jgi.p|Nanoce1779_2|672524, mRNA_6654 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672524
Unique Name	mRNA_6654
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2197
Alignment location	scaffold_18:367685..370251 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672610
Track	FilteredModels2
ProteinId	672524

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:367685..370251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672524	gene_6654	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672524	mRNA_6654-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6654	CDS_6654	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:367685..370251+
coding sequence from alignment at scaffold_18:367685..370251+

mRNA sequence

>mRNA_6654 ID=mRNA_6654|Name=jgi.p|Nanoce1779_2|672524|organism=Nannochloropsis oceanica|type=mRNA|length=2197bp
TGTCCCTCGCACTCATTGCATACAAGCTACCTTACAACTCCTCAGTCCCT
GGCTACAAATACGCAGATTGTTGCTGGATTCTCGTCCCTGCCCGCCTAAC
TCTTTCTCTGCCCACTCTTATCACCATGAAGAATAAGCAAGTCGCTTGTG
GATTCCACCAAGCTCACTGTCCCTCCTCTCTTTTCCCGCACACACAGACG
TTTCTCTCAGACATTCTTAAGCACCAAGCATGAGCCACTACGGGCGCGGT
GGCGGAGAGGATTACGGCCGGGACCGTGGCGACCGCGGCGGGCGTGATCG
AGGAGGGGGAGGAGGCTACTATGAAGACCGCCGGGGCGGGGACCGGCGAG
GCGGCGGCGACCGACGCGGCCCTCGCGATGAAGGCGGGCGCCACTGGCGC
GATCGGCACCTGGGGAATGCCAAAGGCGGCGCCGAACACTTGGCTCGCAT
CCACGGCACGGAGGAAGACAAGGTCAACTGCCCCTTCTACTTTAAGATTG
GGGCTTGCCGCCACGGAGAACGGTGCTCGCGTAAGCACAATAAGCCACCC
TTCTCGCAGACGTTGCTATTGAGGCATATGTACAAGAATCCCTCGTCTGC
TTTGTTTACGGCGCCAGCGCGGGGGGAGCGGGCGGCACCGCAGGGGGCGC
ATGATAAGACGAATCAGGAGGGCTTGGAGGATTTCGAGGACTTCTTTGAG
GAAGTCTATGAGGAACTAGCCAAATTCGGACATTTGGAAGGAATGCACGT
GTGTGACAACTTAGGCGAGCACATGATCGGGAACGTCTATGCCAAGTTTT
CGGACGAGGAAGAGGCCGACGAAGCGCGACAAGGGCTGAATGGTCGTTAT
TACGCAGGACAGACACTGCAGGTGGAGTTCTCACCAGTCACAGATTTCAG
GGAAGCGAGATGCCGTCAGTATGATGAAGGGCAGTGTAGCTATGGCCCGT
ATTGCAACTTTTTGCACGTCAAGACGATCGGGCGGGGCTTGAGGAGGGAC
CTGGAAAGGCGGGCGAGGAGGAGGAGGGAGAGGAGGAGCAGGAGTAGAAG
TCGATCGGAGGAGGGGGGAGAAAAGAGGGAGAGGAGTCGCAGTGGGAGTG
CGGGAAGGGAGGGGGAAAGGGATAGAGAGGCGAGAGAAGGAGAAGAGGAC
GGGGCAGAAGGAGAGACAGCGGGGAAAAAGAAAGAGGAGGGTGAGGAGGT
GCTGGGGGGGACAAATGGTGGGGGAGTGCAAGAAGAGCAGCCGATGGTGG
GAGAAGGGGCAGCAGCTGCGGACGAGGTTTGAGAGAATATTGAGGGAGGG
AGTAAGGGAGTGACGGAGGAAGGGAGGAAAGGCGGGAACTTCATGAGGTA
GATCCTCGAAAGTTCTTATTTGTTTAGGCACGTTGGGCGAGAGGGGGGTT
TGAGGCGATGGAATGGGTCGAGGGACAGGGGAGAGATCGAGGAAGAAGAA
GACGGCAAACATAGAAGTGACAAAAAGGGGCTTGAATTTAAAGCGGTAGA
CATGGCCACAAAGACCAAAAATAAGAGAAAGATTGCAGAATTGCACATTC
TCAATCTGTTCGCTTGGGTGTGCTTACTGAAGGTCAAGTACAAGAATAAC
TTTGCCGAGAGTCACCACACACGAGTAATATTGATTCTTCACTTTCCCCA
TCTTTTTTTGGGTCTCCTTCCCTTTAACGTTTAGTGTGCCACCTCGGGCC
TCTGCCATTTCCACACGGCGCCGTTGTCATGAGCAACAAATGCTTGACAA
GGCGCTGATTCAGCCTTTGCCTGCCCTTCTCCTTCTTTTCTATCCTGTCT
TCATCCATTAGCTTCTCCTCCTTTCTGCGCCAACTTCGTCGCGTGGTCTC
TTTCTCCTTTGATCTTTCTAGCTGAAGCTGCTGCACCTGCGCCTCCGCCA
CCTCCGCCCTTGTCTTCATCACCTGCCACTGATGTTTCATCCCTTCCACC
TCTCTATCTTTTTCCCGGAGTAACTCCACCACATACCGCCCCGGTTGTGA
GGAATGATGCAAAAGCTCTTGCAGCTCACCGACCTGCCGCCGCAACCCTT
CCGCTTCCTCCTGAGCGCGTTCTTGCGCCTTTTGCACGACAATCATTTCT
TCATCGCGATCCCGCAAACGCGTCGCCAACAAAATGGCATGCTGCATTCG
CCGAGGAACCGAGCCAATCCATTGCCTACCCTGCCTCCTACCCTCCC

protein sequence of jgi.p|Nanoce1779_2|672524

>mRNA_6654-protein ID=mRNA_6654-protein|Name=jgi.p|Nanoce1779_2|672524|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MSHYGRGGGEDYGRDRGDRGGRDRGGGGGYYEDRRGGDRRGGGDRRGPRD
EGGRHWRDRHLGNAKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCS
RKHNKPPFSQTLLLRHMYKNPSSALFTAPARGERAAPQGAHDKTNQEGLE
DFEDFFEEVYEELAKFGHLEGMHVCDNLGEHMIGNVYAKFSDEEEADEAR
QGLNGRYYAGQTLQVEFSPVTDFREARCRQYDEGQCSYGPYCNFLHVKTI
GRGLRRDLERRARRRRERRSRSRSRSEEGGEKRERSRSGSAGREGERDRE
AREGEEDGAEGETAGKKKEEGEEVLGGTNGGGVQEEQPMVGEGAAAADEV
*

mRNA from alignment at scaffold_18:367685..370251+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6654 ID=mRNA_6654|Name=jgi.p|Nanoce1779_2|672524|organism=Nannochloropsis oceanica|type=mRNA|length=2567bp|location=Sequence derived from alignment at scaffold_18:367685..370251+ (Nannochloropsis oceanica)
TGTCCCTCGCACTCATTGCATACAAGCTACCTTACAACTCCTCAGTCCCT
GGCTACAAATACGCAGATTGTTGCTGGATTCTCGTCCCTGCCCGCCTAAC
TCTTTCTCTGCCCACTCTTATCACCATGAAGAATAAGCAAGTCGCTTGTG
GATTCCACCAAGCTCACTGTCCCTCCTCTCTTTTCCCGCACACACAGACG
TTTCTCTCAGACATTCTTAAGCACCAAGCATGAGCCACTACGGGCGCGGT
GGCGGAGAGGATTACGGCCGGGACCGTGGCGACCGCGGCGGGCGTGATCG
AGGAGGGGGAGGAGGCTACTATGAAGACCGCCGGGGCGGGGACCGGCGAG
GCGGCGGCGACCGACGCGGTACGTTACTCGTGTTGGTATGACATGTGTGT
GTGTGAGGGTGGGGCGTTCTTTACTTGTGCGGGAAAGGCTGACTTGTCTT
GTCCCTGCTCCTATCGATCGTCATCCGTCCGTACTCACTCCTTCTTTCCT
TTTCCTCCTCCCGCTTTTCCTGAAATAACAATAGGCCCTCGCGATGAAGG
CGGGCGCCACTGGCGCGATCGGCACCTGGGGAATGCCAAAGGCGGCGCCG
AACACTTGGCTCGCATCCACGGCACGGAGGAAGACAAGGTCAACTGCCCC
TTCTACTTTAAGATTGGGGCTTGCCGCCACGGAGAACGGTGCTCGCGTAA
GCACAATAAGCCACCCTTCTCGCAGACGTTGCTATTGAGGCATATGTACA
AGAATCCCTCGTCTGCTTTGTTTACGGCGCCAGCGCGGGGGGAGCGGGCG
GCACCGCAGGGGGCGCATGATAAGACGAATCAGGAGGGCTTGGAGGATTT
CGAGGACTTCTTTGAGGAAGTCTATGAGGTGGGTGCATTTGCTCTATTTG
CGTGATGTTTGTCTTTGGTGGTCCCTGTCTGCCTTTATTTGTGGAAGATT
TCTCTCGAATACCTACTTCTTGACTCTCACACAAACATGTCTTGCGCTGA
TCTTTTCTGGTTGCCCCTTCCTTCCCCAACCATTATTTAACTTCCTGCCC
CCCCCTCTCTCTCGTGCCCCTCTCTTTTGTAGGAACTAGCCAAATTCGGA
CATTTGGAAGGAATGCACGTGTGTGACAACTTAGGCGAGCACATGATCGG
GAACGTCTATGCCAAGTTTTCGGACGAGGAAGAGGCCGACGAAGCGCGAC
AAGGGCTGAATGGTCGTTATTACGCAGGACAGACACTGCAGGTGGAGTTC
TCACCAGTCACAGATTTCAGGGAAGCGAGATGCCGTCAGTATGATGAAGG
GCAGTGTAGCTATGGCCCGTATTGCAACTTTTTGCACGTCAAGACGATCG
GGCGGGGCTTGAGGAGGGACCTGGAAAGGCGGGCGAGGAGGAGGAGGGAG
AGGAGGAGCAGGAGTAGAAGTCGATCGGAGGAGGGGGGAGAAAAGAGGGA
GAGGAGTCGCAGTGGGAGTGCGGGAAGGGAGGGGGAAAGGGATAGAGAGG
CGAGAGAAGGAGAAGAGGACGGGGCAGAAGGAGAGACAGCGGGGAAAAAG
AAAGAGGAGGGTGAGGAGGTGCTGGGGGGGACAAATGGTGGGGGAGTGCA
AGAAGAGCAGCCGATGGTGGGAGAAGGGGCAGCAGCTGCGGACGAGGTTT
GAGAGAATATTGAGGGAGGGAGTAAGGGAGTGACGGAGGAAGGGAGGAAA
GGCGGGAACTTCATGAGGTAGATCCTCGAAAGTTCTTATTTGTTTAGGCA
CGTTGGGCGAGAGGGGGGTTTGAGGCGATGGAATGGGTCGAGGGACAGGG
GAGAGATCGAGGAAGAAGAAGACGGCAAACATAGAAGTGACAAAAAGGGG
CTTGAATTTAAAGCGGTAGACATGGCCACAAAGACCAAAAATAAGAGAAA
GATTGCAGAATTGCACATTCTCAATCTGTTCGCTTGGGTGTGCTTACTGA
AGGTCAAGTACAAGAATAACTTTGCCGAGAGTCACCACACACGAGTAATA
TTGATTCTTCACTTTCCCCATCTTTTTTTGGGTCTCCTTCCCTTTAACGT
TTAGTGTGCCACCTCGGGCCTCTGCCATTTCCACACGGCGCCGTTGTCAT
GAGCAACAAATGCTTGACAAGGCGCTGATTCAGCCTTTGCCTGCCCTTCT
CCTTCTTTTCTATCCTGTCTTCATCCATTAGCTTCTCCTCCTTTCTGCGC
CAACTTCGTCGCGTGGTCTCTTTCTCCTTTGATCTTTCTAGCTGAAGCTG
CTGCACCTGCGCCTCCGCCACCTCCGCCCTTGTCTTCATCACCTGCCACT
GATGTTTCATCCCTTCCACCTCTCTATCTTTTTCCCGGAGTAACTCCACC
ACATACCGCCCCGGTTGTGAGGAATGATGCAAAAGCTCTTGCAGCTCACC
GACCTGCCGCCGCAACCCTTCCGCTTCCTCCTGAGCGCGTTCTTGCGCCT
TTTGCACGACAATCATTTCTTCATCGCGATCCCGCAAACGCGTCGCCAAC
AAAATGGCATGCTGCATTCGCCGAGGAACCGAGCCAATCCATTGCCTACC
CTGCCTCCTACCCTCCC

Coding sequence (CDS) from alignment at scaffold_18:367685..370251+

>mRNA_6654 ID=mRNA_6654|Name=jgi.p|Nanoce1779_2|672524|organism=Nannochloropsis oceanica|type=CDS|length=3159bp|location=Sequence derived from alignment at scaffold_18:367685..370251+ (Nannochloropsis oceanica)
ATGAGCCACTACGGGCGCGGTGGCGGAGAGGATTACGGCCGGGACCGTGG
CGACCGCGGCGGGCGTGATCGAGGAGGGGGAGGAGGCTACTATGAAGACC
GCCGGGGCGGGGACCGGCGAGGCGGCGGCGACCGACGCGGCCCTCGCGAT
GAAGGCGGGCGCCACTGGCGCGATCGGCACCTGGGGAATGCCAAAGGCGG
CGCCGAACACTTGGCTCGCATCCACGGCACGGAGGAAGACAAGGTCAACT
GCCCCTTCTACTTTAAGATTGGGGCTTGCCGCCACGGAGAACGGTGCTCG
CGTAAGCACAATAAGCCACCCTTCTCGCAGACGTTGCTATTGAGGCATAT
GTACAAGAATCCCTCGTCTGCTTTGTTTACGGCGCCAGCGCGGGGGGAGC
GGGCGGCACCGCAGGGGGCGCATGATAAGACGAATCAGGAGGGCTTGGAG
GATTTCGAGGACTTCTTTGAGGAAGTCTATGAGGAACTAGCCAAATTCGG
ACATTTGGAAGGAATGCACGTGTGTGACAACTTAGGCGAGCACATGATCG
GGAACGTCTATGCCAAGTTTTCGGACGAGGAAGAGGCCGACGAAGCGCGA
CAAGGGCTGAATGGTCGTTATTACGCAGGACAGACACTGCAGGTGGAGTT
CTCACCAGTCACAGATTTCAGGGAAGCGAGATGCCGTCAGTATGATGAAG
GGCAGTGTAGCTATGGCCCGTATTGCAACTTTTTGCACGTCAAGACGATC
GGGCGGGGCTTGAGGAGGGACCTGGAAAGGCGGGCGAGGAGGAGGAGGGA
GAGGAGGAGCAGGAGTAGAAGTCGATCGGAGGAGGGGGGAGAAAAGAGGG
AGAGGAGTCGCAGTGGGAGTGCGGGAAGGGAGGGGGAAAGGGATAGAGAG
GCGAGAGAAGGAGAAGAGGACGGGGCAGAAGGAGAGACAGCGGGGAAAAA
GAAAGAGGAGGGTGAGGAGGTGCTGGGGGGGACAAATGGTGGGGGAGTGC
AAGAAGAGCAGCCGATGGTGGGAGAAGGGGCAGCAGCTGCGGACGAGGTT
TGAATGAGCCACTACGGGCGCGGTGGCGGAGAGGATTACGGCCGGGACCG
TGGCGACCGCGGCGGGCGTGATCGAGGAGGGGGAGGAGGCTACTATGAAG
ACCGCCGGGGCGGGGACCGGCGAGGCGGCGGCGACCGACGCGGCCCTCGC
GATGAAGGCGGGCGCCACTGGCGCGATCGGCACCTGGGGAATGCCAAAGG
CGGCGCCGAACACTTGGCTCGCATCCACGGCACGGAGGAAGACAAGGTCA
ACTGCCCCTTCTACTTTAAGATTGGGGCTTGCCGCCACGGAGAACGGTGC
TCGCGTAAGCACAATAAGCCACCCTTCTCGCAGACGTTGCTATTGAGGCA
TATGTACAAGAATCCCTCGTCTGCTTTGTTTACGGCGCCAGCGCGGGGGG
AGCGGGCGGCACCGCAGGGGGCGCATGATAAGACGAATCAGGAGGGCTTG
GAGGATTTCGAGGACTTCTTTGAGGAAGTCTATGAGGAACTAGCCAAATT
CGGACATTTGGAAGGAATGCACGTGTGTGACAACTTAGGCGAGCACATGA
TCGGGAACGTCTATGCCAAGTTTTCGGACGAGGAAGAGGCCGACGAAGCG
CGACAAGGGCTGAATGGTCGTTATTACGCAGGACAGACACTGCAGGTGGA
GTTCTCACCAGTCACAGATTTCAGGGAAGCGAGATGCCGTCAGTATGATG
AAGGGCAGTGTAGCTATGGCCCGTATTGCAACTTTTTGCACGTCAAGACG
ATCGGGCGGGGCTTGAGGAGGGACCTGGAAAGGCGGGCGAGGAGGAGGAG
GGAGAGGAGGAGCAGGAGTAGAAGTCGATCGGAGGAGGGGGGAGAAAAGA
GGGAGAGGAGTCGCAGTGGGAGTGCGGGAAGGGAGGGGGAAAGGGATAGA
GAGGCGAGAGAAGGAGAAGAGGACGGGGCAGAAGGAGAGACAGCGGGGAA
AAAGAAAGAGGAGGGTGAGGAGGTGCTGGGGGGGACAAATGGTGGGGGAG
TGCAAGAAGAGCAGCCGATGGTGGGAGAAGGGGCAGCAGCTGCGGACGAG
GTTTGAATGAGCCACTACGGGCGCGGTGGCGGAGAGGATTACGGCCGGGA
CCGTGGCGACCGCGGCGGGCGTGATCGAGGAGGGGGAGGAGGCTACTATG
AAGACCGCCGGGGCGGGGACCGGCGAGGCGGCGGCGACCGACGCGGCCCT
CGCGATGAAGGCGGGCGCCACTGGCGCGATCGGCACCTGGGGAATGCCAA
AGGCGGCGCCGAACACTTGGCTCGCATCCACGGCACGGAGGAAGACAAGG
TCAACTGCCCCTTCTACTTTAAGATTGGGGCTTGCCGCCACGGAGAACGG
TGCTCGCGTAAGCACAATAAGCCACCCTTCTCGCAGACGTTGCTATTGAG
GCATATGTACAAGAATCCCTCGTCTGCTTTGTTTACGGCGCCAGCGCGGG
GGGAGCGGGCGGCACCGCAGGGGGCGCATGATAAGACGAATCAGGAGGGC
TTGGAGGATTTCGAGGACTTCTTTGAGGAAGTCTATGAGGAACTAGCCAA
ATTCGGACATTTGGAAGGAATGCACGTGTGTGACAACTTAGGCGAGCACA
TGATCGGGAACGTCTATGCCAAGTTTTCGGACGAGGAAGAGGCCGACGAA
GCGCGACAAGGGCTGAATGGTCGTTATTACGCAGGACAGACACTGCAGGT
GGAGTTCTCACCAGTCACAGATTTCAGGGAAGCGAGATGCCGTCAGTATG
ATGAAGGGCAGTGTAGCTATGGCCCGTATTGCAACTTTTTGCACGTCAAG
ACGATCGGGCGGGGCTTGAGGAGGGACCTGGAAAGGCGGGCGAGGAGGAG
GAGGGAGAGGAGGAGCAGGAGTAGAAGTCGATCGGAGGAGGGGGGAGAAA
AGAGGGAGAGGAGTCGCAGTGGGAGTGCGGGAAGGGAGGGGGAAAGGGAT
AGAGAGGCGAGAGAAGGAGAAGAGGACGGGGCAGAAGGAGAGACAGCGGG
GAAAAAGAAAGAGGAGGGTGAGGAGGTGCTGGGGGGGACAAATGGTGGGG
GAGTGCAAGAAGAGCAGCCGATGGTGGGAGAAGGGGCAGCAGCTGCGGAC
GAGGTTTGA

Synonyms

Publications