jgi.p|Nanoce1779_2|597624, mRNA_6656 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597624
Unique NamemRNA_6656
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1766
Alignment locationscaffold_18:371598..373363 -

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Properties
Property NameValue
TranscriptId597710
TrackFilteredModels2
ProteinId597624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:371598..373363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597624gene_6656Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597624mRNA_6656-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6656CDS_6656Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6656 ID=mRNA_6656|Name=jgi.p|Nanoce1779_2|597624|organism=Nannochloropsis oceanica|type=mRNA|length=1766bp
CAGCGCGCATTGTCCCTCTCCTCCTCCTCCTCATCATCATCTTCTTCTTC
TTCTTCTTCTTCTTTTTCTTCTTCATCATCTTCTTCTTCTCCTCCTCCTC
CTCGTCTTCCTTTATCCTCCTTCTCTCCTTCCCTTGCCACCACTTCCTCA
TTATCATCGTCGAAAGGTCACAATCAAAATCATAAAAATAACCCGTTCTT
CAACTCCCTTCCGCTTGCCGCGGCAGCTGCTACTCTTTTGGCCCTCACTA
CTGTTGCAATCACCCAACAAGATGCCGGTACATTCTATTTCCGGCCCCCC
ACCCGCCCACATCGCGTGATGTACTCCCTGTCGACCTACCCGGGGAACGA
ATACATTGAGGATCGACATGAGATTAGGGAGATTATGGGAGGAGATGTTT
TTTGTGGAGTCTTTGATGGTCATGGTGGGTGGCAAGTGGCCGAGTACGCC
TCAGTACATTTGAGCAAGAATCTGGAGATAGAACTAAGTAATATGGGGCA
TCGGTCAGAGCCGGAAGAGGTGAGTAAAGCATTAATCCGAGCGTTTGAGC
GGACTGACCGGGGAGTGATCCACAAGGTGCACCACGCTTTTGAAATCGGC
TTGGGGAACGTGGCCAAAGTGGGGGCTTGTGCTCTCACACTCCTGATTAA
GAACCAGCATGTCTTTGTGGCCAACGCGGGGGACTGCAGGGCGGTCTTGG
GGAAGCGACAGTTGCCGGCTACTGTCGGTGGGGCCCGAAGAACAACTAAA
GGAGCAACAACTGCAAAAGCAGCAGTAACAGCAACGGCAACAGCAGCAGC
GGCAGCAGGACAATATGTAGCTGTGGCGTTGAGCCAAGACCACAATGCCA
AGCTCCCCAAGGAGGCATTGGCCCTCCAGCAAGCCCACCCAGGCGAGCCC
GACATTGTCAAGTGCAAGCATGCCAACGCCTGCTACGTCAAAGGTCGTTT
GCAACCCACCCGAGCCCTCGGTGACGCCTACCTCAAGTACTCCGAGTTCA
ACGGTCGTCCCAATCGTTCCGACTCCAGCGCTGGCCGGTATATTCCCCCT
CCGTACACCCCTCCCTACATCACGGCTACCCCGGAAGTGCAGGTGTTTGA
AGGGGTTCTGGACGACCCAACGGCGGAATTTATTATCGTTGCCACAGATG
GTGTGTGGGATTTGTTGACCAATGAAGAGGCTGTGCGCTTTGTGGGACAG
ACGATTGCGAAGGGTGATGGCATGCATGTGAGCCAGCAGTTGATTGCGCA
TGCCTTGGAGGCACGGGCGAAGGATCTGGGGATGACGGTAGAGGACCTTC
GGGTCCTGCCTCCAGGGAAGGCTCGGCGATCCAAGCACGATGATATGACA
GCGCTGGTGATTATGCTGCAAGGCTCAGCCGCGGGTGTAGCGCCAGAGAG
CGCAGCGGCAAACCCGCAGGATGGCAAGGTTGATACGAGCATTGATCCGA
CTGTACCGCCAGGAGAGTGAGGGGTAATGAAGAAAGAGGCGATCTTGGGG
GTCAAGATAATGGGGTACGGTAGTTTGAAATCAAATGGGAGTGAATTGAG
AAAGAATGAAGGAAAAGTCACTCGGGTCATCGTTGTGGAACGTAAGAAAA
ACGTTCCCGGAACATGGGTGCTTCAACTCAGTTGCCCCAAAAAAGGAGCC
GCGGCTGCAAAGTTTTGAGCCCGTTATTAATCGATATGCTCACTACAGAT
GGAAATAGGAAAGATGCGCACTCTTGACGAGGAGGTGGCAGATGGTAAGA
ATAGCCAGGCGCAAGA
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protein sequence of jgi.p|Nanoce1779_2|597624

>mRNA_6656-protein ID=mRNA_6656-protein|Name=jgi.p|Nanoce1779_2|597624|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MYSLSTYPGNEYIEDRHEIREIMGGDVFCGVFDGHGGWQVAEYASVHLSK
NLEIELSNMGHRSEPEEVSKALIRAFERTDRGVIHKVHHAFEIGLGNVAK
VGACALTLLIKNQHVFVANAGDCRAVLGKRQLPATVGGARRTTKGATTAK
AAVTATATAAAAAGQYVAVALSQDHNAKLPKEALALQQAHPGEPDIVKCK
HANACYVKGRLQPTRALGDAYLKYSEFNGRPNRSDSSAGRYIPPPYTPPY
ITATPEVQVFEGVLDDPTAEFIIVATDGVWDLLTNEEAVRFVGQTIAKGD
GMHVSQQLIAHALEARAKDLGMTVEDLRVLPPGKARRSKHDDMTALVIML
QGSAAGVAPESAAANPQDGKVDTSIDPTVPPGE*
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mRNA from alignment at scaffold_18:371598..373363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6656 ID=mRNA_6656|Name=jgi.p|Nanoce1779_2|597624|organism=Nannochloropsis oceanica|type=mRNA|length=1766bp|location=Sequence derived from alignment at scaffold_18:371598..373363- (Nannochloropsis oceanica)
CAGCGCGCATTGTCCCTCTCCTCCTCCTCCTCATCATCATCTTCTTCTTC
TTCTTCTTCTTCTTTTTCTTCTTCATCATCTTCTTCTTCTCCTCCTCCTC
CTCGTCTTCCTTTATCCTCCTTCTCTCCTTCCCTTGCCACCACTTCCTCA
TTATCATCGTCGAAAGGTCACAATCAAAATCATAAAAATAACCCGTTCTT
CAACTCCCTTCCGCTTGCCGCGGCAGCTGCTACTCTTTTGGCCCTCACTA
CTGTTGCAATCACCCAACAAGATGCCGGTACATTCTATTTCCGGCCCCCC
ACCCGCCCACATCGCGTGATGTACTCCCTGTCGACCTACCCGGGGAACGA
ATACATTGAGGATCGACATGAGATTAGGGAGATTATGGGAGGAGATGTTT
TTTGTGGAGTCTTTGATGGTCATGGTGGGTGGCAAGTGGCCGAGTACGCC
TCAGTACATTTGAGCAAGAATCTGGAGATAGAACTAAGTAATATGGGGCA
TCGGTCAGAGCCGGAAGAGGTGAGTAAAGCATTAATCCGAGCGTTTGAGC
GGACTGACCGGGGAGTGATCCACAAGGTGCACCACGCTTTTGAAATCGGC
TTGGGGAACGTGGCCAAAGTGGGGGCTTGTGCTCTCACACTCCTGATTAA
GAACCAGCATGTCTTTGTGGCCAACGCGGGGGACTGCAGGGCGGTCTTGG
GGAAGCGACAGTTGCCGGCTACTGTCGGTGGGGCCCGAAGAACAACTAAA
GGAGCAACAACTGCAAAAGCAGCAGTAACAGCAACGGCAACAGCAGCAGC
GGCAGCAGGACAATATGTAGCTGTGGCGTTGAGCCAAGACCACAATGCCA
AGCTCCCCAAGGAGGCATTGGCCCTCCAGCAAGCCCACCCAGGCGAGCCC
GACATTGTCAAGTGCAAGCATGCCAACGCCTGCTACGTCAAAGGTCGTTT
GCAACCCACCCGAGCCCTCGGTGACGCCTACCTCAAGTACTCCGAGTTCA
ACGGTCGTCCCAATCGTTCCGACTCCAGCGCTGGCCGGTATATTCCCCCT
CCGTACACCCCTCCCTACATCACGGCTACCCCGGAAGTGCAGGTGTTTGA
AGGGGTTCTGGACGACCCAACGGCGGAATTTATTATCGTTGCCACAGATG
GTGTGTGGGATTTGTTGACCAATGAAGAGGCTGTGCGCTTTGTGGGACAG
ACGATTGCGAAGGGTGATGGCATGCATGTGAGCCAGCAGTTGATTGCGCA
TGCCTTGGAGGCACGGGCGAAGGATCTGGGGATGACGGTAGAGGACCTTC
GGGTCCTGCCTCCAGGGAAGGCTCGGCGATCCAAGCACGATGATATGACA
GCGCTGGTGATTATGCTGCAAGGCTCAGCCGCGGGTGTAGCGCCAGAGAG
CGCAGCGGCAAACCCGCAGGATGGCAAGGTTGATACGAGCATTGATCCGA
CTGTACCGCCAGGAGAGTGAGGGGTAATGAAGAAAGAGGCGATCTTGGGG
GTCAAGATAATGGGGTACGGTAGTTTGAAATCAAATGGGAGTGAATTGAG
AAAGAATGAAGGAAAAGTCACTCGGGTCATCGTTGTGGAACGTAAGAAAA
ACGTTCCCGGAACATGGGTGCTTCAACTCAGTTGCCCCAAAAAAGGAGCC
GCGGCTGCAAAGTTTTGAGCCCGTTATTAATCGATATGCTCACTACAGAT
GGAAATAGGAAAGATGCGCACTCTTGACGAGGAGGTGGCAGATGGTAAGA
ATAGCCAGGCGCAAGA
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Coding sequence (CDS) from alignment at scaffold_18:371598..373363-

>mRNA_6656 ID=mRNA_6656|Name=jgi.p|Nanoce1779_2|597624|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_18:371598..373363- (Nannochloropsis oceanica)
ATGTACTCCCTGTCGACCTACCCGGGGAACGAATACATTGAGGATCGACA
TGAGATTAGGGAGATTATGGGAGGAGATGTTTTTTGTGGAGTCTTTGATG
GTCATGGTGGGTGGCAAGTGGCCGAGTACGCCTCAGTACATTTGAGCAAG
AATCTGGAGATAGAACTAAGTAATATGGGGCATCGGTCAGAGCCGGAAGA
GGTGAGTAAAGCATTAATCCGAGCGTTTGAGCGGACTGACCGGGGAGTGA
TCCACAAGGTGCACCACGCTTTTGAAATCGGCTTGGGGAACGTGGCCAAA
GTGGGGGCTTGTGCTCTCACACTCCTGATTAAGAACCAGCATGTCTTTGT
GGCCAACGCGGGGGACTGCAGGGCGGTCTTGGGGAAGCGACAGTTGCCGG
CTACTGTCGGTGGGGCCCGAAGAACAACTAAAGGAGCAACAACTGCAAAA
GCAGCAGTAACAGCAACGGCAACAGCAGCAGCGGCAGCAGGACAATATGT
AGCTGTGGCGTTGAGCCAAGACCACAATGCCAAGCTCCCCAAGGAGGCAT
TGGCCCTCCAGCAAGCCCACCCAGGCGAGCCCGACATTGTCAAGTGCAAG
CATGCCAACGCCTGCTACGTCAAAGGTCGTTTGCAACCCACCCGAGCCCT
CGGTGACGCCTACCTCAAGTACTCCGAGTTCAACGGTCGTCCCAATCGTT
CCGACTCCAGCGCTGGCCGGTATATTCCCCCTCCGTACACCCCTCCCTAC
ATCACGGCTACCCCGGAAGTGCAGGTGTTTGAAGGGGTTCTGGACGACCC
AACGGCGGAATTTATTATCGTTGCCACAGATGGTGTGTGGGATTTGTTGA
CCAATGAAGAGGCTGTGCGCTTTGTGGGACAGACGATTGCGAAGGGTGAT
GGCATGCATGTGAGCCAGCAGTTGATTGCGCATGCCTTGGAGGCACGGGC
GAAGGATCTGGGGATGACGGTAGAGGACCTTCGGGTCCTGCCTCCAGGGA
AGGCTCGGCGATCCAAGCACGATGATATGACAGCGCTGGTGATTATGCTG
CAAGGCTCAGCCGCGGGTGTAGCGCCAGAGAGCGCAGCGGCAAACCCGCA
GGATGGCAAGGTTGATACGAGCATTGATCCGACTGTACCGCCAGGAGAGT
GA
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Synonyms
Publications