jgi.p|Nanoce1779_2|597610, mRNA_6652 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597610
Unique NamemRNA_6652
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length781
Alignment locationscaffold_18:364429..365209 +

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Properties
Property NameValue
TranscriptId597696
TrackFilteredModels2
ProteinId597610
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:364429..365209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597610gene_6652Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597610mRNA_6652-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6652CDS_6652Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6652 ID=mRNA_6652|Name=jgi.p|Nanoce1779_2|597610|organism=Nannochloropsis oceanica|type=mRNA|length=781bp
GCTGGATCAACAGCAGCGCCAGCAGCGGTGTGGCCCTTCCTCCTCCCTCG
CCACCACGGAAGGCGATCCAGTCGACTGAAGCAAGGCCATGCTGGATAAA
GGAGCAGCAGCAGCAGCTGCAGCAGGAGAAGGAGATGGAATTGAAGAGGG
GGATAACGGGAAAGGTAAGGTGCAGGTGTGGTGTGTGGAGAAAAAGGAAA
AGGTCGAGGTTCCTCCCTCTCAGCACGGACACTTTTTCAGCAGCGATTCC
TACTTGGTTCTGTACACATGTTCAAAGGAGGCGAGGGAGAATCAGATAAC
CTACACGTGGCAGGGCACAGGAGGCAGTGTGGATGAATAGAGCGCGTGTG
CGTTGTTGGCCATCGGGTTGGACGGGATGCAGGGAAGGGTTCCCGTGCAA
GTGAGGGTGGTTTAAGGGAAGGAGCCCGCGCATTTTCGGCGATTGTTTAA
GGGACAGTTGGTCGTGCACACAGGGAGCGTGGAGAGCGGCTTTCGTAGCG
CCAGACAGCGACAAGGGTCCAAGATGGAGGAAAAAGGGAAGGCTTCTGCC
ACTACTGCGTCGATTGCTGCTGCTGGCACCGGCCTTGTTTCATGTCAAGG
GGACCACGCTGGAGAATGTATGCGCTGTCCAAATGCCCACAACGCCCCAA
AATCTCAATTCGGGCGATTGTTTTGTTTTGTCTTTGCCCCAGGACGATTA
AATGGAGCAAAGCCGCAGAGAGGGAGGCAACGGTGGTGCTGGGGGAGGTC
ATGTTGACGCAGCAGGTGGAGGTGGGGATGG
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protein sequence of jgi.p|Nanoce1779_2|597610

>mRNA_6652-protein ID=mRNA_6652-protein|Name=jgi.p|Nanoce1779_2|597610|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MLDKGAAAAAAAGEGDGIEEGDNGKGKVQVWCVEKKEKVEVPPSQHGHFF
SSDSYLVLYTCSKEARENQITYTWQGTGGSVDE*
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mRNA from alignment at scaffold_18:364429..365209+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6652 ID=mRNA_6652|Name=jgi.p|Nanoce1779_2|597610|organism=Nannochloropsis oceanica|type=mRNA|length=781bp|location=Sequence derived from alignment at scaffold_18:364429..365209+ (Nannochloropsis oceanica)
GCTGGATCAACAGCAGCGCCAGCAGCGGTGTGGCCCTTCCTCCTCCCTCG
CCACCACGGAAGGCGATCCAGTCGACTGAAGCAAGGCCATGCTGGATAAA
GGAGCAGCAGCAGCAGCTGCAGCAGGAGAAGGAGATGGAATTGAAGAGGG
GGATAACGGGAAAGGTAAGGTGCAGGTGTGGTGTGTGGAGAAAAAGGAAA
AGGTCGAGGTTCCTCCCTCTCAGCACGGACACTTTTTCAGCAGCGATTCC
TACTTGGTTCTGTACACATGTTCAAAGGAGGCGAGGGAGAATCAGATAAC
CTACACGTGGCAGGGCACAGGAGGCAGTGTGGATGAATAGAGCGCGTGTG
CGTTGTTGGCCATCGGGTTGGACGGGATGCAGGGAAGGGTTCCCGTGCAA
GTGAGGGTGGTTTAAGGGAAGGAGCCCGCGCATTTTCGGCGATTGTTTAA
GGGACAGTTGGTCGTGCACACAGGGAGCGTGGAGAGCGGCTTTCGTAGCG
CCAGACAGCGACAAGGGTCCAAGATGGAGGAAAAAGGGAAGGCTTCTGCC
ACTACTGCGTCGATTGCTGCTGCTGGCACCGGCCTTGTTTCATGTCAAGG
GGACCACGCTGGAGAATGTATGCGCTGTCCAAATGCCCACAACGCCCCAA
AATCTCAATTCGGGCGATTGTTTTGTTTTGTCTTTGCCCCAGGACGATTA
AATGGAGCAAAGCCGCAGAGAGGGAGGCAACGGTGGTGCTGGGGGAGGTC
ATGTTGACGCAGCAGGTGGAGGTGGGGATGG
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Coding sequence (CDS) from alignment at scaffold_18:364429..365209+

>mRNA_6652 ID=mRNA_6652|Name=jgi.p|Nanoce1779_2|597610|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_18:364429..365209+ (Nannochloropsis oceanica)
ATGCTGGATAAAGGAGCAGCAGCAGCAGCTGCAGCAGGAGAAGGAGATGG
AATTGAAGAGGGGGATAACGGGAAAGGTAAGGTGCAGGTGTGGTGTGTGG
AGAAAAAGGAAAAGGTCGAGGTTCCTCCCTCTCAGCACGGACACTTTTTC
AGCAGCGATTCCTACTTGGTTCTGTACACATGTTCAAAGGAGGCGAGGGA
GAATCAGATAACCTACACGTGGCAGGGCACAGGAGGCAGTGTGGATGAAT
AG
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Synonyms
Publications