jgi.p|Nanoce1779_2|597654, mRNA_6666 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597654
Unique NamemRNA_6666
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length428
Alignment locationscaffold_18:393559..393986 -

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Properties
Property NameValue
TranscriptId597740
TrackFilteredModels2
ProteinId597654
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:393559..393986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597654gene_6666Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597654mRNA_6666-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6666CDS_6666Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6666 ID=mRNA_6666|Name=jgi.p|Nanoce1779_2|597654|organism=Nannochloropsis oceanica|type=mRNA|length=428bp
GACGTTTGTTTCTTTCTTTCCAAAGATTTTCAGTGCCTTGACAACCGGGA
ACAACCTCCAAACTTGGTTGTTCACACCCACAAAACAGCCCTCAGACTGC
CAGCTCTCCGCTTGGCCACGCCAGCCTCGCTTACCGCTGACAAAGCTCCG
TTTTATCTTTCCAGCACCGCTTCCCAAATTTCCTTACAAGACGTACATGC
TTCTCAAGTGCTGGAACGTCACATTTTGCCTGTTGTTCGAAATGCCGCAC
ACAGTTGACCAGTGCATTCGCGACCCCTCCTCGCACAATGCTTCCATGCC
ACGCACGACGCGCTACGTAGGCAGCATGGGAACTTGCTGTTGCGTTTGTC
GACTTTACGCCCCTGACAAGTTCCTGCACAACCCATTTCCAACCCCACCA
ACCCACAGACAGCTCCGAACACGTTAAT
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protein sequence of jgi.p|Nanoce1779_2|597654

>mRNA_6666-protein ID=mRNA_6666-protein|Name=jgi.p|Nanoce1779_2|597654|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MLLKCWNVTFCLLFEMPHTVDQCIRDPSSHNASMPRTTRYVGSMGTCCCV
CRLYAPDKFLHNPFPTPPTHRQLRTR*
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mRNA from alignment at scaffold_18:393559..393986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6666 ID=mRNA_6666|Name=jgi.p|Nanoce1779_2|597654|organism=Nannochloropsis oceanica|type=mRNA|length=428bp|location=Sequence derived from alignment at scaffold_18:393559..393986- (Nannochloropsis oceanica)
GACGTTTGTTTCTTTCTTTCCAAAGATTTTCAGTGCCTTGACAACCGGGA
ACAACCTCCAAACTTGGTTGTTCACACCCACAAAACAGCCCTCAGACTGC
CAGCTCTCCGCTTGGCCACGCCAGCCTCGCTTACCGCTGACAAAGCTCCG
TTTTATCTTTCCAGCACCGCTTCCCAAATTTCCTTACAAGACGTACATGC
TTCTCAAGTGCTGGAACGTCACATTTTGCCTGTTGTTCGAAATGCCGCAC
ACAGTTGACCAGTGCATTCGCGACCCCTCCTCGCACAATGCTTCCATGCC
ACGCACGACGCGCTACGTAGGCAGCATGGGAACTTGCTGTTGCGTTTGTC
GACTTTACGCCCCTGACAAGTTCCTGCACAACCCATTTCCAACCCCACCA
ACCCACAGACAGCTCCGAACACGTTAAT
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Coding sequence (CDS) from alignment at scaffold_18:393559..393986-

>mRNA_6666 ID=mRNA_6666|Name=jgi.p|Nanoce1779_2|597654|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_18:393559..393986- (Nannochloropsis oceanica)
ATGCTTCTCAAGTGCTGGAACGTCACATTTTGCCTGTTGTTCGAAATGCC
GCACACAGTTGACCAGTGCATTCGCGACCCCTCCTCGCACAATGCTTCCA
TGCCACGCACGACGCGCTACGTAGGCAGCATGGGAACTTGCTGTTGCGTT
TGTCGACTTTACGCCCCTGACAAGTTCCTGCACAACCCATTTCCAACCCC
ACCAACCCACAGACAGCTCCGAACACGTTAA
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Synonyms
Publications