jgi.p|Nanoce1779_2|597629, mRNA_6657 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597629
Unique NamemRNA_6657
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1113
Alignment locationscaffold_18:374049..375161 -

Link to JBrowse

Properties
Property NameValue
TranscriptId597715
TrackFilteredModels2
ProteinId597629
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:374049..375161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597629gene_6657Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597629mRNA_6657-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6657CDS_6657Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6657 ID=mRNA_6657|Name=jgi.p|Nanoce1779_2|597629|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGCAGCAGTAG
TAGCAGTAGTAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
AAGAGCACGCCTCCACGACATCAACGTCGACGACGAGTGGTGATGACGAC
TTTGCTGCGGCAAACCCAGCTACCATGGTAAACCCCGAGGTGTTGAGCGG
GAGCGGACATAATTTTACGCCCTTGCCCGAAATCCTATTCGGCCGGAGCT
ACCTAGAAATCAAACATGCCGCTACGGCTGGAGGGGATGAGGAAGGGGGA
GGAAGTGGGGCAGGGCCAGGACAATCAACGTCCTCAACGATAGATTTCTG
CTTGCGTTTCAACACCACGGGCGCGCTCATCTCTTGGGCCCGACGACATG
TGGATGGGGCGGGAGGGACACCGTTGAGGGTTGTAACGGTGCCTGAGGCC
AGTCGGTGGGCGGCGGGGAATCTGGCCGTGGGCTTAAAGCAGGTGCGGTA
TGATTGGGTGTTTGGAACTGATTATGAAGGGGAGCTGTTTAGCAATGTAC
AGGGAGGGGAGATGGAGGGAGATCCATGTGATACGTGCATGGATGAGCGG
GAGAGTGCAAGGGTTGGCGTGGAGTGGGAGTCGGCGGATGCAAGTGTGAT
AGACCGAGAGTTGCTGAGTGATCGGAGGCAGCCTATTTTGTTCTATGATG
ACATCACCTTGTATGAGGACGAGTTGCATGATCATGGCATGGTGTTACTC
AATGCCAAGATTCGGGTGATGCCCACATGTTGGTTTGTCTTGTTGCGGTA
CTTCCTGAGGGTGGATAGAGTTTTGATCCGCGTGGAGGACACGAGGTACT
TCCATCGGCTCGGGCAAGAATGGGTGGGCAAGGAGCGGAGTCGGAAGGAG
CTGACATTTGCACAGTTGGGGAAAGCGGGTTTGCCGATGGAGACGTCGGA
ATACCGGGATGTGAGCAAAGTGGCGATGATGTTGGAGTGCGCTGGAACGC
CTGCCACTGTGGTGCATTCGCGGTTGGTTTTGTCGGGGGCTCCGTCCTGA
GCGGCCAAGGGATGGACGGATGGAGGGGATAGGGGAAGAAGGGGGTAGAG
GAGGATGTATCAG
back to top

protein sequence of jgi.p|Nanoce1779_2|597629

>mRNA_6657-protein ID=mRNA_6657-protein|Name=jgi.p|Nanoce1779_2|597629|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MVNPEVLSGSGHNFTPLPEILFGRSYLEIKHAATAGGDEEGGGSGAGPGQ
STSSTIDFCLRFNTTGALISWARRHVDGAGGTPLRVVTVPEASRWAAGNL
AVGLKQVRYDWVFGTDYEGELFSNVQGGEMEGDPCDTCMDERESARVGVE
WESADASVIDRELLSDRRQPILFYDDITLYEDELHDHGMVLLNAKIRVMP
TCWFVLLRYFLRVDRVLIRVEDTRYFHRLGQEWVGKERSRKELTFAQLGK
AGLPMETSEYRDVSKVAMMLECAGTPATVVHSRLVLSGAPS*
back to top

mRNA from alignment at scaffold_18:374049..375161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6657 ID=mRNA_6657|Name=jgi.p|Nanoce1779_2|597629|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp|location=Sequence derived from alignment at scaffold_18:374049..375161- (Nannochloropsis oceanica)
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGCAGCAGTAG
TAGCAGTAGTAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
AAGAGCACGCCTCCACGACATCAACGTCGACGACGAGTGGTGATGACGAC
TTTGCTGCGGCAAACCCAGCTACCATGGTAAACCCCGAGGTGTTGAGCGG
GAGCGGACATAATTTTACGCCCTTGCCCGAAATCCTATTCGGCCGGAGCT
ACCTAGAAATCAAACATGCCGCTACGGCTGGAGGGGATGAGGAAGGGGGA
GGAAGTGGGGCAGGGCCAGGACAATCAACGTCCTCAACGATAGATTTCTG
CTTGCGTTTCAACACCACGGGCGCGCTCATCTCTTGGGCCCGACGACATG
TGGATGGGGCGGGAGGGACACCGTTGAGGGTTGTAACGGTGCCTGAGGCC
AGTCGGTGGGCGGCGGGGAATCTGGCCGTGGGCTTAAAGCAGGTGCGGTA
TGATTGGGTGTTTGGAACTGATTATGAAGGGGAGCTGTTTAGCAATGTAC
AGGGAGGGGAGATGGAGGGAGATCCATGTGATACGTGCATGGATGAGCGG
GAGAGTGCAAGGGTTGGCGTGGAGTGGGAGTCGGCGGATGCAAGTGTGAT
AGACCGAGAGTTGCTGAGTGATCGGAGGCAGCCTATTTTGTTCTATGATG
ACATCACCTTGTATGAGGACGAGTTGCATGATCATGGCATGGTGTTACTC
AATGCCAAGATTCGGGTGATGCCCACATGTTGGTTTGTCTTGTTGCGGTA
CTTCCTGAGGGTGGATAGAGTTTTGATCCGCGTGGAGGACACGAGGTACT
TCCATCGGCTCGGGCAAGAATGGGTGGGCAAGGAGCGGAGTCGGAAGGAG
CTGACATTTGCACAGTTGGGGAAAGCGGGTTTGCCGATGGAGACGTCGGA
ATACCGGGATGTGAGCAAAGTGGCGATGATGTTGGAGTGCGCTGGAACGC
CTGCCACTGTGGTGCATTCGCGGTTGGTTTTGTCGGGGGCTCCGTCCTGA
GCGGCCAAGGGATGGACGGATGGAGGGGATAGGGGAAGAAGGGGGTAGAG
GAGGATGTATCAG
back to top

Coding sequence (CDS) from alignment at scaffold_18:374049..375161-

>mRNA_6657 ID=mRNA_6657|Name=jgi.p|Nanoce1779_2|597629|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_18:374049..375161- (Nannochloropsis oceanica)
ATGGTAAACCCCGAGGTGTTGAGCGGGAGCGGACATAATTTTACGCCCTT
GCCCGAAATCCTATTCGGCCGGAGCTACCTAGAAATCAAACATGCCGCTA
CGGCTGGAGGGGATGAGGAAGGGGGAGGAAGTGGGGCAGGGCCAGGACAA
TCAACGTCCTCAACGATAGATTTCTGCTTGCGTTTCAACACCACGGGCGC
GCTCATCTCTTGGGCCCGACGACATGTGGATGGGGCGGGAGGGACACCGT
TGAGGGTTGTAACGGTGCCTGAGGCCAGTCGGTGGGCGGCGGGGAATCTG
GCCGTGGGCTTAAAGCAGGTGCGGTATGATTGGGTGTTTGGAACTGATTA
TGAAGGGGAGCTGTTTAGCAATGTACAGGGAGGGGAGATGGAGGGAGATC
CATGTGATACGTGCATGGATGAGCGGGAGAGTGCAAGGGTTGGCGTGGAG
TGGGAGTCGGCGGATGCAAGTGTGATAGACCGAGAGTTGCTGAGTGATCG
GAGGCAGCCTATTTTGTTCTATGATGACATCACCTTGTATGAGGACGAGT
TGCATGATCATGGCATGGTGTTACTCAATGCCAAGATTCGGGTGATGCCC
ACATGTTGGTTTGTCTTGTTGCGGTACTTCCTGAGGGTGGATAGAGTTTT
GATCCGCGTGGAGGACACGAGGTACTTCCATCGGCTCGGGCAAGAATGGG
TGGGCAAGGAGCGGAGTCGGAAGGAGCTGACATTTGCACAGTTGGGGAAA
GCGGGTTTGCCGATGGAGACGTCGGAATACCGGGATGTGAGCAAAGTGGC
GATGATGTTGGAGTGCGCTGGAACGCCTGCCACTGTGGTGCATTCGCGGT
TGGTTTTGTCGGGGGCTCCGTCCTGA
back to top
Synonyms
Publications