jgi.p|Nanoce1779_2|672533, mRNA_6664 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672533
Unique Name	mRNA_6664
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2618
Alignment location	scaffold_18:387399..390380 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672619
Track	FilteredModels2
ProteinId	672533

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:387399..390380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672533	gene_6664	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672533	mRNA_6664-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6664	CDS_6664	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:387399..390380+
coding sequence from alignment at scaffold_18:387399..390380+

mRNA sequence

>mRNA_6664 ID=mRNA_6664|Name=jgi.p|Nanoce1779_2|672533|organism=Nannochloropsis oceanica|type=mRNA|length=2618bp
CCAGATGCAATGGCCCCATAGGGTGACCCGCGCCCAGCTGCATAGCCACA
TCAATGTCTTCCACGCTTGCGTCCCCTCGCTCCTTCATGAGCATTGCTTG
CACCAGGGCCGGCACCAACAATCTGTTTTGTAGGGGGTTGTGCCGAGGGA
GGGATTGAGAGGGGGTCGGGAGGAGGGAGGGACAGAGGAAGCTTTAAGTC
GCGTGATTGCTTGCTTCTCCTCGCTCCTTCATCAACAGCGCTTGCACTGG
GGCAGGGATGATTTACCTAGAAAGGAGGAAGGGAAAGAGGAAACGAGGGA
GGGAGGAGGGTTGAATCCGCCAGATGACATTTCTTTGACTCAGACTTGGT
TGATGAATAAGAAAAAGTTCACGCAAAAATGTATCACTTAACATTTCCAT
AACAACTTCACTCAAGAAACAAATCTACGTGTTGTGCCGAGAAGAAAGAT
ATCAGGGCGTTGTTGTGCTCGTTGCGCTTTCGTTCTCCCTCCCTCCCTCC
CTCCCTCCCCCTCCTTACCTGTTGACAATAAATCCCGGAGTGTCCTTACA
TGTCACAGCTGTCTTGCCAATTCGTTTCACGTACCCCTGCACGGCTTCAA
ACACTCCCTGCTCCGTCTTGTCGAGCTTTACGATCTCCACCAAGCGCATC
AGTTGCACAGGGTTAAAGAAATGTAATCCCACGAATTTTTCGGGTCGACC
GGAAGGATCAGCAAAATCACTTATTTTTAAAGAAGAGGTATTGCTCCCAA
AGATGGCATTGGGCTTGACCAGACTGCCTAGATGCTTGTAGAAGGGGATT
TTGACGTCTTGGAAGGGAAGGAGGGGAGGGAGGGGGGAAGAGAGAGTTAG
TGAATGACTGCGCGGCACATTTTGCGTTATTTAAGAAAGAGCATGGAATG
GTGCAGCCGGAAAAATGCATGCAAATGCCCCACTTAGCCATCCCAGGACT
CTCCATCCAACTTTCTTCCCACCATGATGTTAGTTTCCTCACCCAAATTC
TCCACGATGGCCTCCACCACCAAATCAACATCTTTCAACGACTTCACGTC
CAAGGAATAAGTTATCCGTCCCTCAACCGCTTTTTTCTCTAATTCTGCCG
CCTCCTTTGTCATCTTTCCCTTCTCCACGGCCTTGCTTAAAAGCTTGGTC
AACGAGGTGTCCATCCGCTTCTTGCCCGACTCCAACGCCGCAGCTTGCGC
TTCGACGGCAATCACTTCATACCCCGCCTGTGCGCTCACTAGGCCAATAC
CATGTCCCATCAGTCCCAAGCCCACAACGCCCACCTTCTTGATGTCGTAT
TTATTCGACGAACCGGCAAAGGACCGACGTTGCTGCTTGTTGGGAGACGG
TTGCAGGGAAGAGGAGGAGACCGAGACGACGGTGGCACGCCGCAGGTGGA
GGGCAGCGGCGGGGGAGAAGTAGGATGGTGAAGCGAAGGAAAGGCATGCG
CGCAAGAACATGGTGCTGTGGTATTTCTTTCCTGTGTACGAGTGGGCGTA
GCGTGCTTCAGTGTGCTTAGACATGGCACTTGAGAGGACGGAGGCCGCAA
GCGGCGCATCATCACAGTTCCCGATTCTTTCTCCTCATGCCTTTTACTCC
GTGCGGGCCTAGCCATGCCCATCACAACCGATTTCTCTCACGCCATCATC
CCTTCACGCCTTACACACAGCCCTTCCACACAGACATAAAGACGCTGTGG
CGAGTGTTCTGGCCTTGTCTTGTCGGTTGCCTTGGGCCGTTGTCAACTCG
CCAAGACTTGTTCTCCGCATCCGCGAGTTCTCCCATCTTGCCTACGAGCC
GTGCCTGATTTCTGCGCCCTTCACCCACGCTATTTCCCCCCCCCCGCACC
GCACAGGCCCGGAAGATTAACGTACCTGCTTGGCGCACCATGACCATACC
TCAAGATGCCCTGGCTGTGCGGGCAGGGTCCAGTGAGATGGAGTTCCTGG
CTGAAGAAACTATGATTGAAATCGAAGCCCGCTTCAACCACCCACCCCTC
AAGCTCATTCGCGGAACCTTCGGACCTTTCTACCCAAATCAACGCGCGCA
AGTTCCTCTATGGCTGGCCTTAACCCTTAAAAAACAAATGAAGTGTCGAG
TGGTGCTGCCGGATTGGTTGGACGGAGAGAGCTTGGCAGAGGTTTTGAAG
GAGGAAAGGGCGCAGGAAGGGACGTTTCAAGACTTGCCGTTTCATTATGT
GGAAATTGCAACGTTGTTGCTCAAGACGGCAGGGGATGAATTTGTGATGC
CCGATAGGATTCGGAGTCTGGTGGAGGATATTGAGAATGTGCGGATGGAG
AAGATAAGACGAGGTTTGCAGGGAATGAGCGATACGGTGTTGAGGGGGAG
GAGTGTCATGAGCACGAAAATGAACCATGTGGGTGCAATGGAGATAACCA
CAGTTAGGAATTTCTTGACACAGGCCATGAACATGTTTTACGTATTGAGC
GGGCAGGAGGTGGTGGGGGAAGGGGGTGGTGGAAGACGGTTAGGGGCGGG
GGGGGCGGCTGCTGTGGCGGCGGCGGCTACGGGGGGAGGCAGGGGAGTGA
GTGGAAATGGGCCACCGAGGAAATTGAGGAGGTTTCGGGAGGATGCGCCC
AGCGAGGGGACGAATTAA

protein sequence of jgi.p|Nanoce1779_2|672533

>mRNA_6664-protein ID=mRNA_6664-protein|Name=jgi.p|Nanoce1779_2|672533|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MTIPQDALAVRAGSSEMEFLAEETMIEIEARFNHPPLKLIRGTFGPFYPN
QRAQVPLWLALTLKKQMKCRVVLPDWLDGESLAEVLKEERAQEGTFQDLP
FHYVEIATLLLKTAGDEFVMPDRIRSLVEDIENVRMEKIRRGLQGMSDTV
LRGRSVMSTKMNHVGAMEITTVRNFLTQAMNMFYVLSGQEVVGEGGGGRR
LGAGGAAAVAAAATGGGRGVSGNGPPRKLRRFREDAPSEGTN*

mRNA from alignment at scaffold_18:387399..390380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6664 ID=mRNA_6664|Name=jgi.p|Nanoce1779_2|672533|organism=Nannochloropsis oceanica|type=mRNA|length=2982bp|location=Sequence derived from alignment at scaffold_18:387399..390380+ (Nannochloropsis oceanica)
CCAGATGCAATGGCCCCATAGGGTGACCCGCGCCCAGCTGCATAGCCACA
TCAATGTCTTCCACGCTTGCGTCCCCTCGCTCCTTCATGAGCATTGCTTG
CACCAGGGCCGGCACCAACAATCTGTTTTGTAGGGGGTTGTGCCGAGGGA
GGGATTGAGAGGGGGTCGGGAGGAGGGAGGGACAGAGGAAGCTTTAAGTC
GCGTGATTGCTTGCTTCTCCTCGCTCCTTCATCAACAGCGCTTGCACTGG
GGCAGGGATGATTTACCTAGAAAGGAGGAAGGGAAAGAGGAAACGAGGGA
GGGAGGAGGGTTGAATCCGCCAGATGACATTTCTTTGACTCAGACTTGGT
TGATGAATAAGAAAAAGTTCACGCAAAAATGTATCACTTAACATTTCCAT
AACAACTTCACTCAAGAAACAAATCTACGTGTTGTGCCGAGAAGAAAGAT
ATCAGGGCGTTGTTGTGCTCGTTGCGCTTTCGTTCTCCCTCCCTCCCTCC
CTCCCTCCCCCTCCTTACCTGTTGACAATAAATCCCGGAGTGTCCTTACA
TGTCACAGCTGTCTTGCCAATTCGTTTCACGTACCCCTGCACGGCTTCAA
ACACTCCCTGCTCCGTCTTGTCGAGCTTTACGATCTCCACCAAGCGCATC
AGTTGCACAGGGTTAAAGAAATGTAATCCCACGAATTTTTCGGGTCGACC
GGAAGGATCAGCAAAATCACTTATTTTTAAAGAAGAGGTATTGCTCCCAA
AGATGGCATTGGGCTTGACCAGACTGCCTAGATGCTTGTAGAAGGGGATT
TTGACGTCTTGGAAGGGAAGGAGGGGAGGGAGGGGGGAAGAGAGAGTTAG
TGAATGACTGCGCGGCACATTTTGCGTTATTTAAGAAAGAGCATGGAATG
GTGCAGCCGGAAAAATGCATGCAAATGCCCCACTTAGCCATCCCAGGACT
CTCCATCCAACTTTCTTCCCACCATGATGTTAGTTTCCTCACCCAAATTC
TCCACGATGGCCTCCACCACCAAATCAACATCTTTCAACGACTTCACGTC
CAAGGAATAAGTTATCCGTCCCTCAACCGCTTTTTTCTCTAATTCTGCCG
CCTCCTTTGTCATCTTTCCCTTCTCCACGGCCTTGCTTAAAAGCTTGGTC
AACGAGGTGTCCATCCGCTTCTTGCCCGACTCCAACGCCGCAGCTTGCGC
TTCGACGGCAATCACTTCATACCCCGCCTGTGCGCTCACTAGGCCAATAC
CATGTCCCATCAGTCCCAAGCCCACAACGCCCACCTTCTTGATGTCGTAT
TTATTCGACGAACCGGCAAAGGACCGACGTTGCTGCTTGTTGGGAGACGG
TTGCAGGGAAGAGGAGGAGACCGAGACGACGGTGGCACGCCGCAGGTGGA
GGGCAGCGGCGGGGGAGAAGTAGGATGGTGAAGCGAAGGAAAGGCATGCG
CGCAAGAACATGGTGCTGTGGTATTTCTTTCCTGTGTACGAGTGGGCGTA
GCGTGCTTCAGTGTGCTTAGACATGGCACTTGAGAGGACGGAGGCCGCAA
GCGGCGCATCATCACAGTTCCCGATTCTTTCTCCTCATGCCTTTTACTCC
GTGCGGGCCTAGCCATGCCCATCACAACCGATTTCTCTCACGCCATCATC
CCTTCACGCCTTACACACAGCCCTTCCACACAGACATAAAGACGCTGTGG
CGAGTGTTCTGGCCTTGTCTTGTCGGTTGCCTTGGGCCGTTGTCAACTCG
CCAAGACTTGTTCTCCGCATCCGCGAGTTCTCCCATCTTGCCTACGAGCC
GTGCCTGATTTCTGCGCCCTTCACCCACGCTATTTCCCCCCCCCCGCACC
GCACAGGCCCGGAAGATTAACGTACCTGCTTGGCGCACCATGACCATACC
TCAAGATGCCCTGGCTGTGCGGGCAGGGTCCAGTGAGATGGAGTTCCTGG
TACGTTTTGCTGACGGCCTGTTGTGAAAGAGTGTCGGTGGGAGTAATGCT
GAGGCCTTGTCTTCCTGCGTTTTATATAACTTGCGAGCTCTATCACGATC
TTAGTGAGGTTATTATGTTTTTTTTTTCCACGTTTGCTCGCACTGAATGA
ACCGGCGATGGGGTTGGGACGGTCTATCCCTGGGATTGAAAGCCAGGCGC
AATGGCCTCGTCCCTCTCTTCCTTTATAGCACCCCGCTGCATTCGCGATC
CGTCTCTTCTTCCTCGTTTACCCAACCAGAAGCAAGTCTAGCCCCCTTCG
TTACATCCATTTCCACTCTTGTCCCCTTATTCCCCTCCTCATCCTCCACC
TTCCACCGTACAGGCTGAAGAAACTATGATTGAAATCGAAGCCCGCTTCA
ACCACCCACCCCTCAAGCTCATTCGCGGAACCTTCGGACCTTTCTACCCA
AATCAACGCGCGCAAGTTCCTCTATGGCTGGCCTTAACCCTTAAAAAACA
AATGAAGTGTCGAGTGGTGCTGCCGGATTGGTTGGACGGAGAGAGCTTGG
CAGAGGTTTTGAAGGAGGAAAGGGCGCAGGAAGGGACGTTTCAAGACTTG
CCGTTTCATTATGTGGAAATTGCAACGTTGTTGCTCAAGACGGCAGGGGA
TGAATTTGTGATGCCCGATAGGATTCGGAGTCTGGTGGAGGATATTGAGA
ATGTGCGGATGGAGAAGATAAGACGAGGTTTGCAGGGAATGAGCGATACG
GTGTTGAGGGGGAGGAGTGTCATGAGCACGAAAATGAACCATGTGGGTGC
AATGGAGATAACCACAGTTAGGAATTTCTTGACACAGGCCATGAACATGT
TTTACGTATTGAGCGGGCAGGAGGTGGTGGGGGAAGGGGGTGGTGGAAGA
CGGTTAGGGGCGGGGGGGGCGGCTGCTGTGGCGGCGGCGGCTACGGGGGG
AGGCAGGGGAGTGAGTGGAAATGGGCCACCGAGGAAATTGAGGAGGTTTC
GGGAGGATGCGCCCAGCGAGGGGACGAATTAA

Coding sequence (CDS) from alignment at scaffold_18:387399..390380+

>mRNA_6664 ID=mRNA_6664|Name=jgi.p|Nanoce1779_2|672533|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_18:387399..390380+ (Nannochloropsis oceanica)
ATGACCATACCTCAAGATGCCCTGGCTGTGCGGGCAGGGTCCAGTGAGAT
GGAGTTCCTGGCTGAAGAAACTATGATTGAAATCGAAGCCCGCTTCAACC
ACCCACCCCTCAAGCTCATTCGCGGAACCTTCGGACCTTTCTACCCAAAT
CAACGCGCGCAAGTTCCTCTATGGCTGGCCTTAACCCTTAAAAAACAAAT
GAAGTGTCGAGTGGTGCTGCCGGATTGGTTGGACGGAGAGAGCTTGGCAG
AGGTTTTGAAGGAGGAAAGGGCGCAGGAAGGGACGTTTCAAGACTTGCCG
TTTCATTATGTGGAAATTGCAACGTTGTTGCTCAAGACGGCAGGGGATGA
ATTTGTGATGCCCGATAGGATTCGGAGTCTGGTGGAGGATATTGAGAATG
TGCGGATGGAGAAGATAAGACGAGGTTTGCAGGGAATGAGCGATACGGTG
TTGAGGGGGAGGAGTGTCATGAGCACGAAAATGAACCATGTGGGTGCAAT
GGAGATAACCACAGTTAGGAATTTCTTGACACAGGCCATGAACATGTTTT
ACGTATTGAGCGGGCAGGAGGTGGTGGGGGAAGGGGGTGGTGGAAGACGG
TTAGGGGCGGGGGGGGCGGCTGCTGTGGCGGCGGCGGCTACGGGGGGAGG
CAGGGGAGTGAGTGGAAATGGGCCACCGAGGAAATTGAGGAGGTTTCGGG
AGGATGCGCCCAGCGAGGGGACGAATTAAATGACCATACCTCAAGATGCC
CTGGCTGTGCGGGCAGGGTCCAGTGAGATGGAGTTCCTGGCTGAAGAAAC
TATGATTGAAATCGAAGCCCGCTTCAACCACCCACCCCTCAAGCTCATTC
GCGGAACCTTCGGACCTTTCTACCCAAATCAACGCGCGCAAGTTCCTCTA
TGGCTGGCCTTAACCCTTAAAAAACAAATGAAGTGTCGAGTGGTGCTGCC
GGATTGGTTGGACGGAGAGAGCTTGGCAGAGGTTTTGAAGGAGGAAAGGG
CGCAGGAAGGGACGTTTCAAGACTTGCCGTTTCATTATGTGGAAATTGCA
ACGTTGTTGCTCAAGACGGCAGGGGATGAATTTGTGATGCCCGATAGGAT
TCGGAGTCTGGTGGAGGATATTGAGAATGTGCGGATGGAGAAGATAAGAC
GAGGTTTGCAGGGAATGAGCGATACGGTGTTGAGGGGGAGGAGTGTCATG
AGCACGAAAATGAACCATGTGGGTGCAATGGAGATAACCACAGTTAGGAA
TTTCTTGACACAGGCCATGAACATGTTTTACGTATTGAGCGGGCAGGAGG
TGGTGGGGGAAGGGGGTGGTGGAAGACGGTTAGGGGCGGGGGGGGCGGCT
GCTGTGGCGGCGGCGGCTACGGGGGGAGGCAGGGGAGTGAGTGGAAATGG
GCCACCGAGGAAATTGAGGAGGTTTCGGGAGGATGCGCCCAGCGAGGGGA
CGAATTAA

Synonyms

Publications