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Properties
| Property Name | Value |
|---|
| TranscriptId | 632162 |
| Track | FilteredModels2 |
| ProteinId | 632076 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:390936..393582 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6665 ID=mRNA_6665|Name=jgi.p|Nanoce1779_2|632076|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
ACAGACAGCTCCGAACACGTTAATAAGATCTCGCCGACAACATGCCTGCT
TTAGACCGTGCCAACCTGCGCAAGGGCAAGTGGACGCACGAGGAGGAAGA
ATTCTCACAGAGCATCATCAATTATTTCAACACGGGTCTCCTGCCCTTGC
CGGAGGGCACCACGCTCCGTGCTTACCTGGCGGAAAAGCTCAAGTGCGAC
CCTATGCGTATCACCAAGAAGTTCACCGGCTCCTCCTGCCTGGGCAAGCG
CATCTACCACTCTTCCTCGTCCCGCTCTCAGTGCACGGACAGCAGCCTGA
CCATGGCTGTTGAGGATGCCAAGAGGCACTTAGCACAGTTGGAGTCGCGG
CTGTGGCAGCGTCTGGAGAGAAATAGGGATAACAAGGAATATATGGGGTG
TTTGGATTATGGTGCGGGTGTGTACGTGCACGCAAACATCATCTCTACGC
CGGCAATTGACGCGTTATTGCTTCAAAGTCGGAATGATCCTTGTTTCTGG
AATGACGATAATGTGGGCGCGTCGACGAAGTGGGAAGGAGGGGCGGAGGA
AGGGGAAGAGGATGAAGAGGAGGAGGAGGAGGACATGCCGTCACATTTTG
TTGTGGCACGTCAGGCGAGGGAAGCCGCGAGATGGGGGGCTGAAGGGGCC
GTAGGAGGGTGGGTGTCGATGGGTGTTGGACCGCCGCAATGTAGGCAGCC
GGAGATAGACGTGAGTGGAGAGGAGGGGGAGGAGAGCGAGGACGAAGAAG
AGAAGAAAGCGGGAGGGGCATTAATGCAGGTGGTGAGTCAAATTCGCAAG
AGTGGGAGTCATCAGGATATGGTCGACTTTGTGTGTGAGGTGAACGTGAA
GATGGAGGGCGAGGGAGAGGGGAAAAGGGAGGGGGAGGTGCTGGTGGAGT
GTTAAGGGAGGGAGGGATGGAAGAAGGACGGAGCAAAGGATGGGCCATGT
ACATACGAACTAAGGTGCTCCACCTCCCCCTTCCTATCTACTGTTTGTGC
TTCGACCCATAGATTGTCTCGATCTTTGATGTCTCCACAACGACCTACCG
AGCACCGAGCGTTGGCATATTCGATACGTTTTTGATACTTTTACATATGT
ATGTCTGTATGCAAGTGTGTGAGGCTTTTTTGAATGTTTTATTTTTTGAA
TGTTGAATTATCCTTCCAGTTTCCCAACCCATTTCTCCCGTGCCTTCTGC
GAAGGCGGGAAACCATGCCGGGAACCTATCACCATATTCTGTGATGAGCG
GGGTTGAATTGATATGTCAGCCATATTTTGTGATGATAGGCTCGCAATTA
GTAATATTCGGTGATGAAGATCTTGCATTAATTCGGCCCTGGCACACGGC
ACTTGCTTTTTCCAAAGCTGCGCCGGCCTACATGCCTTGGCCCCTGACCC
CATCCCTTGGGCGAGAGGGAGGAATGGATGCCGCCCTGTTGGACTGGGGT
GTGTTTATCTTCTATTAGTATTGAATGTTTTCATATATTGATCTTCTGTT
TGAAATTTGTCTTTTCTGGTTCTGAGGGAAAAGGTGAGCGGAGGGAGCGT
GGGAGTGAGGGAGGCGGGGTAAAAT back to topprotein sequence of jgi.p|Nanoce1779_2|632076 >mRNA_6665-protein ID=mRNA_6665-protein|Name=jgi.p|Nanoce1779_2|632076|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPALDRANLRKGKWTHEEEEFSQSIINYFNTGLLPLPEGTTLRAYLAEKL
KCDPMRITKKFTGSSCLGKRIYHSSSSRSQCTDSSLTMAVEDAKRHLAQL
ESRLWQRLERNRDNKEYMGCLDYGAGVYVHANIISTPAIDALLLQSRNDP
CFWNDDNVGASTKWEGGAEEGEEDEEEEEEDMPSHFVVARQAREAARWGA
EGAVGGWVSMGVGPPQCRQPEIDVSGEEGEESEDEEEKKAGGALMQVVSQ
IRKSGSHQDMVDFVCEVNVKMEGEGEGKREGEVLVEC* back to topmRNA from alignment at scaffold_18:390936..393582- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6665 ID=mRNA_6665|Name=jgi.p|Nanoce1779_2|632076|organism=Nannochloropsis oceanica|type=mRNA|length=2647bp|location=Sequence derived from alignment at scaffold_18:390936..393582- (Nannochloropsis oceanica)
ACAGACAGCTCCGAACACGTTAATAAGATCTCGCCGACAACATGCCTGCT
TTAGACCGTGCCAACCTGCGCAAGGGCAAGTGGACGGTAAGTGTGGCATG
GGTCTATGTCAGGAAGGAAAGGCGGCGTGGCGGGGTTGACTAGGCCATGT
TTCCCTGACCATTGCCACGTCGAAGCACTCACCCCCGACCCTATGACAAC
TCATCTACAGCACGAGGAGGAAGAATTCTCACAGAGCATCATCAATTATT
TCAACACGGGTCTCCTGCCCTTGCCGGAGGGCACCACGCTCCGTGCTTAC
CTGGCGGAAAAGCTCAAGTGGTAAGTGCCAAGTCAGCCCCTGGAGGAAGG
AGTGCCCACTTCTCCCCCACCCCAAGAGCCCCACCCTACCCCCACATGAC
CCTTTTTTGGTCACCGTTACGCACTTTTTCACACCTCTGCGGCGTCCTTA
CCTGCATGCAATGCCTGCTCGTGGATGGAGGTGGTGCTTTCATCAGCATA
GGGGGGTGACGTGGGCAGGGCGCGGACCTACACTCCTCCAAAAGAACGTC
CCGCTACCACCTGCACCACCACGCATACACCACACACGCATAGACAAAAT
CTGCGCGAATCTTGAAGCACGGCAAAATATTTTCAAGTCATGGACATGCG
CACTGCCTGGGCTGAGGTGGCCCATTCACATGCGTGCCCTGTCCTCAGGC
CTACCCCTCCTTTCCTCGCCCCCTACCTCCCAATCATCCCTGTAGCACTC
ATCTACACCAAATCTCCTACCCAACACCCGCATAAAGATACTACTGTCTG
TTTCGGCATCCTGAGAGACCCTCTTTCTGGCCTTCCCACTCCTGACACCC
CCCCTCCGTCATCCCCCCTCTCCTCACACAGCGACCCTATGCGTATCACC
AAGAAGTTCACCGGCTCCTCCTGCCTGGGCAAGCGCATCTACCACTCTTC
CTCGTCCCGCTCTCAGTGCACGGACAGCAGCCTGACCATGGCTGTTGAGG
ATGCCAAGAGGCACTTAGCACAGTTGGAGTCGCGGCTGTGGCAGCGTCTG
GAGAGAAATAGGGATAACAAGGAATATATGGGGTGTTTGGATTATGGTGC
GGGTGTGTACGTGCACGCAAACATCATCTCTACGCCGGCAATTGACGCGT
TATTGCTTCAAAGTCGGAATGATCCTTGTTTCTGGAATGACGATAATGTG
GGCGCGTCGACGAAGTGGGAAGGAGGGGCGGAGGAAGGGGAAGAGGATGA
AGAGGAGGAGGAGGAGGACATGCCGTCACATTTTGTTGTGGCACGTCAGG
CGAGGGAAGCCGCGAGATGGGGGGCTGAAGGGGCCGTAGGAGGGTGGGTG
TCGATGGGTGTTGGACCGCCGGTGAGGGCGATTTCGTCCTCCTCCTCGTC
CTCCTCCTCGTCCAATTCCTCCAAATGCAGTACCACAAGTTGTGATAGCT
ACAGCACATCTTATTCGTCTTCTCAATACCTGGAGATAGAGAGGTATTCC
ACTGACCCTCAAAATCAGCTTCTGTCTGGCACAACCGACACCAGGAGAAG
CAGCAGTTTCAGCAGCAGCAGCAGTAGCAGCAGTAGCAGCAGCAGCAGTT
TGAGCAGTAACATCAGCAGTCTGAAGCGTCGCCGGCTTGCCGTGCCATCT
GCCACTTCTACCGATGTCGAAGAGGAAGAGGATGACGATGAATGGAGGGG
ATTGGGAAAAGACTGTGATTGGAGCATGCCTAGGGATGAGGAAGACATTT
TCGTTCAGCAATGTAGGCAGCCGGAGATAGACGTGAGTGGAGAGGAGGGG
GAGGAGAGCGAGGACGAAGAAGAGAAGAAAGCGGGAGGGGCATTAATGCA
GGTGGTGAGTCAAATTCGCAAGAGTGGGAGTCATCAGGATATGGTCGACT
TTGTGTGTGAGGTGAACGTGAAGATGGAGGGCGAGGGAGAGGGGAAAAGG
GAGGGGGAGGTGCTGGTGGAGTGTTAAGGGAGGGAGGGATGGAAGAAGGA
CGGAGCAAAGGATGGGCCATGTACATACGAACTAAGGTGCTCCACCTCCC
CCTTCCTATCTACTGTTTGTGCTTCGACCCATAGATTGTCTCGATCTTTG
ATGTCTCCACAACGACCTACCGAGCACCGAGCGTTGGCATATTCGATACG
TTTTTGATACTTTTACATATGTATGTCTGTATGCAAGTGTGTGAGGCTTT
TTTGAATGTTTTATTTTTTGAATGTTGAATTATCCTTCCAGTTTCCCAAC
CCATTTCTCCCGTGCCTTCTGCGAAGGCGGGAAACCATGCCGGGAACCTA
TCACCATATTCTGTGATGAGCGGGGTTGAATTGATATGTCAGCCATATTT
TGTGATGATAGGCTCGCAATTAGTAATATTCGGTGATGAAGATCTTGCAT
TAATTCGGCCCTGGCACACGGCACTTGCTTTTTCCAAAGCTGCGCCGGCC
TACATGCCTTGGCCCCTGACCCCATCCCTTGGGCGAGAGGGAGGAATGGA
TGCCGCCCTGTTGGACTGGGGTGTGTTTATCTTCTATTAGTATTGAATGT
TTTCATATATTGATCTTCTGTTTGAAATTTGTCTTTTCTGGTTCTGAGGG
AAAAGGTGAGCGGAGGGAGCGTGGGAGTGAGGGAGGCGGGGTAAAAT back to topCoding sequence (CDS) from alignment at scaffold_18:390936..393582- >mRNA_6665 ID=mRNA_6665|Name=jgi.p|Nanoce1779_2|632076|organism=Nannochloropsis oceanica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_18:390936..393582- (Nannochloropsis oceanica)
CAATGTAGGCAGCCGGAGATAGACGTGAGTGGAGAGGAGGGGGAGGAGAG
CGAGGACGAAGAAGAGAAGAAAGCGGGAGGGGCATTAATGCAGGTGGTGA
GTCAAATTCGCAAGAGTGGGAGTCATCAGGATATGGTCGACTTTGTGTGT
GAGGTGAACGTGAAGATGGAGGGCGAGGGAGAGGGGAAAAGGGAGGGGGA
GGTGCTGGTGGAGTGTTAACGACCCTATGCGTATCACCAAGAAGTTCACC
GGCTCCTCCTGCCTGGGCAAGCGCATCTACCACTCTTCCTCGTCCCGCTC
TCAGTGCACGGACAGCAGCCTGACCATGGCTGTTGAGGATGCCAAGAGGC
ACTTAGCACAGTTGGAGTCGCGGCTGTGGCAGCGTCTGGAGAGAAATAGG
GATAACAAGGAATATATGGGGTGTTTGGATTATGGTGCGGGTGTGTACGT
GCACGCAAACATCATCTCTACGCCGGCAATTGACGCGTTATTGCTTCAAA
GTCGGAATGATCCTTGTTTCTGGAATGACGATAATGTGGGCGCGTCGACG
AAGTGGGAAGGAGGGGCGGAGGAAGGGGAAGAGGATGAAGAGGAGGAGGA
GGAGGACATGCCGTCACATTTTGTTGTGGCACGTCAGGCGAGGGAAGCCG
CGAGATGGGGGGCTGAAGGGGCCGTAGGAGGGTGGGTGTCGATGGGTGTT
GGACCGCCGCACGAGGAGGAAGAATTCTCACAGAGCATCATCAATTATTT
CAACACGGGTCTCCTGCCCTTGCCGGAGGGCACCACGCTCCGTGCTTACC
TGGCGGAAAAGCTCAAGTGATGCCTGCTTTAGACCGTGCCAACCTGCGCA
AGGGCAAGTGGACGCAATGTAGGCAGCCGGAGATAGACGTGAGTGGAGAG
GAGGGGGAGGAGAGCGAGGACGAAGAAGAGAAGAAAGCGGGAGGGGCATT
AATGCAGGTGGTGAGTCAAATTCGCAAGAGTGGGAGTCATCAGGATATGG
TCGACTTTGTGTGTGAGGTGAACGTGAAGATGGAGGGCGAGGGAGAGGGG
AAAAGGGAGGGGGAGGTGCTGGTGGAGTGTTAACGACCCTATGCGTATCA
CCAAGAAGTTCACCGGCTCCTCCTGCCTGGGCAAGCGCATCTACCACTCT
TCCTCGTCCCGCTCTCAGTGCACGGACAGCAGCCTGACCATGGCTGTTGA
GGATGCCAAGAGGCACTTAGCACAGTTGGAGTCGCGGCTGTGGCAGCGTC
TGGAGAGAAATAGGGATAACAAGGAATATATGGGGTGTTTGGATTATGGT
GCGGGTGTGTACGTGCACGCAAACATCATCTCTACGCCGGCAATTGACGC
GTTATTGCTTCAAAGTCGGAATGATCCTTGTTTCTGGAATGACGATAATG
TGGGCGCGTCGACGAAGTGGGAAGGAGGGGCGGAGGAAGGGGAAGAGGAT
GAAGAGGAGGAGGAGGAGGACATGCCGTCACATTTTGTTGTGGCACGTCA
GGCGAGGGAAGCCGCGAGATGGGGGGCTGAAGGGGCCGTAGGAGGGTGGG
TGTCGATGGGTGTTGGACCGCCGCACGAGGAGGAAGAATTCTCACAGAGC
ATCATCAATTATTTCAACACGGGTCTCCTGCCCTTGCCGGAGGGCACCAC
GCTCCGTGCTTACCTGGCGGAAAAGCTCAAGTGATGCCTGCTTTAGACCG
TGCCAACCTGCGCAAGGGCAAGTGGACGCAATGTAGGCAGCCGGAGATAG
ACGTGAGTGGAGAGGAGGGGGAGGAGAGCGAGGACGAAGAAGAGAAGAAA
GCGGGAGGGGCATTAATGCAGGTGGTGAGTCAAATTCGCAAGAGTGGGAG
TCATCAGGATATGGTCGACTTTGTGTGTGAGGTGAACGTGAAGATGGAGG
GCGAGGGAGAGGGGAAAAGGGAGGGGGAGGTGCTGGTGGAGTGTTAACGA
CCCTATGCGTATCACCAAGAAGTTCACCGGCTCCTCCTGCCTGGGCAAGC
GCATCTACCACTCTTCCTCGTCCCGCTCTCAGTGCACGGACAGCAGCCTG
ACCATGGCTGTTGAGGATGCCAAGAGGCACTTAGCACAGTTGGAGTCGCG
GCTGTGGCAGCGTCTGGAGAGAAATAGGGATAACAAGGAATATATGGGGT
GTTTGGATTATGGTGCGGGTGTGTACGTGCACGCAAACATCATCTCTACG
CCGGCAATTGACGCGTTATTGCTTCAAAGTCGGAATGATCCTTGTTTCTG
GAATGACGATAATGTGGGCGCGTCGACGAAGTGGGAAGGAGGGGCGGAGG
AAGGGGAAGAGGATGAAGAGGAGGAGGAGGAGGACATGCCGTCACATTTT
GTTGTGGCACGTCAGGCGAGGGAAGCCGCGAGATGGGGGGCTGAAGGGGC
CGTAGGAGGGTGGGTGTCGATGGGTGTTGGACCGCCGCACGAGGAGGAAG
AATTCTCACAGAGCATCATCAATTATTTCAACACGGGTCTCCTGCCCTTG
CCGGAGGGCACCACGCTCCGTGCTTACCTGGCGGAAAAGCTCAAGTGATG
CCTGCTTTAGACCGTGCCAACCTGCGCAAGGGCAAGTGGACGCAATGTAG
GCAGCCGGAGATAGACGTGAGTGGAGAGGAGGGGGAGGAGAGCGAGGACG
AAGAAGAGAAGAAAGCGGGAGGGGCATTAATGCAGGTGGTGAGTCAAATT
CGCAAGAGTGGGAGTCATCAGGATATGGTCGACTTTGTGTGTGAGGTGAA
CGTGAAGATGGAGGGCGAGGGAGAGGGGAAAAGGGAGGGGGAGGTGCTGG
TGGAGTGTTAACGACCCTATGCGTATCACCAAGAAGTTCACCGGCTCCTC
CTGCCTGGGCAAGCGCATCTACCACTCTTCCTCGTCCCGCTCTCAGTGCA
CGGACAGCAGCCTGACCATGGCTGTTGAGGATGCCAAGAGGCACTTAGCA
CAGTTGGAGTCGCGGCTGTGGCAGCGTCTGGAGAGAAATAGGGATAACAA
GGAATATATGGGGTGTTTGGATTATGGTGCGGGTGTGTACGTGCACGCAA
ACATCATCTCTACGCCGGCAATTGACGCGTTATTGCTTCAAAGTCGGAAT
GATCCTTGTTTCTGGAATGACGATAATGTGGGCGCGTCGACGAAGTGGGA
AGGAGGGGCGGAGGAAGGGGAAGAGGATGAAGAGGAGGAGGAGGAGGACA
TGCCGTCACATTTTGTTGTGGCACGTCAGGCGAGGGAAGCCGCGAGATGG
GGGGCTGAAGGGGCCGTAGGAGGGTGGGTGTCGATGGGTGTTGGACCGCC
GCACGAGGAGGAAGAATTCTCACAGAGCATCATCAATTATTTCAACACGG
GTCTCCTGCCCTTGCCGGAGGGCACCACGCTCCGTGCTTACCTGGCGGAA
AAGCTCAAGTGATGCCTGCTTTAGACCGTGCCAACCTGCGCAAGGGCAAG
TGGACG back to top
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