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Properties
| Property Name | Value |
|---|
| TranscriptId | 672621 |
| Track | FilteredModels2 |
| ProteinId | 672535 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:396437..398904 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6669 ID=mRNA_6669|Name=jgi.p|Nanoce1779_2|672535|organism=Nannochloropsis oceanica|type=mRNA|length=2150bp
GCCGCATTCTATCTTCTCACATGAACCGGTTCAGCACCCTACCTCTCGCA
CCGACTGCCTTGTCCTTTTTTAATGCGTATGTGTTTCTGGACTGTGGACT
AAACGGAAGGCTGCCGATTGGTAGGGTGCCCCGAGACATTCCTTTTCCAG
GGCAGCAAAACCTCTCATTGCCTTTGTTCCCGGATTTCCTTGCACAGGCC
TCAAGCACAGGCATCGCGCCATTGCGCCATCTGAGGATTTTTTCACTACC
CCCCATGCATGCCAGCACCCGCCTGCCCCCACTAGAGGCGGCACGGCAAA
GCAGCGGCCTTCAAACGCAACAGCAGGAGGCCAAAAAGAGGAAAAAAAGC
ACCGCCGCCCACGCCATAGCAAACGCCTTCTTCTCCTCCACCCTAACCTG
GCTCCTGTGGTCACTCTACTGCGTGCTAGCAGGCTCCCTTTTCGTTGATA
TATTTTATCCGCGTGAATGGCGGGCCTCGGAACATCGCCTCCTACGTATC
CTCAACTACTTTACTCGGCCCATCGGCGGCATCTTCTTCGGACACCTAGG
TGACACATGGGGACGAACCAAAACCCTTACTGTCTGCCTCTGCGTTATGG
GGCTCGCCTCTGCGTGCATTGGTCTTCTCCCCACGGAAGACACATGGGGT
TGGGGGTCTTGGTACCTGCTTCTCTCGCTGCACGCACTTCAGGGCTTGGC
CGTGGGCGGGGAGTGGGGCGGTTGCTTACTCTTAGTTTACGAATTTTGCC
GTCACGATCGGAATAAGGGCCTCGTTTCAGCCCTTCCCCAAGCAGGACGG
GCCTTGGGTTTTATGCTCTCCTCCTACATTACGGCCAGCTTATATGACGA
CACTCCCTCCCCTTCCGATGCTGACAATGGCGGTGGTATCCTGAAACTCC
CCGAGAAAGACCTCCGTTGGCGCCTGGCACATGCGCTTGCCATCGGCCTC
CTCCTCCTCGCCCTCCATCTCCGCCTCCGCATCCCCGAATCACCTGAATT
CCGCTTATTACAAAAGCATCAACGTCTTCGCTCCTGGCCCCTGGGTGAAG
CGCTTAAAACGCAAACGGCTAACATTCTCTGGGTGTTGGGCGCCCTTTGG
TTGGATGGAGTGGTCCAGGTGATGGTGGTGGGGTGGGGTTTACCCACTCT
ACTCGCAGAACGTGGGATTTCAATAGATGCCTTGCTCTCTTCCTTGTCGA
TAGCAGCTTTTGTCGAGGCACTTTTCACGGTGGTGGGCGGGTGGCTTGGG
GATAGAGTTGGGAGGCGAAAATTGTTCTTTGTGGCTTCGATGAGCATAGC
CGTTGGGACTGTGTTTTACTTTCATGCCCTCTTTCAGTTGTCGAGCCCGA
CGAGGGTTGTTCCTATGTATGTGGCCAATATATTGTATCTGGGTGTGGCG
TATGGCATGTTGCAAGGTGCATTCCCGGCGCTGCTTGTCGAAGTGTTTCC
TTCGAATGTGAGGTACAGTGGAGTGTCGCTTGTTTATAACATCTCCCGAG
TTTACTCGTCGGGAGCTTGGCCCTACGTCAGTCAGGCGCTTTTGGCGGCA
GGAAAAGGGTCCAAGTTTAGTTTTCTGGCTTTGGAAAATGGAGTGAACCC
TGTAGGCTTGGTCCTATTCGTGTCGCTTGTTGCTGTAGTGGCCGCGGTGA
GTGTGCTAATGATCCAGATTTATTCAAGCGGAGGGCGGGGTGGAGTGCCC
GTGCCGTTCAATGTCTTGTCGAGAAGGAGTAAGGTGAGGGAGCACGTGGG
AGGGGGGATTCAGCAGCAGCTGCAGAGGGAGCAGATGGAGAAGGGGCTGG
GTGTGGCGGGGGAGGAGGGGCAGGAAGAGGAAAATGCGCAGCAGGGAGGA
GTGGGGATGAGGGAGCAGGAGAGAGGAATGGAGTTTGTGGGACAGGGGAG
CTGGCGGAGAAGGGGAAGGAGGAGAGAAGAGAGGTCTGATGCAGGTGGTG
GAGGGCTAGACGTCAAGACGGAGGAACAGAAGTACTATCTGGAGGGCGAG
GAGGAGGAGGAGGAGGACTACGACGACGACATTGATGACAGCTATTACGA
AGACGGCGAGGAGGAAGAGGACGATCAGGATGACTCGGCCTCATCTGTAT
TCTCGGATTTCGACGAAGAACGAGAACAAGATCTCCACCCTCGGCAATAA back to topprotein sequence of jgi.p|Nanoce1779_2|672535 >mRNA_6669-protein ID=mRNA_6669-protein|Name=jgi.p|Nanoce1779_2|672535|organism=Nannochloropsis oceanica|type=polypeptide|length=710bp
MNRFSTLPLAPTALSFFNAYVFLDCGLNGRLPIGRVPRDIPFPGQQNLSL
PLFPDFLAQASSTGIAPLRHLRIFSLPPMHASTRLPPLEAARQSSGLQTQ
QQEAKKRKKSTAAHAIANAFFSSTLTWLLWSLYCVLAGSLFVDIFYPREW
RASEHRLLRILNYFTRPIGGIFFGHLGDTWGRTKTLTVCLCVMGLASACI
GLLPTEDTWGWGSWYLLLSLHALQGLAVGGEWGGCLLLVYEFCRHDRNKG
LVSALPQAGRALGFMLSSYITASLYDDTPSPSDADNGGGILKLPEKDLRW
RLAHALAIGLLLLALHLRLRIPESPEFRLLQKHQRLRSWPLGEALKTQTA
NILWVLGALWLDGVVQVMVVGWGLPTLLAERGISIDALLSSLSIAAFVEA
LFTVVGGWLGDRVGRRKLFFVASMSIAVGTVFYFHALFQLSSPTRVVPMY
VANILYLGVAYGMLQGAFPALLVEVFPSNVRYSGVSLVYNISRVYSSGAW
PYVSQALLAAGKGSKFSFLALENGVNPVGLVLFVSLVAVVAAVSVLMIQI
YSSGGRGGVPVPFNVLSRRSKVREHVGGGIQQQLQREQMEKGLGVAGEEG
QEEENAQQGGVGMREQERGMEFVGQGSWRRRGRRREERSDAGGGGLDVKT
EEQKYYLEGEEEEEEDYDDDIDDSYYEDGEEEEDDQDDSASSVFSDFDEE
REQDLHPRQ* back to topmRNA from alignment at scaffold_18:396437..398904- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6669 ID=mRNA_6669|Name=jgi.p|Nanoce1779_2|672535|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at scaffold_18:396437..398904- (Nannochloropsis oceanica)
GCCGCATTCTATCTTCTCACATGAACCGGTTCAGCACCCTACCTCTCGCA
CCGACTGCCTTGTCCTTTTTTAATGCGTATGTGTTTCTGGACTGTGGACT
AAACGGAAGGCTGCCGATTGGTAGGGTGCCCCGAGACATTCCTTTTCCAG
GGCAGCAAAACCTCTCATTGCCTTTGTTCCCGGATTTCCTTGCACAGGCC
TCAAGCACAGGCATCGCGCCATTGCGCCATCTGAGGATTTTTTCACTACC
CCCCATGCATGCCAGCACCCGCCTGCCCCCACTAGAGGCGGCACGGCAAA
GCAGCGGCCTTCAAACGCAACAGCAGGAGGCCAAAAAGGTGCGTGTCGTG
AATGGGAGGGTCGACGTGGTGTGTTCCGTGCACGCCGTACCTTTGCATGT
GGTTCCGGGGAAGGAGCGGTGCTGGTCAAGCGGGCGCTCCTCCATAAGTC
GATGCTGTAGCCTGCTACCTGTCCCAGCCCTGCAAGCCGGTACCAAGCCA
TCAAGGGGATGACGAGCATGTATCCTTCATCTCTTATCGAAGTGGCCATG
ATCCCGGCGACCCCCGTGCATGACCCACACTCCACTCAAACTGCACTACT
TCTTTTCCTGAAGTCTCAAATTAACTTCAATCCCTCCTCTTTTCTCATTT
CTGCAGAGGAAAAAAAGCACCGCCGCCCACGCCATAGCAAACGCCTTCTT
CTCCTCCACCCTAACCTGGCTCCTGTGGTCACTCTACTGCGTGCTAGCAG
GCTCCCTTTTCGTTGATATATTTTATCCGCGTGAATGGCGGGCCTCGGAA
CATCGCCTCCTACGTATCCTCAACTACTTTACTCGGCCCATCGGCGGCAT
CTTCTTCGGACACCTAGGTGACACATGGGGACGAACCAAAACCCTTACTG
TCTGCCTCTGCGTTATGGGGCTCGCCTCTGCGTGCATTGGTCTTCTCCCC
ACGGAAGACACATGGGGTTGGGGGTCTTGGTACCTGCTTCTCTCGCTGCA
CGCACTTCAGGGCTTGGCCGTGGGCGGGGAGTGGGGCGGTTGCTTACTCT
TAGTTTACGAATTTTGCCGTCACGATCGGAATAAGGGCCTCGTTTCAGCC
CTTCCCCAAGCAGGACGGGCCTTGGGTTTTATGCTCTCCTCCTACATTAC
GGCCAGCTTATATGACGACACTCCCTCCCCTTCCGATGCTGACAATGGCG
GTGGTATCCTGAAACTCCCCGAGAAAGACCTCCGTTGGCGCCTGGCACAT
GCGCTTGCCATCGGCCTCCTCCTCCTCGCCCTCCATCTCCGCCTCCGCAT
CCCCGAATCACCTGAATTCCGCTTATTACAAAAGCATCAACGTCTTCGCT
CCTGGCCCCTGGGTGAAGCGCTTAAAACGCAAACGGCTAACATTCTCTGG
GTGTTGGGCGCCCTTTGGTTGGATGGAGTGGTCCAGGTGATGGTGGTGGG
GTGGGGTTTACCCACTCTACTCGCAGAACGTGGGATTTCAATAGATGCCT
TGCTCTCTTCCTTGTCGATAGCAGCTTTTGTCGAGGCACTTTTCACGGTG
GTGGGCGGGTGGCTTGGGGATAGAGTTGGGAGGCGAAAATTGTTCTTTGT
GGCTTCGATGAGCATAGCCGTTGGGACTGTGTTTTACTTTCATGCCCTCT
TTCAGTTGTCGAGCCCGACGAGGGTTGTTCCTATGTATGTGGCCAATATA
TTGTATCTGGGTGTGGCGTATGGCATGTTGCAAGGTGCATTCCCGGCGCT
GCTTGTCGAAGTGTTTCCTTCGAATGTGAGGTACAGTGGAGTGTCGCTTG
TTTATAACATCTCCCGAGTTTACTCGTCGGGAGCTTGGCCCTACGTCAGT
CAGGCGCTTTTGGCGGCAGGAAAAGGGTCCAAGTTTAGTTTTCTGGCTTT
GGAAAATGGAGTGAACCCTGTAGGCTTGGTCCTATTCGTGTCGCTTGTTG
CTGTAGTGGCCGCGGTGAGTGTGCTAATGATCCAGATTTATTCAAGCGGA
GGGCGGGGTGGAGTGCCCGTGCCGTTCAATGTCTTGTCGAGAAGGAGTAA
GGTGAGGGAGCACGTGGGAGGGGGGATTCAGCAGCAGCTGCAGAGGGAGC
AGATGGAGAAGGGGCTGGGTGTGGCGGGGGAGGAGGGGCAGGAAGAGGAA
AATGCGCAGCAGGGAGGAGTGGGGATGAGGGAGCAGGAGAGAGGAATGGA
GTTTGTGGGACAGGGGAGCTGGCGGAGAAGGGGAAGGAGGAGAGAAGAGA
GGTCTGATGCAGGTGGTGGAGGGCTAGACGTCAAGACGGAGGAACAGAAG
TACTATCTGGAGGGCGAGGAGGAGGAGGAGGAGGACTACGACGACGACAT
TGATGACAGCTATTACGAAGACGGCGAGGAGGAAGAGGACGATCAGGATG
ACTCGGCCTCATCTGTATTCTCGGATTTCGACGAAGAACGAGAACAAGAT
CTCCACCCTCGGCAATAA back to topCoding sequence (CDS) from alignment at scaffold_18:396437..398904- >mRNA_6669 ID=mRNA_6669|Name=jgi.p|Nanoce1779_2|672535|organism=Nannochloropsis oceanica|type=CDS|length=4260bp|location=Sequence derived from alignment at scaffold_18:396437..398904- (Nannochloropsis oceanica)
AGGAAAAAAAGCACCGCCGCCCACGCCATAGCAAACGCCTTCTTCTCCTC
CACCCTAACCTGGCTCCTGTGGTCACTCTACTGCGTGCTAGCAGGCTCCC
TTTTCGTTGATATATTTTATCCGCGTGAATGGCGGGCCTCGGAACATCGC
CTCCTACGTATCCTCAACTACTTTACTCGGCCCATCGGCGGCATCTTCTT
CGGACACCTAGGTGACACATGGGGACGAACCAAAACCCTTACTGTCTGCC
TCTGCGTTATGGGGCTCGCCTCTGCGTGCATTGGTCTTCTCCCCACGGAA
GACACATGGGGTTGGGGGTCTTGGTACCTGCTTCTCTCGCTGCACGCACT
TCAGGGCTTGGCCGTGGGCGGGGAGTGGGGCGGTTGCTTACTCTTAGTTT
ACGAATTTTGCCGTCACGATCGGAATAAGGGCCTCGTTTCAGCCCTTCCC
CAAGCAGGACGGGCCTTGGGTTTTATGCTCTCCTCCTACATTACGGCCAG
CTTATATGACGACACTCCCTCCCCTTCCGATGCTGACAATGGCGGTGGTA
TCCTGAAACTCCCCGAGAAAGACCTCCGTTGGCGCCTGGCACATGCGCTT
GCCATCGGCCTCCTCCTCCTCGCCCTCCATCTCCGCCTCCGCATCCCCGA
ATCACCTGAATTCCGCTTATTACAAAAGCATCAACGTCTTCGCTCCTGGC
CCCTGGGTGAAGCGCTTAAAACGCAAACGGCTAACATTCTCTGGGTGTTG
GGCGCCCTTTGGTTGGATGGAGTGGTCCAGGTGATGGTGGTGGGGTGGGG
TTTACCCACTCTACTCGCAGAACGTGGGATTTCAATAGATGCCTTGCTCT
CTTCCTTGTCGATAGCAGCTTTTGTCGAGGCACTTTTCACGGTGGTGGGC
GGGTGGCTTGGGGATAGAGTTGGGAGGCGAAAATTGTTCTTTGTGGCTTC
GATGAGCATAGCCGTTGGGACTGTGTTTTACTTTCATGCCCTCTTTCAGT
TGTCGAGCCCGACGAGGGTTGTTCCTATGTATGTGGCCAATATATTGTAT
CTGGGTGTGGCGTATGGCATGTTGCAAGGTGCATTCCCGGCGCTGCTTGT
CGAAGTGTTTCCTTCGAATGTGAGGTACAGTGGAGTGTCGCTTGTTTATA
ACATCTCCCGAGTTTACTCGTCGGGAGCTTGGCCCTACGTCAGTCAGGCG
CTTTTGGCGGCAGGAAAAGGGTCCAAGTTTAGTTTTCTGGCTTTGGAAAA
TGGAGTGAACCCTGTAGGCTTGGTCCTATTCGTGTCGCTTGTTGCTGTAG
TGGCCGCGGTGAGTGTGCTAATGATCCAGATTTATTCAAGCGGAGGGCGG
GGTGGAGTGCCCGTGCCGTTCAATGTCTTGTCGAGAAGGAGTAAGGTGAG
GGAGCACGTGGGAGGGGGGATTCAGCAGCAGCTGCAGAGGGAGCAGATGG
AGAAGGGGCTGGGTGTGGCGGGGGAGGAGGGGCAGGAAGAGGAAAATGCG
CAGCAGGGAGGAGTGGGGATGAGGGAGCAGGAGAGAGGAATGGAGTTTGT
GGGACAGGGGAGCTGGCGGAGAAGGGGAAGGAGGAGAGAAGAGAGGTCTG
ATGCAGGTGGTGGAGGGCTAGACGTCAAGACGGAGGAACAGAAGTACTAT
CTGGAGGGCGAGGAGGAGGAGGAGGAGGACTACGACGACGACATTGATGA
CAGCTATTACGAAGACGGCGAGGAGGAAGAGGACGATCAGGATGACTCGG
CCTCATCTGTATTCTCGGATTTCGACGAAGAACGAGAACAAGATCTCCAC
CCTCGGCAATAAATGAACCGGTTCAGCACCCTACCTCTCGCACCGACTGC
CTTGTCCTTTTTTAATGCGTATGTGTTTCTGGACTGTGGACTAAACGGAA
GGCTGCCGATTGGTAGGGTGCCCCGAGACATTCCTTTTCCAGGGCAGCAA
AACCTCTCATTGCCTTTGTTCCCGGATTTCCTTGCACAGGCCTCAAGCAC
AGGCATCGCGCCATTGCGCCATCTGAGGATTTTTTCACTACCCCCCATGC
ATGCCAGCACCCGCCTGCCCCCACTAGAGGCGGCACGGCAAAGCAGCGGC
CTTCAAACGCAACAGCAGGAGGCCAAAAAGAGGAAAAAAAGCACCGCCGC
CCACGCCATAGCAAACGCCTTCTTCTCCTCCACCCTAACCTGGCTCCTGT
GGTCACTCTACTGCGTGCTAGCAGGCTCCCTTTTCGTTGATATATTTTAT
CCGCGTGAATGGCGGGCCTCGGAACATCGCCTCCTACGTATCCTCAACTA
CTTTACTCGGCCCATCGGCGGCATCTTCTTCGGACACCTAGGTGACACAT
GGGGACGAACCAAAACCCTTACTGTCTGCCTCTGCGTTATGGGGCTCGCC
TCTGCGTGCATTGGTCTTCTCCCCACGGAAGACACATGGGGTTGGGGGTC
TTGGTACCTGCTTCTCTCGCTGCACGCACTTCAGGGCTTGGCCGTGGGCG
GGGAGTGGGGCGGTTGCTTACTCTTAGTTTACGAATTTTGCCGTCACGAT
CGGAATAAGGGCCTCGTTTCAGCCCTTCCCCAAGCAGGACGGGCCTTGGG
TTTTATGCTCTCCTCCTACATTACGGCCAGCTTATATGACGACACTCCCT
CCCCTTCCGATGCTGACAATGGCGGTGGTATCCTGAAACTCCCCGAGAAA
GACCTCCGTTGGCGCCTGGCACATGCGCTTGCCATCGGCCTCCTCCTCCT
CGCCCTCCATCTCCGCCTCCGCATCCCCGAATCACCTGAATTCCGCTTAT
TACAAAAGCATCAACGTCTTCGCTCCTGGCCCCTGGGTGAAGCGCTTAAA
ACGCAAACGGCTAACATTCTCTGGGTGTTGGGCGCCCTTTGGTTGGATGG
AGTGGTCCAGGTGATGGTGGTGGGGTGGGGTTTACCCACTCTACTCGCAG
AACGTGGGATTTCAATAGATGCCTTGCTCTCTTCCTTGTCGATAGCAGCT
TTTGTCGAGGCACTTTTCACGGTGGTGGGCGGGTGGCTTGGGGATAGAGT
TGGGAGGCGAAAATTGTTCTTTGTGGCTTCGATGAGCATAGCCGTTGGGA
CTGTGTTTTACTTTCATGCCCTCTTTCAGTTGTCGAGCCCGACGAGGGTT
GTTCCTATGTATGTGGCCAATATATTGTATCTGGGTGTGGCGTATGGCAT
GTTGCAAGGTGCATTCCCGGCGCTGCTTGTCGAAGTGTTTCCTTCGAATG
TGAGGTACAGTGGAGTGTCGCTTGTTTATAACATCTCCCGAGTTTACTCG
TCGGGAGCTTGGCCCTACGTCAGTCAGGCGCTTTTGGCGGCAGGAAAAGG
GTCCAAGTTTAGTTTTCTGGCTTTGGAAAATGGAGTGAACCCTGTAGGCT
TGGTCCTATTCGTGTCGCTTGTTGCTGTAGTGGCCGCGGTGAGTGTGCTA
ATGATCCAGATTTATTCAAGCGGAGGGCGGGGTGGAGTGCCCGTGCCGTT
CAATGTCTTGTCGAGAAGGAGTAAGGTGAGGGAGCACGTGGGAGGGGGGA
TTCAGCAGCAGCTGCAGAGGGAGCAGATGGAGAAGGGGCTGGGTGTGGCG
GGGGAGGAGGGGCAGGAAGAGGAAAATGCGCAGCAGGGAGGAGTGGGGAT
GAGGGAGCAGGAGAGAGGAATGGAGTTTGTGGGACAGGGGAGCTGGCGGA
GAAGGGGAAGGAGGAGAGAAGAGAGGTCTGATGCAGGTGGTGGAGGGCTA
GACGTCAAGACGGAGGAACAGAAGTACTATCTGGAGGGCGAGGAGGAGGA
GGAGGAGGACTACGACGACGACATTGATGACAGCTATTACGAAGACGGCG
AGGAGGAAGAGGACGATCAGGATGACTCGGCCTCATCTGTATTCTCGGAT
TTCGACGAAGAACGAGAACAAGATCTCCACCCTCGGCAATAAATGAACCG
GTTCAGCACCCTACCTCTCGCACCGACTGCCTTGTCCTTTTTTAATGCGT
ATGTGTTTCTGGACTGTGGACTAAACGGAAGGCTGCCGATTGGTAGGGTG
CCCCGAGACATTCCTTTTCCAGGGCAGCAAAACCTCTCATTGCCTTTGTT
CCCGGATTTCCTTGCACAGGCCTCAAGCACAGGCATCGCGCCATTGCGCC
ATCTGAGGATTTTTTCACTACCCCCCATGCATGCCAGCACCCGCCTGCCC
CCACTAGAGGCGGCACGGCAAAGCAGCGGCCTTCAAACGCAACAGCAGGA
GGCCAAAAAG back to top
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