jgi.p|Nanoce1779_2|640918, mRNA_6650 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640918
Unique NamemRNA_6650
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length258
Alignment locationscaffold_18:363250..363627 +

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Properties
Property NameValue
TranscriptId641004
TrackFilteredModels2
ProteinId640918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:363250..363627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640918gene_6650Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640918mRNA_6650-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6650CDS_6650Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6650 ID=mRNA_6650|Name=jgi.p|Nanoce1779_2|640918|organism=Nannochloropsis oceanica|type=mRNA|length=258bp
ATGGTGGCCTTACCCGCCGTCGACCCAGCTTTCCGAGTCTCTGGCAGCAC
CCCGGGGCTCGAGCTATGGCGCATCGAGAACCTAAAGCCCGACGAGATTG
GAGTGGCTGCTTTCACAGCAGTGGAACTCGATGATGCGTTGGATGGGGTC
GCAGTGCAGTACCGTGAGACACAGGGGCACGAGTCGGCCGTGTTTATGTC
GTATTTCAAACGACGGGTGACCTCCGATACCTGGCTGGGGGGGTCAAGAG
CGGTTTAA
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protein sequence of jgi.p|Nanoce1779_2|640918

>mRNA_6650-protein ID=mRNA_6650-protein|Name=jgi.p|Nanoce1779_2|640918|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MVALPAVDPAFRVSGSTPGLELWRIENLKPDEIGVAAFTAVELDDALDGV
AVQYRETQGHESAVFMSYFKRRVTSDTWLGGSRAV*
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mRNA from alignment at scaffold_18:363250..363627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6650 ID=mRNA_6650|Name=jgi.p|Nanoce1779_2|640918|organism=Nannochloropsis oceanica|type=mRNA|length=378bp|location=Sequence derived from alignment at scaffold_18:363250..363627+ (Nannochloropsis oceanica)
ATGGTGGCCTTACCCGCCGTCGACCCAGCTTTCCGAGTCTCTGGCAGCAC
CCCGGGGCTCGAGCTATGGCGCATCGAGAACCTAAAGCCCGTGAGGCAGG
AGGCCGTGACGGGGCTCTTTTTCGATGCCTACATTCTTAGCTACTACACA
GAAAAAGTCTAGTGCCCTTCAACACTCGGTCCAGTTCTGGTTGGGCTCCG
AAGCAGCCAGGACGAGATTGGAGTGGCTGCTTTCACAGCAGTGGAACTCG
ATGATGCGTTGGATGGGGTCGCAGTGCAGTACCGTGAGACACAGGGGCAC
GAGTCGGCCGTGTTTATGTCGTATTTCAAACGACGGGTGACCTCCGATAC
CTGGCTGGGGGGGTCAAGAGCGGTTTAA
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Coding sequence (CDS) from alignment at scaffold_18:363250..363627+

>mRNA_6650 ID=mRNA_6650|Name=jgi.p|Nanoce1779_2|640918|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_18:363250..363627+ (Nannochloropsis oceanica)
ATGGTGGCCTTACCCGCCGTCGACCCAGCTTTCCGAGTCTCTGGCAGCAC
CCCGGGGCTCGAGCTATGGCGCATCGAGAACCTAAAGCCCGACGAGATTG
GAGTGGCTGCTTTCACAGCAGTGGAACTCGATGATGCGTTGGATGGGGTC
GCAGTGCAGTACCGTGAGACACAGGGGCACGAGTCGGCCGTGTTTATGTC
GTATTTCAAACGACGGGTGACCTCCGATACCTGGCTGGGGGGGTCAAGAG
CGGTTTAAATGGTGGCCTTACCCGCCGTCGACCCAGCTTTCCGAGTCTCT
GGCAGCACCCCGGGGCTCGAGCTATGGCGCATCGAGAACCTAAAGCCCGA
CGAGATTGGAGTGGCTGCTTTCACAGCAGTGGAACTCGATGATGCGTTGG
ATGGGGTCGCAGTGCAGTACCGTGAGACACAGGGGCACGAGTCGGCCGTG
TTTATGTCGTATTTCAAACGACGGGTGACCTCCGATACCTGGCTGGGGGG
GTCAAGAGCGGTTTAA
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Synonyms
Publications