jgi.p|Nanoce1779_2|597616, mRNA_6653 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597616
Unique NamemRNA_6653
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length426
Alignment locationscaffold_18:366812..367516 -

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Properties
Property NameValue
TranscriptId597702
TrackFilteredModels2
ProteinId597616
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:366812..367516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597616gene_6653Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597616mRNA_6653-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6653CDS_6653Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6653 ID=mRNA_6653|Name=jgi.p|Nanoce1779_2|597616|organism=Nannochloropsis oceanica|type=mRNA|length=426bp
ACAGCAGGCGCACGCTGTCTCCGAACTTGCCCCTAGACCACAGGTTTTCC
TCTAGAGCACGCACCGAGTCTTGTCTTCCTCTTGAAAGACACTCTTCCGC
AACTCGACCTCCCCACTCCGCCCGCGATGCGCTCATTCCTCCAAATCGTG
GTCAGGGTCGTCCCTGCCTGCATGCTGGTGGGCGCAGGCATGGAACTTTT
CATGCTTAATACTGGTTTCTACGACGTGGCCTTGCGGAAGGAAGCCGAGA
GACGCATCGAGCAAGTCAAGGAACGGGAGGCATTAAGCCGTCAAATGGAA
GACACCAAACGAAAGCAATTGGAGTGAGGTCTGGGCGCGTTAAAGACAAT
GTATGCACGTCCACAAGCATAGAAGCCATGGGGTAGCTGTGTATGTAAAA
AACCAAAGTGGAACATGTACATAATA
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protein sequence of jgi.p|Nanoce1779_2|597616

>mRNA_6653-protein ID=mRNA_6653-protein|Name=jgi.p|Nanoce1779_2|597616|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MRSFLQIVVRVVPACMLVGAGMELFMLNTGFYDVALRKEAERRIEQVKER
EALSRQMEDTKRKQLE*
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mRNA from alignment at scaffold_18:366812..367516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6653 ID=mRNA_6653|Name=jgi.p|Nanoce1779_2|597616|organism=Nannochloropsis oceanica|type=mRNA|length=705bp|location=Sequence derived from alignment at scaffold_18:366812..367516- (Nannochloropsis oceanica)
ACAGCAGGCGCACGCTGTCTCCGAACTTGCCCCTAGACCACAGGTTTTCC
TCTAGAGCACGCACCGAGTCTTGTCTTCCTCTTGAAAGACACTCTTCCGC
AACTCGACCTCCCCACTCCGCCCGCGATGCGCTCATTCCTCCAAATCGTG
GTCAGGGTCGTCCCTGCCTGCATGCTGGTGGGCGCAGGCATGGAACTTTT
CATGCTTAATACTGGTTTCTGTAAGTGCTGCAGAGTGTGTCGGGTCTTGA
ACTTTTTTGAGTTTGGTGTTCTGCTTTTGCCTTCCCACCCGTGCGACCCC
CCTGACGTGGTTTGCATTTATATATACATGCAAACCACGATGCAGCATAA
CACCACCTCCTCTTTCTTCTCCAGTACTGTAAGCTGTGTCTTCACACATC
CTGTGTCTATCCCATGCTTTCTTCCAGTCAATCTCTCCTCCCTTGCCTCA
CTTACCAGTTCCCTTTAACTTCCACCTCTCTCTTCCCTTTCCCCGTCAGA
CGACGTGGCCTTGCGGAAGGAAGCCGAGAGACGCATCGAGCAAGTCAAGG
AACGGGAGGCATTAAGCCGTCAAATGGAAGACACCAAACGAAAGCAATTG
GAGTGAGGTCTGGGCGCGTTAAAGACAATGTATGCACGTCCACAAGCATA
GAAGCCATGGGGTAGCTGTGTATGTAAAAAACCAAAGTGGAACATGTACA
TAATA
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Coding sequence (CDS) from alignment at scaffold_18:366812..367516-

>mRNA_6653 ID=mRNA_6653|Name=jgi.p|Nanoce1779_2|597616|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_18:366812..367516- (Nannochloropsis oceanica)
ACGACGTGGCCTTGCGGAAGGAAGCCGAGAGACGCATCGAGCAAGTCAAG
GAACGGGAGGCATTAAGCCGTCAAATGGAAGACACCAAACGAAAGCAATT
GGAGTGAATGCGCTCATTCCTCCAAATCGTGGTCAGGGTCGTCCCTGCCT
GCATGCTGGTGGGCGCAGGCATGGAACTTTTCATGCTTAATACTGGTTTC
TACGACGTGGCCTTGCGGAAGGAAGCCGAGAGACGCATCGAGCAAGTCAA
GGAACGGGAGGCATTAAGCCGTCAAATGGAAGACACCAAACGAAAGCAAT
TGGAGTGAATGCGCTCATTCCTCCAAATCGTGGTCAGGGTCGTCCCTGCC
TGCATGCTGGTGGGCGCAGGCATGGAACTTTTCATGCTTAATACTGGTTT
CT
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Synonyms
Publications