GGGATTTTAGCAAGCATGCTTTGGCCGCGAGGCGCGCAGCAGCAGCAATT
CTACACTCCATCCCACGACCCATCACTCGCCGCGGCGGGTATTGGAGTGG
GGCAGGTTTGTGGGCTTTTTATAGCGTTCAATGCATTGTTGGAGTGGGCG
CCCACTTTTTTATTTGCAGCGTTTACAAGATATTCAGCCACTTCAGCTTT
GTGGGCGCTCGCACTCTTTTTTGGCTTAAGTGTTTTCGTTTTTGTAGTAT
TTGTCATTCTGGAAGGAGCGCGGGAGCGGCGAGAAAGTGAAAGGGGGGGA
GGAGGAGAGGGAGAAGGAAGAAAGGGCTCAACAGATGATTCCTTAAATGA
CATAATACCCCAGCTGAGTCGGCGCAAATCCTCCTCGCTCTTGCAGCCTT
TGCCCTCTCACCTTTCTACCATTGCGGAGTCTTCCTATGAAGGGACAAGG
CGTGTAGGGGAAAGGTCTTCATCCACCGTCTCTTGTTCTTATCTGTCTGA
TCTTTCAACCGCAGCCTCGTAA

Synonyms

Publications