jgi.p|Nanoce1779_2|544912, mRNA_6667 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|544912
Unique NamemRNA_6667
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1437
Alignment locationscaffold_18:395193..396768 +

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Properties
Property NameValue
TranscriptId544998
TrackFilteredModels2
ProteinId544912
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:395193..396768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544912gene_6667Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544912mRNA_6667-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6667CDS_6667Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6667 ID=mRNA_6667|Name=jgi.p|Nanoce1779_2|544912|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
ATGGGACCCGAAATGTATACCGAAGCTGTGGAGCTTATCACCATGGCGGT
CGACAAGCACGCTACTTCCAAAAACTATGAGGCCGCCGCCACGATGATGA
AAAATACGTTTGACAAGAAATTTGGAAGTCACTGGCACGTTGCGATCGGG
GAGGGCTTCGGATTCGAGGTGACGCATCAGCAACGGCACATTATATATGT
TTTCTTTGGGACGTTGGGCGTGCTATGTTACAAAATGTGAGAGTGATTGA
TTGAGGGAATCTGCGGAGCGAAGGAAGAGACACCTAGGTGTGCAAAGAGA
AAGAGATAGAGGTGTGTGTCATCGCCCCTCTTTGATCATGTACGTGTGAA
AATTAGCGGTATTAGTCTATTTTCCATTTTTGTAGCCTTGTTAATTGCTC
CAGGATTGTGCGTGATATTGGGTTACTCACGACACTCTTTCGTGTTGCTC
CTTTCACAGGCGGGCGCCTTTCTCTTTTCCGCCTTTTTCCTGCATGTTGT
CTAAGTATGGAGGAAGGGATTTTGTTCAGTATCCCAATGTTTGTTCACTC
AAACAGATGGACACACTAACACGCTAGCTGCTTTTCACCAATAATTACAA
ATCTGCCTTTTCTTATTCTTTGCTATCTCTTCGAGGTCTCCCTCTTGACG
CTTCGCTGTACGATACTGCTGTTGCTGTTGCTACTGCTGTTTGTGCTGCT
TGTGTGCCAGCGGCAACCAGGGCTATTCTGACTGTACATTTCATGACCCA
TATTTGAGTTTTATTCCTCGTTTCAGAATTTGTTCTTGTTATTCTGCTTT
TCCTTATTCTCGGCTCCCTGTCCGAGATCTGCCTTTTTACGCTTTCCTGT
ACGACGCTGCTGTTGCTGTTCATGTTCTGGCGGCGGCTTGGTGACCCTAT
TTTTCATTCCCACGTTTGCTTTACGTTTGCTTTCTTTAAAACCACTCAAA
CACTGCTTGGCGCAACTCTAAATATCATACGACTCCCTTCGGTCCCTTTT
CATCCCCGACCGTTTAATCGCCGTGGATTTCGTCCCGCGTCCCCGACATA
TACATCTCTCCGTTTACGGCGCCGGCGGCTGCTGCTCCGCTGAATGCTGC
CACTATTATTGCCGAGGGTGGAGATCTTGTTCTCGTTCTTCGTCGAAATC
CGAGAATACAGATGAGGCCGAGTCATCCTGATCGTCCTCTTCCTCCTCGC
CGTCTTCGTAATAGCTGTCATCAATGTCGTCGTCGTAGTCCTCCTCCTCC
TCCTCCTCGCCCTCCAGATAGTACTTCTGTTCCTCCGTCTTGACGTCTAG
CCCTCCACCACCTGCATCAGACCTCTCTTCTCTCCTCCTTCCCCTTCTCC
GCCAGCTCCCCTGTCCCACAAACTCCATTCCTCTCTCCTGCTCCCTCATC
CCCACTCCTCCCTGCTGCGCATTTTCCTCTTCCTGCC
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protein sequence of jgi.p|Nanoce1779_2|544912

>mRNA_6667-protein ID=mRNA_6667-protein|Name=jgi.p|Nanoce1779_2|544912|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MGPEMYTEAVELITMAVDKHATSKNYEAAATMMKNTFDKKFGSHWHVAIG
EGFGFEVTHQQRHIIYVFFGTLGVLCYKM*
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mRNA from alignment at scaffold_18:395193..396768+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6667 ID=mRNA_6667|Name=jgi.p|Nanoce1779_2|544912|organism=Nannochloropsis oceanica|type=mRNA|length=1576bp|location=Sequence derived from alignment at scaffold_18:395193..396768+ (Nannochloropsis oceanica)
ATGGGACCCGAAATGTATACCGAAGCTGTGGAGCTTATCACCATGGCGGT
CGACAAGCACGCTACTTCCAAAAACTATGAGGCCGCCGCCACGATGATGA
AAGTGAGCTTTTTGAGGTGTCTATTTATGAAATGTCCTGGGTAGCATAAC
CATCTGTTTCCTCCTTCCAGTCTTTACGCACAATCTTGCACTTCTCACGC
CGCCCCCTTCGTTTCTGCTCAATCCTACTTTATAAAAACAGAATACGTTT
GACAAGAAATTTGGAAGTCACTGGCACGTTGCGATCGGGGAGGGCTTCGG
ATTCGAGGTGACGCATCAGCAACGGCACATTATATATGTTTTCTTTGGGA
CGTTGGGCGTGCTATGTTACAAAATGTGAGAGTGATTGATTGAGGGAATC
TGCGGAGCGAAGGAAGAGACACCTAGGTGTGCAAAGAGAAAGAGATAGAG
GTGTGTGTCATCGCCCCTCTTTGATCATGTACGTGTGAAAATTAGCGGTA
TTAGTCTATTTTCCATTTTTGTAGCCTTGTTAATTGCTCCAGGATTGTGC
GTGATATTGGGTTACTCACGACACTCTTTCGTGTTGCTCCTTTCACAGGC
GGGCGCCTTTCTCTTTTCCGCCTTTTTCCTGCATGTTGTCTAAGTATGGA
GGAAGGGATTTTGTTCAGTATCCCAATGTTTGTTCACTCAAACAGATGGA
CACACTAACACGCTAGCTGCTTTTCACCAATAATTACAAATCTGCCTTTT
CTTATTCTTTGCTATCTCTTCGAGGTCTCCCTCTTGACGCTTCGCTGTAC
GATACTGCTGTTGCTGTTGCTACTGCTGTTTGTGCTGCTTGTGTGCCAGC
GGCAACCAGGGCTATTCTGACTGTACATTTCATGACCCATATTTGAGTTT
TATTCCTCGTTTCAGAATTTGTTCTTGTTATTCTGCTTTTCCTTATTCTC
GGCTCCCTGTCCGAGATCTGCCTTTTTACGCTTTCCTGTACGACGCTGCT
GTTGCTGTTCATGTTCTGGCGGCGGCTTGGTGACCCTATTTTTCATTCCC
ACGTTTGCTTTACGTTTGCTTTCTTTAAAACCACTCAAACACTGCTTGGC
GCAACTCTAAATATCATACGACTCCCTTCGGTCCCTTTTCATCCCCGACC
GTTTAATCGCCGTGGATTTCGTCCCGCGTCCCCGACATATACATCTCTCC
GTTTACGGCGCCGGCGGCTGCTGCTCCGCTGAATGCTGCCACTATTATTG
CCGAGGGTGGAGATCTTGTTCTCGTTCTTCGTCGAAATCCGAGAATACAG
ATGAGGCCGAGTCATCCTGATCGTCCTCTTCCTCCTCGCCGTCTTCGTAA
TAGCTGTCATCAATGTCGTCGTCGTAGTCCTCCTCCTCCTCCTCCTCGCC
CTCCAGATAGTACTTCTGTTCCTCCGTCTTGACGTCTAGCCCTCCACCAC
CTGCATCAGACCTCTCTTCTCTCCTCCTTCCCCTTCTCCGCCAGCTCCCC
TGTCCCACAAACTCCATTCCTCTCTCCTGCTCCCTCATCCCCACTCCTCC
CTGCTGCGCATTTTCCTCTTCCTGCC
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Coding sequence (CDS) from alignment at scaffold_18:395193..396768+

>mRNA_6667 ID=mRNA_6667|Name=jgi.p|Nanoce1779_2|544912|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_18:395193..396768+ (Nannochloropsis oceanica)
ATGGGACCCGAAATGTATACCGAAGCTGTGGAGCTTATCACCATGGCGGT
CGACAAGCACGCTACTTCCAAAAACTATGAGGCCGCCGCCACGATGATGA
AAAATACGTTTGACAAGAAATTTGGAAGTCACTGGCACGTTGCGATCGGG
GAGGGCTTCGGATTCGAGGTGACGCATCAGCAACGGCACATTATATATGT
TTTCTTTGGGACGTTGGGCGTGCTATGTTACAAAATGTGAATGGGACCCG
AAATGTATACCGAAGCTGTGGAGCTTATCACCATGGCGGTCGACAAGCAC
GCTACTTCCAAAAACTATGAGGCCGCCGCCACGATGATGAAAAATACGTT
TGACAAGAAATTTGGAAGTCACTGGCACGTTGCGATCGGGGAGGGCTTCG
GATTCGAGGTGACGCATCAGCAACGGCACATTATATATGTTTTCTTTGGG
ACGTTGGGCGTGCTATGTTACAAAATGTGA
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Synonyms
Publications