jgi.p|Nanoce1779_2|597607, mRNA_6651 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597607
Unique NamemRNA_6651
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1318
Alignment locationscaffold_18:363136..364453 +

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Properties
Property NameValue
TranscriptId597693
TrackFilteredModels2
ProteinId597607
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:363136..364453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597607gene_6651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597607mRNA_6651-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6651CDS_6651Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6651 ID=mRNA_6651|Name=jgi.p|Nanoce1779_2|597607|organism=Nannochloropsis oceanica|type=mRNA|length=1318bp
GTGCTGTGCCGGTACCTGGTCGTATCGTGTGCTCGTTCTCTCCAACTCAC
AACATTCACCGTCTCCACTTCTCTGCAACACAGGCAACTTCCAAAGCATT
GTTATGAGCGAGCGATGGTGGCCTTACCCGCCGTCGACCCAGCTTTCCGA
GTCTCTGGCAGCACCCCGGGGCTCGAGCTATGGCGCATCGAGAACCTAAA
GCCCGTGAGGCAGGAGGCCGTGACGGGGCTCTTTTTCGATGCCTACATTC
TTAGCTACTACACAGAAAAAGTCTAGTGCCCTTCAACACTCGGTCCAGTT
CTGGTTGGGCTCCGAAGCAGCCAGGACGAGATTGGAGTGGCTGCTTTCAC
AGCAGTGGAACTCGATGATGCGTTGGATGGGGTCGCAGTGCAGTACCGTG
AGACACAGGGGCACGAGTCGGCCGTGTTTATGTCGTATTTCAAACGACGG
GTGACCTCCGATACCTGGCTGGGGGGGTCAAGAGCGGTTTAAGAAAGGCG
GAACGCGACGTCTGGCCAATCCGCATGCTGCACATCAAAGGCGCTCGCAT
GGCGCATGCCACGGAAGTCCCTCTCGCGCACAGCAGCCTGAACATGGGCG
ATTGCTTTATGTTGGACAAGGGACTTAAACTCTATTTGTACCATGTGCCC
GAGGCGAATCGAGCCGAGAAGACTAAGGTTTTGGAGCTTATTTTGCGCAT
CCGCGATATGGAACTCAGTGGACGTGCAGATTTGATCCTTGTCAACGAAT
GGGAGAAGGATGATGAGAACAAGTACAAGGATTTTGGGACGGCATTTGGG
GAGGAGAGGAAGCCTGTGACGAAAAAGGGAGGGGCTGACATAGTGGCTGA
GGAGACGGCGAGTGAGAAGATATCGCTTGTTCGTGTGTCGGAGATGAGTG
GGAAGTTGACGTTAAGGTGGGGTGTCTGTGTGGGTGGGGAAAGGGACGAC
GGCCGAAGAAAAAGAGGGGGGGATACGCTTGGCGACCACCTCCCTGGAGA
AATCCCATCGGTCGATATTAACATGCCCGTGAAGCGGGTGATGAAAGGGG
GGGAGATGGCGGTACATATCAGGTAAGGGCTTTAATATTAATGTCCGACC
CCGCCGGCTACTCCGTCCGTCGGATTCCTCCCTACATTCCCGTCATCCTC
GATGTACCCTGCTCCCAATAAATAGAAAGTAACAAGCTTTCAAATTCGAA
TTTGGATTTGTTGCCTTCCTCCCTCCTTCCTTCCCTCCCTCCGAAGTTAT
TTTGCTGAGTGGAACGCCCCCTTGCCCATGGGCATGGGGAGCAGCTGGAT
CAACAGCAGCGCCAGCAG
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protein sequence of jgi.p|Nanoce1779_2|597607

>mRNA_6651-protein ID=mRNA_6651-protein|Name=jgi.p|Nanoce1779_2|597607|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MLHIKGARMAHATEVPLAHSSLNMGDCFMLDKGLKLYLYHVPEANRAEKT
KVLELILRIRDMELSGRADLILVNEWEKDDENKYKDFGTAFGEERKPVTK
KGGADIVAEETASEKISLVRVSEMSGKLTLRWGVCVGGERDDGRRKRGGD
TLGDHLPGEIPSVDINMPVKRVMKGGEMAVHIR*
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mRNA from alignment at scaffold_18:363136..364453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6651 ID=mRNA_6651|Name=jgi.p|Nanoce1779_2|597607|organism=Nannochloropsis oceanica|type=mRNA|length=1318bp|location=Sequence derived from alignment at scaffold_18:363136..364453+ (Nannochloropsis oceanica)
GTGCTGTGCCGGTACCTGGTCGTATCGTGTGCTCGTTCTCTCCAACTCAC
AACATTCACCGTCTCCACTTCTCTGCAACACAGGCAACTTCCAAAGCATT
GTTATGAGCGAGCGATGGTGGCCTTACCCGCCGTCGACCCAGCTTTCCGA
GTCTCTGGCAGCACCCCGGGGCTCGAGCTATGGCGCATCGAGAACCTAAA
GCCCGTGAGGCAGGAGGCCGTGACGGGGCTCTTTTTCGATGCCTACATTC
TTAGCTACTACACAGAAAAAGTCTAGTGCCCTTCAACACTCGGTCCAGTT
CTGGTTGGGCTCCGAAGCAGCCAGGACGAGATTGGAGTGGCTGCTTTCAC
AGCAGTGGAACTCGATGATGCGTTGGATGGGGTCGCAGTGCAGTACCGTG
AGACACAGGGGCACGAGTCGGCCGTGTTTATGTCGTATTTCAAACGACGG
GTGACCTCCGATACCTGGCTGGGGGGGTCAAGAGCGGTTTAAGAAAGGCG
GAACGCGACGTCTGGCCAATCCGCATGCTGCACATCAAAGGCGCTCGCAT
GGCGCATGCCACGGAAGTCCCTCTCGCGCACAGCAGCCTGAACATGGGCG
ATTGCTTTATGTTGGACAAGGGACTTAAACTCTATTTGTACCATGTGCCC
GAGGCGAATCGAGCCGAGAAGACTAAGGTTTTGGAGCTTATTTTGCGCAT
CCGCGATATGGAACTCAGTGGACGTGCAGATTTGATCCTTGTCAACGAAT
GGGAGAAGGATGATGAGAACAAGTACAAGGATTTTGGGACGGCATTTGGG
GAGGAGAGGAAGCCTGTGACGAAAAAGGGAGGGGCTGACATAGTGGCTGA
GGAGACGGCGAGTGAGAAGATATCGCTTGTTCGTGTGTCGGAGATGAGTG
GGAAGTTGACGTTAAGGTGGGGTGTCTGTGTGGGTGGGGAAAGGGACGAC
GGCCGAAGAAAAAGAGGGGGGGATACGCTTGGCGACCACCTCCCTGGAGA
AATCCCATCGGTCGATATTAACATGCCCGTGAAGCGGGTGATGAAAGGGG
GGGAGATGGCGGTACATATCAGGTAAGGGCTTTAATATTAATGTCCGACC
CCGCCGGCTACTCCGTCCGTCGGATTCCTCCCTACATTCCCGTCATCCTC
GATGTACCCTGCTCCCAATAAATAGAAAGTAACAAGCTTTCAAATTCGAA
TTTGGATTTGTTGCCTTCCTCCCTCCTTCCTTCCCTCCCTCCGAAGTTAT
TTTGCTGAGTGGAACGCCCCCTTGCCCATGGGCATGGGGAGCAGCTGGAT
CAACAGCAGCGCCAGCAG
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Coding sequence (CDS) from alignment at scaffold_18:363136..364453+

>mRNA_6651 ID=mRNA_6651|Name=jgi.p|Nanoce1779_2|597607|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_18:363136..364453+ (Nannochloropsis oceanica)
ATGCTGCACATCAAAGGCGCTCGCATGGCGCATGCCACGGAAGTCCCTCT
CGCGCACAGCAGCCTGAACATGGGCGATTGCTTTATGTTGGACAAGGGAC
TTAAACTCTATTTGTACCATGTGCCCGAGGCGAATCGAGCCGAGAAGACT
AAGGTTTTGGAGCTTATTTTGCGCATCCGCGATATGGAACTCAGTGGACG
TGCAGATTTGATCCTTGTCAACGAATGGGAGAAGGATGATGAGAACAAGT
ACAAGGATTTTGGGACGGCATTTGGGGAGGAGAGGAAGCCTGTGACGAAA
AAGGGAGGGGCTGACATAGTGGCTGAGGAGACGGCGAGTGAGAAGATATC
GCTTGTTCGTGTGTCGGAGATGAGTGGGAAGTTGACGTTAAGGTGGGGTG
TCTGTGTGGGTGGGGAAAGGGACGACGGCCGAAGAAAAAGAGGGGGGGAT
ACGCTTGGCGACCACCTCCCTGGAGAAATCCCATCGGTCGATATTAACAT
GCCCGTGAAGCGGGTGATGAAAGGGGGGGAGATGGCGGTACATATCAGGT
AA
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Synonyms
Publications