jgi.p|Nanoce1779_2|597637, mRNA_6660 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597637
Unique NamemRNA_6660
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1320
Alignment locationscaffold_18:379957..381276 +

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Properties
Property NameValue
TranscriptId597723
TrackFilteredModels2
ProteinId597637
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:379957..381276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597637gene_6660Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597637mRNA_6660-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6660CDS_6660Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6660 ID=mRNA_6660|Name=jgi.p|Nanoce1779_2|597637|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
TGGAGGGCCGCCGGCGCGCCTCCCATCGAGCAAACGCAAGTCCCAAATTT
ATGCTCCTTTTTGTGCAAGCGTTGTCAATTCACCAGTCCCATCCACCACC
ACGACACATGCGCACAGTCACTCAGCCTTTACGCCGCGCAGACGTGCCTC
TGGGACTCCTGGAAGGCAATGGAGAAGGGCAGAAACGCGGCCACATCGGC
GTCATCGTCTCAGTCACAGCAGGAGGAGGATCGATACCAGCAGCAAGCAA
GCATTCCCGGGCCAACAGCGCCAATATTACCACAAGCACCACCAGCTAAC
GAAACTTGGGATGCTGCATCGGCAATGGCGAGCTTTTCTATTGCGTCCAC
ACCGCAGGAGGAGGCAGAGGAGGGCGGCGACAGGGGCACCATTTCAGCAG
CATTGGACGCATCTCAAGAAGGCACACCACCCAGCACCTTGGACGACAGT
AACACTGCCAAAAGTGTGACGATTTCCTCCCAACCATCCGCTCCCTCAAC
CACCCCAGCTGTGACAAACACAGGCAAGGTCAAAGTGCAGCTGATGGCCG
TCGGCCGCGCCCCTCGTCTAGCCCAAAGCAAGTTCATTGTGCAAGCCAAG
GACTCCTTTCGTGCCTTGTTACCCGTGCTGCGTCGCTTGCTCCAATTGCG
AGAGGACCAGGCGCTGTTCCTATTTGTGAATTCAGCGTTTGCTCCTGCGC
CGGAGGACAAGTTTGGTGACTTGTTTAATTGCTTTGGGAAGACTGGCACA
CTCATTGTCAATTACAGCTTGGACGAGGCGTGGGGATGAGGATGACATTG
AAATGAGAGTGAGAGAATAGAGGCTAGAATAGAGACGTGTAGGATGTAAC
CAATATATTGTACAGTGATGTAATATGGGCGAGTTAGTCCTCAGGGAGAG
ATGAAGGTTGTGTATCAGTGCTCCTGGCGCACTTCTTATCAAAAAGCACG
ACTATTCTTATGGGGAGTAAACACCATTCGAGTCGCTGAAGTTTCTTTAA
AATAAAGCCTTTCCCTCTCGCAACATAATTCAGTCTGGCTTCTGATGGCA
TGGCCTTTCTCGATTGTAAGATGAACCGGCTGACATACAAATTATTGTTC
GCTCTGCGGACGATCAATTTCATTGGGAGGCAACAAAATTCTAAATAATC
ATGTCCACGGGCCCGCCGTGCTTGTAAGAAAAAAGGGGGCAATGCAGTGC
AAGCCTGAACATAAGATAAGAAGTGGGTGGTTGCAGTAGGAGAGGATTGT
GCAGCGGGTATAACAGTCCATTCGCCCATCTCTCTCAACAAAGGAAAAAC
AAGATGTACCCGTGGCTGTG
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protein sequence of jgi.p|Nanoce1779_2|597637

>mRNA_6660-protein ID=mRNA_6660-protein|Name=jgi.p|Nanoce1779_2|597637|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MEKGRNAATSASSSQSQQEEDRYQQQASIPGPTAPILPQAPPANETWDAA
SAMASFSIASTPQEEAEEGGDRGTISAALDASQEGTPPSTLDDSNTAKSV
TISSQPSAPSTTPAVTNTGKVKVQLMAVGRAPRLAQSKFIVQAKDSFRAL
LPVLRRLLQLREDQALFLFVNSAFAPAPEDKFGDLFNCFGKTGTLIVNYS
LDEAWG*
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mRNA from alignment at scaffold_18:379957..381276+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6660 ID=mRNA_6660|Name=jgi.p|Nanoce1779_2|597637|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp|location=Sequence derived from alignment at scaffold_18:379957..381276+ (Nannochloropsis oceanica)
TGGAGGGCCGCCGGCGCGCCTCCCATCGAGCAAACGCAAGTCCCAAATTT
ATGCTCCTTTTTGTGCAAGCGTTGTCAATTCACCAGTCCCATCCACCACC
ACGACACATGCGCACAGTCACTCAGCCTTTACGCCGCGCAGACGTGCCTC
TGGGACTCCTGGAAGGCAATGGAGAAGGGCAGAAACGCGGCCACATCGGC
GTCATCGTCTCAGTCACAGCAGGAGGAGGATCGATACCAGCAGCAAGCAA
GCATTCCCGGGCCAACAGCGCCAATATTACCACAAGCACCACCAGCTAAC
GAAACTTGGGATGCTGCATCGGCAATGGCGAGCTTTTCTATTGCGTCCAC
ACCGCAGGAGGAGGCAGAGGAGGGCGGCGACAGGGGCACCATTTCAGCAG
CATTGGACGCATCTCAAGAAGGCACACCACCCAGCACCTTGGACGACAGT
AACACTGCCAAAAGTGTGACGATTTCCTCCCAACCATCCGCTCCCTCAAC
CACCCCAGCTGTGACAAACACAGGCAAGGTCAAAGTGCAGCTGATGGCCG
TCGGCCGCGCCCCTCGTCTAGCCCAAAGCAAGTTCATTGTGCAAGCCAAG
GACTCCTTTCGTGCCTTGTTACCCGTGCTGCGTCGCTTGCTCCAATTGCG
AGAGGACCAGGCGCTGTTCCTATTTGTGAATTCAGCGTTTGCTCCTGCGC
CGGAGGACAAGTTTGGTGACTTGTTTAATTGCTTTGGGAAGACTGGCACA
CTCATTGTCAATTACAGCTTGGACGAGGCGTGGGGATGAGGATGACATTG
AAATGAGAGTGAGAGAATAGAGGCTAGAATAGAGACGTGTAGGATGTAAC
CAATATATTGTACAGTGATGTAATATGGGCGAGTTAGTCCTCAGGGAGAG
ATGAAGGTTGTGTATCAGTGCTCCTGGCGCACTTCTTATCAAAAAGCACG
ACTATTCTTATGGGGAGTAAACACCATTCGAGTCGCTGAAGTTTCTTTAA
AATAAAGCCTTTCCCTCTCGCAACATAATTCAGTCTGGCTTCTGATGGCA
TGGCCTTTCTCGATTGTAAGATGAACCGGCTGACATACAAATTATTGTTC
GCTCTGCGGACGATCAATTTCATTGGGAGGCAACAAAATTCTAAATAATC
ATGTCCACGGGCCCGCCGTGCTTGTAAGAAAAAAGGGGGCAATGCAGTGC
AAGCCTGAACATAAGATAAGAAGTGGGTGGTTGCAGTAGGAGAGGATTGT
GCAGCGGGTATAACAGTCCATTCGCCCATCTCTCTCAACAAAGGAAAAAC
AAGATGTACCCGTGGCTGTG
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Coding sequence (CDS) from alignment at scaffold_18:379957..381276+

>mRNA_6660 ID=mRNA_6660|Name=jgi.p|Nanoce1779_2|597637|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_18:379957..381276+ (Nannochloropsis oceanica)
ATGGAGAAGGGCAGAAACGCGGCCACATCGGCGTCATCGTCTCAGTCACA
GCAGGAGGAGGATCGATACCAGCAGCAAGCAAGCATTCCCGGGCCAACAG
CGCCAATATTACCACAAGCACCACCAGCTAACGAAACTTGGGATGCTGCA
TCGGCAATGGCGAGCTTTTCTATTGCGTCCACACCGCAGGAGGAGGCAGA
GGAGGGCGGCGACAGGGGCACCATTTCAGCAGCATTGGACGCATCTCAAG
AAGGCACACCACCCAGCACCTTGGACGACAGTAACACTGCCAAAAGTGTG
ACGATTTCCTCCCAACCATCCGCTCCCTCAACCACCCCAGCTGTGACAAA
CACAGGCAAGGTCAAAGTGCAGCTGATGGCCGTCGGCCGCGCCCCTCGTC
TAGCCCAAAGCAAGTTCATTGTGCAAGCCAAGGACTCCTTTCGTGCCTTG
TTACCCGTGCTGCGTCGCTTGCTCCAATTGCGAGAGGACCAGGCGCTGTT
CCTATTTGTGAATTCAGCGTTTGCTCCTGCGCCGGAGGACAAGTTTGGTG
ACTTGTTTAATTGCTTTGGGAAGACTGGCACACTCATTGTCAATTACAGC
TTGGACGAGGCGTGGGGATGA
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Synonyms
Publications