jgi.p|Nanoce1779_2|632068, mRNA_6655 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632068
Unique Name	mRNA_6655
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3596
Alignment location	scaffold_18:368038..371633 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632154
Track	FilteredModels2
ProteinId	632068

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:368038..371633 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632068	gene_6655	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632068	mRNA_6655-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6655	CDS_6655	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:368038..371633-
coding sequence from alignment at scaffold_18:368038..371633-

mRNA sequence

>mRNA_6655 ID=mRNA_6655|Name=jgi.p|Nanoce1779_2|632068|organism=Nannochloropsis oceanica|type=mRNA|length=3596bp
GGAGGTGGCAGATGGTAAGAATAGCCAGGCGCAAGAGAGCCGCAGCGGTA
GCAGCAGCAGCAACAGCAGTCGTGTTTCGTCTCCACTTTCCCTGCCTGCC
AGCATTGACGATGACCACCCCTTGCTATCGCGCCGTCGCCACGAAAAGAA
CCGCGACGACAGCCACAAAATCATGTGTGAGGATAATCCTCGAACTTTAG
ATCTCGAAGCTCAAGTCGCACTTTTACAAGCGGACCAACGCAATGGTGAA
AGAGGACGCATGCGGCTGGAGGAACAAATGCTTCGTTTTCAGCAGCAGCA
CCTGGAGAATCAGCAGGAGCAACACCAGAAGGAACATACTGATGCACAAG
CCTTGGATGATATCCGAAAGCAACTGCAAGAGTCCCGGCGGCGCGTCGTC
GGTCTCTCCGATCAGCTTGACTTTCACATGCAGGAGAATGAGCGCCTCGC
GAGGGAGACGGGGACACTCCGTACTGAAGCGCAAGCAACAGCCAAGGAGT
TACAAGCAGCTCGAGCCAAGATTCATTGTCAAGCCCACAAAGAAAGGGTT
TACGATGATGTCGCTGCCCGTCTCGATGCCGCTGAGAAAACCAACGCTGA
CCTTCAAGCCCAATTCATTCAGCAAACCGCTGCGTTGGCTCAGGCCAAGG
CCGCTCATGATGCGATGCAGAAGCGTGCTGCCGAGGCCATCCACTGTCAA
GACATGTTAGTCTTAGACAAAAACTTTCTGTCCAAGGAGCTAGAGAAAGT
ACAAGCCGAACACAGCGCAACGCTACACGACCTCCATCTCTCAAAAGATA
AGGCGCAGAAGCTGACCTTGGCCAGTGAGGCGTGGAGCCAGCAGCTGCAA
AATGTCAAGGACGAAGCCCAACAAGCCTATCAGCTGCATTTGGATGAGGA
GCGATGTCGGATAACGGCCGAGCAAGCGGGCAATAGAAGGACTTCCCAAG
AGGTGTGGGAGCGTGAGACGACCGTGCTGCGGGAGGCTCGGCAGGAAGCT
CTGTTGCAAGCAGACCGCAGCCGGCAGGAGCTCCACACGCTGCGACATGC
ACACGAAGATCTAGTGCTACAATTGGCAAAGCAAAATACCAGTGCCCAGG
CCACCATGGCCTCATTGAGAGCTGAAATTAAATGCAAGGCTTATCACTTA
GCGAGGGTAGAAGCCCTGCTGGAGGAGAAGTGCCGGACGTTTACATCCAT
ACAAGATATACTGGTCACGACGCAGACACAATACCAAGATTGCCGGGATT
CCTTGATACGATTGGAGGCCCGGGTGGCTCTGAAAGAGCACGAGCTGTCT
GTAGCTTTGGAGAAGGTCCGGTCGTACGAGGTCCTTGAGACGCAGCTGGA
TGCAGCGGTGTCCTCGGTCAGGGCACGTGGGAGGGAGGGTAGGAGGCAGG
GTAGGCAATGGATTGGCTCGGTTCCTCGGCGAATGCAGCATGCCATTTTG
TTGGCGACGCGTTTGCGGGATCGCGATGAAGAAATGATTGTCGTGCAAAA
GGCGCAAGAACGCGCTCAGGAGGAAGCGGAAGGGTTGCGGCGGCAGGTCG
GTGAGCTGCAAGAGCTTTTGCATCATTCCTCACAACCGGGGCGGTATGTG
GTGGAGTTACTCCGGGAAAAAGATAGAGAGGTGGAAGGGATGAAACATCA
GTGGCAGGTGATGAAGACAAGGGCGGAGGTGGCGGAGGCGCAGGTGCAGC
AGCTTCAGCTAGAAAGATCAAAGGAGAAAGAGACCACGCGACGAAGTTGG
CGCAGAAAGGAGGAGAAGCTAATGGATGAAGACAGGATAGAAAAGAAGGA
GAAGGGCAGGCAAAGGCTGAATCAGCGCCTTGTCAAGCATTTGTTGCTCA
TGACAACGGCGCCGTGTGGAAATGGCAGAGGCCCGAGGTGGCACACTAAA
CGTTAAAGGGAAGGAGACCCAAAAAAAGATGGGGAAAGTGAAGAATCAAT
ATTACTCGTGTGTGGTGACTCTCGGCAAAGTTATTCTTGTACTTGACCTT
CAGTAAGCACACCCAAGCGAACAGATTGAGAATGTGCAATTCTGCAATCT
TTCTCTTATTTTTGGTCTTTGTGGCCATGTCTACCGCTTTAAATTCAAGC
CCCTTTTTGTCACTTCTATGTTTGCCGTCTTCTTCTTCCTCGATCTCTCC
CCTGTCCCTCGACCCATTCCATCGCCTCAAACCCCCCTCTCGCCCAACGT
GCCTAAACAAATAAGAACTTTCGAGGATCTACCTCATGAAGTTCCCGCCT
TTCCTCCCTTCCTCCGTCACTCCCTTACTCCCTCCCTCAATATTCTCTCA
AACCTCGTCCGCAGCTGCTGCCCCTTCTCCCACCATCGGCTGCTCTTCTT
GCACTCCCCCACCATTTGTCCCCCCCAGCACCTCCTCACCCTCCTCTTTC
TTTTTCCCCGCTGTCTCTCCTTCTGCCCCGTCCTCTTCTCCTTCTCTCGC
CTCTCTATCCCTTTCCCCCTCCCTTCCCGCACTCCCACTGCGACTCCTCT
CCCTCTTTTCTCCCCCCTCCTCCGATCGACTTCTACTCCTGCTCCTCCTC
TCCCTCCTCCTCCTCGCCCGCCTTTCCAGGTCCCTCCTCAAGCCCCGCCC
GATCGTCTTGACGTGCAAAAAGTTGCAATACGGGCCATAGCTACACTGCC
CTTCATCATACTGACGGCATCTCGCTTCCCTGAAATCTGTGACTGGTGAG
AACTCCACCTGCAGTGTCTGTCCTGCGTAATAACGACCATTCAGCCCTTG
TCGCGCTTCGTCGGCCTCTTCCTCGTCCGAAAACTTGGCATAGACGTTCC
CGATCATGTGCTCGCCTAAGTTGTCACACACGTGCATTCCTTCCAAATGT
CCGAATTTGGCTAGTTCCTACAAAAGAGAGGGGCACGAGAGAGAGGGGGG
GGCAGGAAGTTAAATAATGGTTGGGGAAGGAAGGGGCAACCAGAAAAGAT
CAGCGCAAGACATGTTTGTGTGAGAGTCAAGAAGTAGGTATTCGAGAGAA
ATCTTCCACAAATAAAGGCAGACAGGGACCACCAAAGACAAACATCACGC
AAATAGAGCAAATGCACCCACCTCATAGACTTCCTCAAAGAAGTCCTCGA
AATCCTCCAAGCCCTCCTGATTCGTCTTATCATGCGCCCCCTGCGGTGCC
GCCCGCTCCCCCCGCGCTGGCGCCGTAAACAAAGCAGACGAGGGATTCTT
GTACATATGCCTCAATAGCAACGTCTGCGAGAAGGGTGGCTTATTGTGCT
TACGCGAGCACCGTTCTCCGTGGCGGCAAGCCCCAATCTTAAAGTAGAAG
GGGCAGTTGACCTTGTCTTCCTCCGTGCCGTGGATGCGAGCCAAGTGTTC
GGCGCCGCCTTTGGCATTCCCCAGGTGCCGATCGCGCCAGTGGCGCCCGC
CTTCATCGCGAGGGCCTATTGTTATTTCAGGAAAAGCGGGAGGAGGAAAA
GGAAAGAAGGAGTGAGTACGGACGGATGACGATCGATAGGAGCAGGGACA
AGACAAGTCAGCCTTTCCCGCACAAGTAAAGAACGCCCCACCCTCACACA
CACACATGTCATACCAACACGAGTAACGTACCGCGTCGGTCGCCGC

protein sequence of jgi.p|Nanoce1779_2|632068

>mRNA_6655-protein ID=mRNA_6655-protein|Name=jgi.p|Nanoce1779_2|632068|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MCEDNPRTLDLEAQVALLQADQRNGERGRMRLEEQMLRFQQQHLENQQEQ
HQKEHTDAQALDDIRKQLQESRRRVVGLSDQLDFHMQENERLARETGTLR
TEAQATAKELQAARAKIHCQAHKERVYDDVAARLDAAEKTNADLQAQFIQ
QTAALAQAKAAHDAMQKRAAEAIHCQDMLVLDKNFLSKELEKVQAEHSAT
LHDLHLSKDKAQKLTLASEAWSQQLQNVKDEAQQAYQLHLDEERCRITAE
QAGNRRTSQEVWERETTVLREARQEALLQADRSRQELHTLRHAHEDLVLQ
LAKQNTSAQATMASLRAEIKCKAYHLARVEALLEEKCRTFTSIQDILVTT
QTQYQDCRDSLIRLEARVALKEHELSVALEKVRSYEVLETQLDAAVSSVR
ARGREGRRQGRQWIGSVPRRMQHAILLATRLRDRDEEMIVVQKAQERAQE
EAEGLRRQVGELQELLHHSSQPGRYVVELLREKDREVEGMKHQWQVMKTR
AEVAEAQVQQLQLERSKEKETTRRSWRRKEEKLMDEDRIEKKEKGRQRLN
QRLVKHLLLMTTAPCGNGRGPRWHTKR*

mRNA from alignment at scaffold_18:368038..371633-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6655 ID=mRNA_6655|Name=jgi.p|Nanoce1779_2|632068|organism=Nannochloropsis oceanica|type=mRNA|length=3596bp|location=Sequence derived from alignment at scaffold_18:368038..371633- (Nannochloropsis oceanica)
GGAGGTGGCAGATGGTAAGAATAGCCAGGCGCAAGAGAGCCGCAGCGGTA
GCAGCAGCAGCAACAGCAGTCGTGTTTCGTCTCCACTTTCCCTGCCTGCC
AGCATTGACGATGACCACCCCTTGCTATCGCGCCGTCGCCACGAAAAGAA
CCGCGACGACAGCCACAAAATCATGTGTGAGGATAATCCTCGAACTTTAG
ATCTCGAAGCTCAAGTCGCACTTTTACAAGCGGACCAACGCAATGGTGAA
AGAGGACGCATGCGGCTGGAGGAACAAATGCTTCGTTTTCAGCAGCAGCA
CCTGGAGAATCAGCAGGAGCAACACCAGAAGGAACATACTGATGCACAAG
CCTTGGATGATATCCGAAAGCAACTGCAAGAGTCCCGGCGGCGCGTCGTC
GGTCTCTCCGATCAGCTTGACTTTCACATGCAGGAGAATGAGCGCCTCGC
GAGGGAGACGGGGACACTCCGTACTGAAGCGCAAGCAACAGCCAAGGAGT
TACAAGCAGCTCGAGCCAAGATTCATTGTCAAGCCCACAAAGAAAGGGTT
TACGATGATGTCGCTGCCCGTCTCGATGCCGCTGAGAAAACCAACGCTGA
CCTTCAAGCCCAATTCATTCAGCAAACCGCTGCGTTGGCTCAGGCCAAGG
CCGCTCATGATGCGATGCAGAAGCGTGCTGCCGAGGCCATCCACTGTCAA
GACATGTTAGTCTTAGACAAAAACTTTCTGTCCAAGGAGCTAGAGAAAGT
ACAAGCCGAACACAGCGCAACGCTACACGACCTCCATCTCTCAAAAGATA
AGGCGCAGAAGCTGACCTTGGCCAGTGAGGCGTGGAGCCAGCAGCTGCAA
AATGTCAAGGACGAAGCCCAACAAGCCTATCAGCTGCATTTGGATGAGGA
GCGATGTCGGATAACGGCCGAGCAAGCGGGCAATAGAAGGACTTCCCAAG
AGGTGTGGGAGCGTGAGACGACCGTGCTGCGGGAGGCTCGGCAGGAAGCT
CTGTTGCAAGCAGACCGCAGCCGGCAGGAGCTCCACACGCTGCGACATGC
ACACGAAGATCTAGTGCTACAATTGGCAAAGCAAAATACCAGTGCCCAGG
CCACCATGGCCTCATTGAGAGCTGAAATTAAATGCAAGGCTTATCACTTA
GCGAGGGTAGAAGCCCTGCTGGAGGAGAAGTGCCGGACGTTTACATCCAT
ACAAGATATACTGGTCACGACGCAGACACAATACCAAGATTGCCGGGATT
CCTTGATACGATTGGAGGCCCGGGTGGCTCTGAAAGAGCACGAGCTGTCT
GTAGCTTTGGAGAAGGTCCGGTCGTACGAGGTCCTTGAGACGCAGCTGGA
TGCAGCGGTGTCCTCGGTCAGGGCACGTGGGAGGGAGGGTAGGAGGCAGG
GTAGGCAATGGATTGGCTCGGTTCCTCGGCGAATGCAGCATGCCATTTTG
TTGGCGACGCGTTTGCGGGATCGCGATGAAGAAATGATTGTCGTGCAAAA
GGCGCAAGAACGCGCTCAGGAGGAAGCGGAAGGGTTGCGGCGGCAGGTCG
GTGAGCTGCAAGAGCTTTTGCATCATTCCTCACAACCGGGGCGGTATGTG
GTGGAGTTACTCCGGGAAAAAGATAGAGAGGTGGAAGGGATGAAACATCA
GTGGCAGGTGATGAAGACAAGGGCGGAGGTGGCGGAGGCGCAGGTGCAGC
AGCTTCAGCTAGAAAGATCAAAGGAGAAAGAGACCACGCGACGAAGTTGG
CGCAGAAAGGAGGAGAAGCTAATGGATGAAGACAGGATAGAAAAGAAGGA
GAAGGGCAGGCAAAGGCTGAATCAGCGCCTTGTCAAGCATTTGTTGCTCA
TGACAACGGCGCCGTGTGGAAATGGCAGAGGCCCGAGGTGGCACACTAAA
CGTTAAAGGGAAGGAGACCCAAAAAAAGATGGGGAAAGTGAAGAATCAAT
ATTACTCGTGTGTGGTGACTCTCGGCAAAGTTATTCTTGTACTTGACCTT
CAGTAAGCACACCCAAGCGAACAGATTGAGAATGTGCAATTCTGCAATCT
TTCTCTTATTTTTGGTCTTTGTGGCCATGTCTACCGCTTTAAATTCAAGC
CCCTTTTTGTCACTTCTATGTTTGCCGTCTTCTTCTTCCTCGATCTCTCC
CCTGTCCCTCGACCCATTCCATCGCCTCAAACCCCCCTCTCGCCCAACGT
GCCTAAACAAATAAGAACTTTCGAGGATCTACCTCATGAAGTTCCCGCCT
TTCCTCCCTTCCTCCGTCACTCCCTTACTCCCTCCCTCAATATTCTCTCA
AACCTCGTCCGCAGCTGCTGCCCCTTCTCCCACCATCGGCTGCTCTTCTT
GCACTCCCCCACCATTTGTCCCCCCCAGCACCTCCTCACCCTCCTCTTTC
TTTTTCCCCGCTGTCTCTCCTTCTGCCCCGTCCTCTTCTCCTTCTCTCGC
CTCTCTATCCCTTTCCCCCTCCCTTCCCGCACTCCCACTGCGACTCCTCT
CCCTCTTTTCTCCCCCCTCCTCCGATCGACTTCTACTCCTGCTCCTCCTC
TCCCTCCTCCTCCTCGCCCGCCTTTCCAGGTCCCTCCTCAAGCCCCGCCC
GATCGTCTTGACGTGCAAAAAGTTGCAATACGGGCCATAGCTACACTGCC
CTTCATCATACTGACGGCATCTCGCTTCCCTGAAATCTGTGACTGGTGAG
AACTCCACCTGCAGTGTCTGTCCTGCGTAATAACGACCATTCAGCCCTTG
TCGCGCTTCGTCGGCCTCTTCCTCGTCCGAAAACTTGGCATAGACGTTCC
CGATCATGTGCTCGCCTAAGTTGTCACACACGTGCATTCCTTCCAAATGT
CCGAATTTGGCTAGTTCCTACAAAAGAGAGGGGCACGAGAGAGAGGGGGG
GGCAGGAAGTTAAATAATGGTTGGGGAAGGAAGGGGCAACCAGAAAAGAT
CAGCGCAAGACATGTTTGTGTGAGAGTCAAGAAGTAGGTATTCGAGAGAA
ATCTTCCACAAATAAAGGCAGACAGGGACCACCAAAGACAAACATCACGC
AAATAGAGCAAATGCACCCACCTCATAGACTTCCTCAAAGAAGTCCTCGA
AATCCTCCAAGCCCTCCTGATTCGTCTTATCATGCGCCCCCTGCGGTGCC
GCCCGCTCCCCCCGCGCTGGCGCCGTAAACAAAGCAGACGAGGGATTCTT
GTACATATGCCTCAATAGCAACGTCTGCGAGAAGGGTGGCTTATTGTGCT
TACGCGAGCACCGTTCTCCGTGGCGGCAAGCCCCAATCTTAAAGTAGAAG
GGGCAGTTGACCTTGTCTTCCTCCGTGCCGTGGATGCGAGCCAAGTGTTC
GGCGCCGCCTTTGGCATTCCCCAGGTGCCGATCGCGCCAGTGGCGCCCGC
CTTCATCGCGAGGGCCTATTGTTATTTCAGGAAAAGCGGGAGGAGGAAAA
GGAAAGAAGGAGTGAGTACGGACGGATGACGATCGATAGGAGCAGGGACA
AGACAAGTCAGCCTTTCCCGCACAAGTAAAGAACGCCCCACCCTCACACA
CACACATGTCATACCAACACGAGTAACGTACCGCGTCGGTCGCCGC

Coding sequence (CDS) from alignment at scaffold_18:368038..371633-

>mRNA_6655 ID=mRNA_6655|Name=jgi.p|Nanoce1779_2|632068|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_18:368038..371633- (Nannochloropsis oceanica)
ATGTGTGAGGATAATCCTCGAACTTTAGATCTCGAAGCTCAAGTCGCACT
TTTACAAGCGGACCAACGCAATGGTGAAAGAGGACGCATGCGGCTGGAGG
AACAAATGCTTCGTTTTCAGCAGCAGCACCTGGAGAATCAGCAGGAGCAA
CACCAGAAGGAACATACTGATGCACAAGCCTTGGATGATATCCGAAAGCA
ACTGCAAGAGTCCCGGCGGCGCGTCGTCGGTCTCTCCGATCAGCTTGACT
TTCACATGCAGGAGAATGAGCGCCTCGCGAGGGAGACGGGGACACTCCGT
ACTGAAGCGCAAGCAACAGCCAAGGAGTTACAAGCAGCTCGAGCCAAGAT
TCATTGTCAAGCCCACAAAGAAAGGGTTTACGATGATGTCGCTGCCCGTC
TCGATGCCGCTGAGAAAACCAACGCTGACCTTCAAGCCCAATTCATTCAG
CAAACCGCTGCGTTGGCTCAGGCCAAGGCCGCTCATGATGCGATGCAGAA
GCGTGCTGCCGAGGCCATCCACTGTCAAGACATGTTAGTCTTAGACAAAA
ACTTTCTGTCCAAGGAGCTAGAGAAAGTACAAGCCGAACACAGCGCAACG
CTACACGACCTCCATCTCTCAAAAGATAAGGCGCAGAAGCTGACCTTGGC
CAGTGAGGCGTGGAGCCAGCAGCTGCAAAATGTCAAGGACGAAGCCCAAC
AAGCCTATCAGCTGCATTTGGATGAGGAGCGATGTCGGATAACGGCCGAG
CAAGCGGGCAATAGAAGGACTTCCCAAGAGGTGTGGGAGCGTGAGACGAC
CGTGCTGCGGGAGGCTCGGCAGGAAGCTCTGTTGCAAGCAGACCGCAGCC
GGCAGGAGCTCCACACGCTGCGACATGCACACGAAGATCTAGTGCTACAA
TTGGCAAAGCAAAATACCAGTGCCCAGGCCACCATGGCCTCATTGAGAGC
TGAAATTAAATGCAAGGCTTATCACTTAGCGAGGGTAGAAGCCCTGCTGG
AGGAGAAGTGCCGGACGTTTACATCCATACAAGATATACTGGTCACGACG
CAGACACAATACCAAGATTGCCGGGATTCCTTGATACGATTGGAGGCCCG
GGTGGCTCTGAAAGAGCACGAGCTGTCTGTAGCTTTGGAGAAGGTCCGGT
CGTACGAGGTCCTTGAGACGCAGCTGGATGCAGCGGTGTCCTCGGTCAGG
GCACGTGGGAGGGAGGGTAGGAGGCAGGGTAGGCAATGGATTGGCTCGGT
TCCTCGGCGAATGCAGCATGCCATTTTGTTGGCGACGCGTTTGCGGGATC
GCGATGAAGAAATGATTGTCGTGCAAAAGGCGCAAGAACGCGCTCAGGAG
GAAGCGGAAGGGTTGCGGCGGCAGGTCGGTGAGCTGCAAGAGCTTTTGCA
TCATTCCTCACAACCGGGGCGGTATGTGGTGGAGTTACTCCGGGAAAAAG
ATAGAGAGGTGGAAGGGATGAAACATCAGTGGCAGGTGATGAAGACAAGG
GCGGAGGTGGCGGAGGCGCAGGTGCAGCAGCTTCAGCTAGAAAGATCAAA
GGAGAAAGAGACCACGCGACGAAGTTGGCGCAGAAAGGAGGAGAAGCTAA
TGGATGAAGACAGGATAGAAAAGAAGGAGAAGGGCAGGCAAAGGCTGAAT
CAGCGCCTTGTCAAGCATTTGTTGCTCATGACAACGGCGCCGTGTGGAAA
TGGCAGAGGCCCGAGGTGGCACACTAAACGTTAA

Synonyms

Publications