jgi.p|Nanoce1779_2|652729, mRNA_666 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|652729
Unique NamemRNA_666
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1471
Alignment locationscaffold_2:144565..146069 -

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Properties
Property NameValue
TranscriptId652815
TrackFilteredModels2
ProteinId652729
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:144565..146069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652729gene_666Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652729mRNA_666-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_666CDS_666Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_666 ID=mRNA_666|Name=jgi.p|Nanoce1779_2|652729|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp
ATGGGAATTATTGGCGGCCCCTATACCACGTCAGTTGTTGCCTTCAAGGG
CCAACGATCTTACATGGAAGATGATTTTTTCATTAGTAAAGACGGGAGCT
TTAGTGGGGTCTATGACGGGCATGGGGGGGCGGCCGTGTCAAAATATTTG
CGGCAGAATCTGAATGCCCAGTTCTTGACGGCCTTGCCAGACGAGGACAC
GACCAAATTGAGCGATGAGGTGGTTGCCGAAGCGCTGACGCAAGCCTTTC
GCGTGGTGGATGACGCGGTCCTTAAAGTCAGGCATTGGTCGTACATGGGC
TCCACAGCTGTGGCCGTTGTGATTCATGCCCAGGGTCAGGGGGAAGGACA
GCCGGCGAAACGAACGTTAATCAGTGCCAATGTTGGTGATTCCCGCGCGG
TGTTGAGTAGGAGAGGGAAGGCAATGGACCTGACAGAGGATCATAAGCCG
AACAAACCCAGTGAATTGGAGAGGGTGAAGGCGTTGGGGGGGACGGTAAG
GTGGTATGGATTATTGGAGCAGGATGGGGCGCCGATGGAGGGCATGGGCG
TGTACCGGATAAATGGGAATCTGGCGGTGGCACGGGCGTTTGGAGACAGG
AGTGAGAGGCCATTTGTGTCAAGTGAGGTGGAGGTGAAGATGGTGCCGGT
TGAAGACGGGGATGAGTTTGTGATTCTGGCGACGGATGGGCTGTGGGATG
TGATGACTTCGGAAGATGCCGTGGCGTTTGTGCATTCAGTGATGAGTGCG
AGTGTAGGAGCATTGACTGAGGGAGGAGGGGAGGGAGGGGGAGGACGTGT
GGCAGACATGAAAATTTTTGATTGGACGAAGCAGCATGCGAATGACCGGG
GGATTATTCGAGCAGCGATGATGGCGAGGAAGAAGAAAATGGCCAGGTAC
TTGAGTGAGGAGGCCTTCAGGAGGGGAACATCTGACAATGTGACTGTGGT
AGTGGTATGGTTCTGAAGTCTGAGTTGAAAGAAATGTGGGACGGAGAGAA
GGGGGATAAGTAGAATAAAAGAGAAGGGAAATGCAGGGGAAAATCACACA
GCAGATGGGTAGTTACACCAGCGGCTGGTGGAGAGAAGAACAAATGCGTT
GGGTTAGGGTTACCTGGATGCGTAAAGCCGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAGCAACAGTAGAAGCCGAGGAAATCTCAAGCAGCAATAATG
GTAGGATGGAAATTAAGCGCGAGAAGAAGGCGGAGGCACGCTCCGTCGCA
GCGGCAGGAAAGACAGTGGAGAAGCGCGGACGAAGCTTGGATACGGCCAT
CTATGGCTCATGTGAGATGTAAACAAAACAGGGAGATGGATCTCCCCTAC
GCTTTGGAATTGGACCAGCCAGCCCACAAAAGGAGAAATCCACGACAACC
CCAAATAGCACATCACATATT
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protein sequence of jgi.p|Nanoce1779_2|652729

>mRNA_666-protein ID=mRNA_666-protein|Name=jgi.p|Nanoce1779_2|652729|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MGIIGGPYTTSVVAFKGQRSYMEDDFFISKDGSFSGVYDGHGGAAVSKYL
RQNLNAQFLTALPDEDTTKLSDEVVAEALTQAFRVVDDAVLKVRHWSYMG
STAVAVVIHAQGQGEGQPAKRTLISANVGDSRAVLSRRGKAMDLTEDHKP
NKPSELERVKALGGTVRWYGLLEQDGAPMEGMGVYRINGNLAVARAFGDR
SERPFVSSEVEVKMVPVEDGDEFVILATDGLWDVMTSEDAVAFVHSVMSA
SVGALTEGGGEGGGGRVADMKIFDWTKQHANDRGIIRAAMMARKKKMARY
LSEEAFRRGTSDNVTVVVVWF*
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mRNA from alignment at scaffold_2:144565..146069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_666 ID=mRNA_666|Name=jgi.p|Nanoce1779_2|652729|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp|location=Sequence derived from alignment at scaffold_2:144565..146069- (Nannochloropsis oceanica)
ATGGGAATTATTGGCGGCCCCTATACCACGTCAGTTGTTGCCTTCAAGGG
CCAACGATCTTACATGGAAGATGATTTTTTCATTAGTAAAGACGGGAGCT
TTAGTGGGGTCTATGACGGGCATGGGGGGGCGGCCGTGTCAAAATATTTG
CGGCAGAATCTGAATGCCCAGTTCTTGACGGCCTTGCCAGACGAGGACAC
GACCAAATTGAGCGATGAGGTGGTTGCCGAAGCGCTGACGCAAGCCTTTC
GCGTGGTGGATGACGCGGTCCTTAAAGTCAGGCATTGGTCGTACATGGGC
TCCACAGCTGTGGCCGTTGTGATTCATGCCCAGGGTCAGGGGGAAGGACA
GCCGGCGAAACGAACGTTAATCAGTGCCAATGTTGGTGATTCCCGCGCGG
TGTTGAGTAGGAGAGGGAAGGCAATGGACCTGACAGAGGATCATAAGCCG
AACAAACCCAGTGAATTGGAGAGGGTGAAGGCGTTGGGGGGGACGGTAAG
GTGGTATGGATTATTGGAGCAGGATGGGGCGCCGATGGAGGGCATGGGCG
TGTACCGGATAAATGGGAATCTGGCGGTGGCACGGGCGTTTGGAGACAGG
AGTGAGAGGCCATTTGTGTCAAGTGAGGTGGAGGTGAAGATGGTGCCGGT
TGAAGACGGGGATGAGTTTGTGATTCTGGCGACGGATGGGCTGTGGGATG
TGATGACTTCGGAAGATGCCGTGGCGTTTGTGCATTCAGTGATGAGTGCG
AGTGTAGGAGCATTGACTGAGGGAGGAGGGGAGGGAGGGGGAGGAGTAGG
AGGGGGGGGGGGGGGAGCCGGCTGGGCAGCGTGTGGCAGACATGAAAATT
TTTGATTGGACGAAGCAGCATGCGAATGACCGGGGGATTATTCGAGCAGC
GATGATGGCGAGGAAGAAGAAAATGGCCAGGTACTTGAGTGAGGAGGCCT
TCAGGAGGGGAACATCTGACAATGTGACTGTGGTAGTGGTATGGTTCTGA
AGTCTGAGTTGAAAGAAATGTGGGACGGAGAGAAGGGGGATAAGTAGAAT
AAAAGAGAAGGGAAATGCAGGGGAAAATCACACAGCAGATGGGTAGTTAC
ACCAGCGGCTGGTGGAGAGAAGAACAAATGCGTTGGGTTAGGGTTACCTG
GATGCGTAAAGCCGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACA
GTAGAAGCCGAGGAAATCTCAAGCAGCAATAATGGTAGGATGGAAATTAA
GCGCGAGAAGAAGGCGGAGGCACGCTCCGTCGCAGCGGCAGGAAAGACAG
TGGAGAAGCGCGGACGAAGCTTGGATACGGCCATCTATGGCTCATGTGAG
ATGTAAACAAAACAGGGAGATGGATCTCCCCTACGCTTTGGAATTGGACC
AGCCAGCCCACAAAAGGAGAAATCCACGACAACCCCAAATAGCACATCAC
ATATT
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Coding sequence (CDS) from alignment at scaffold_2:144565..146069-

>mRNA_666 ID=mRNA_666|Name=jgi.p|Nanoce1779_2|652729|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_2:144565..146069- (Nannochloropsis oceanica)
CGTGTGGCAGACATGAAAATTTTTGATTGGACGAAGCAGCATGCGAATGA
CCGGGGGATTATTCGAGCAGCGATGATGGCGAGGAAGAAGAAAATGGCCA
GGTACTTGAGTGAGGAGGCCTTCAGGAGGGGAACATCTGACAATGTGACT
GTGGTAGTGGTATGGTTCTGAATGGGAATTATTGGCGGCCCCTATACCAC
GTCAGTTGTTGCCTTCAAGGGCCAACGATCTTACATGGAAGATGATTTTT
TCATTAGTAAAGACGGGAGCTTTAGTGGGGTCTATGACGGGCATGGGGGG
GCGGCCGTGTCAAAATATTTGCGGCAGAATCTGAATGCCCAGTTCTTGAC
GGCCTTGCCAGACGAGGACACGACCAAATTGAGCGATGAGGTGGTTGCCG
AAGCGCTGACGCAAGCCTTTCGCGTGGTGGATGACGCGGTCCTTAAAGTC
AGGCATTGGTCGTACATGGGCTCCACAGCTGTGGCCGTTGTGATTCATGC
CCAGGGTCAGGGGGAAGGACAGCCGGCGAAACGAACGTTAATCAGTGCCA
ATGTTGGTGATTCCCGCGCGGTGTTGAGTAGGAGAGGGAAGGCAATGGAC
CTGACAGAGGATCATAAGCCGAACAAACCCAGTGAATTGGAGAGGGTGAA
GGCGTTGGGGGGGACGGTAAGGTGGTATGGATTATTGGAGCAGGATGGGG
CGCCGATGGAGGGCATGGGCGTGTACCGGATAAATGGGAATCTGGCGGTG
GCACGGGCGTTTGGAGACAGGAGTGAGAGGCCATTTGTGTCAAGTGAGGT
GGAGGTGAAGATGGTGCCGGTTGAAGACGGGGATGAGTTTGTGATTCTGG
CGACGGATGGGCTGTGGGATGTGATGACTTCGGAAGATGCCGTGGCGTTT
GTGCATTCAGTGATGAGTGCGAGTGTAGGAGCATTGACTGAGGGAGGAGG
GGAGGGAGGGGGAGGACGTGTGGCAGACATGAAAATTTTTGATTGGACGA
AGCAGCATGCGAATGACCGGGGGATTATTCGAGCAGCGATGATGGCGAGG
AAGAAGAAAATGGCCAGGTACTTGAGTGAGGAGGCCTTCAGGAGGGGAAC
ATCTGACAATGTGACTGTGGTAGTGGTATGGTTCTGAATGGGAATTATTG
GCGGCCCCTATACCACGTCAGTTGTTGCCTTCAAGGGCCAACGATCTTAC
ATGGAAGATGATTTTTTCATTAGTAAAGACGGGAGCTTTAGTGGGGTCTA
TGACGGGCATGGGGGGGCGGCCGTGTCAAAATATTTGCGGCAGAATCTGA
ATGCCCAGTTCTTGACGGCCTTGCCAGACGAGGACACGACCAAATTGAGC
GATGAGGTGGTTGCCGAAGCGCTGACGCAAGCCTTTCGCGTGGTGGATGA
CGCGGTCCTTAAAGTCAGGCATTGGTCGTACATGGGCTCCACAGCTGTGG
CCGTTGTGATTCATGCCCAGGGTCAGGGGGAAGGACAGCCGGCGAAACGA
ACGTTAATCAGTGCCAATGTTGGTGATTCCCGCGCGGTGTTGAGTAGGAG
AGGGAAGGCAATGGACCTGACAGAGGATCATAAGCCGAACAAACCCAGTG
AATTGGAGAGGGTGAAGGCGTTGGGGGGGACGGTAAGGTGGTATGGATTA
TTGGAGCAGGATGGGGCGCCGATGGAGGGCATGGGCGTGTACCGGATAAA
TGGGAATCTGGCGGTGGCACGGGCGTTTGGAGACAGGAGTGAGAGGCCAT
TTGTGTCAAGTGAGGTGGAGGTGAAGATGGTGCCGGTTGAAGACGGGGAT
GAGTTTGTGATTCTGGCGACGGATGGGCTGTGGGATGTGATGACTTCGGA
AGATGCCGTGGCGTTTGTGCATTCAGTGATGAGTGCGAGTGTAGGAGCAT
TGACTGAGGGAGGAGGGGAGGGAGGGGGAGGA
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Synonyms
Publications