jgi.p|Nanoce1779_2|597600, mRNA_6647 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597600
Unique NamemRNA_6647
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1640
Alignment locationscaffold_18:358835..360474 -

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Properties
Property NameValue
TranscriptId597686
TrackFilteredModels2
ProteinId597600
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:358835..360474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597600gene_6647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597600mRNA_6647-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6647CDS_6647Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6647 ID=mRNA_6647|Name=jgi.p|Nanoce1779_2|597600|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp
ACAGCCGCATGTATCAGTACCCTGCTGCCCGGGATGATTTGAAACGTGAC
CATGGCCAGATCCAGGGCCAGGGCCAGGGTCCAGGCAAGCCCCCATCATC
ATTTCGTACCCCTTCGCCCACTCCTCCCCGCCGCACGGTCGTCTGTGCCC
ACGCCACCCTGCCATGCGTCCGTAGTCAGGCCTCGGGTGCAGCGCCGCCC
CGAAAATCCCGCGTTACACCTCCAGATATGTCATTCTCGGCCCGAAGCCA
CCGTGCCGGCGTGGCGCACCGCGGCTTTGTTTATCCTCCCTTGAATCCGG
CAGGAGATATGTGCGATGCGAGTGATCGTCCTTTGCTTTGCATGAGCTTG
TCCAAGGACGAGACAGAGTTCGTAGTGGGGAGCGCAGACCATGCGTTATA
TGCGTATAGCCTGAAAACCTGTAAGCCTACCCGAAAATTATACACCAAGG
CGCACGGACACATTGATTGGGTCTCGTGCGTGGCACACATGGACGACGGT
CGAATTCTATCGGGAGGCGGGGACGGCAAGGTCTGCTGGTGGCCTGCAGC
GCGATCTTCATCGTTTACAATGCGGGGAGGAGGTTCCATGGCAGGGTTAA
GTGGCCAGTCTGCTACTTCCGGCAACAGCTTGACGGTGTCTGAGGACCTG
GACGGGCACGCGAGCGCAGTCAGCAAGATATTGCCTGTGCCCAACTCACA
AATGGCGTTCAGCAGTGGCTACGATGGGCTGATCAAGCTCTGGAATATGA
AATCGAAGCGAACCCTTACTTTTGATGCGGGAAGTGCGAGCCGAGGCATT
ATCATGACCGGCGACAGCCCCGGTAGTGGGAATGCTCTGGACCCCGTGAT
GGACTTTTGCTTTGACGAGGACAAAGAGCAGCTCATAAGTGGAACACGCA
AAGGCACGTGCAATGTCTGGGATTTACAGACGGCCAATCAAGTGGGTGCG
CTTAAGGCGGCACATCGCGGGCCCGTGTCGTGCATGATGCGATGGTCGGC
CTCGATTATCGTTACAGGGGGCCAAGACGGCACTGTGAAGGTCTTTGATA
CCCGACGGGGCATACCTCTCGTTGCACACAAGGTAAACTGCCACATCGAT
CCTACGCAGGGCACAACGGGTGCAGTATCGTGCTTGGAAAAGGCAGGTGG
ACTGTTGGCGACTGGCGGGGGGGATAATAGGGTTTGTCTGTTGGATCCGC
GCATGAATTTCAAAGCGCTCCATGTCTTCAGAAATCATCATGCCCCAGTG
TTCAGCTTGAAGTATACACTGGCGTCCGAAAGTCCAGTTTTGTTTACTGG
AGCGGGGGACGGGGTGCTGCATTGTGTGAACTTGTTATCGCGCCAGGAAC
TGTATAGTTTGCAACCAACTCAGGGGGCTGTTCGTGCGATTGCCTCGACA
ACGCACTTAGAGGAGAATAAGAAGCTTGTCGTGGCATGTGAGGATGGTAA
GGCTGTAATTTTTACGTTCTAAATACGTTTTGCTCTAGCGCTTAGGTCAA
AGGAAAGCCGTAGAGCGCGCGTCAAAAGCACAGCGAGAACGGACTATACA
GAAAGTTATGTAAGTTTTTTGCTCTTTTTATTTTTTGGGGGTTTTAAAGA
CCATAACGAGCCTTGTCACCGGCATAAACATATCTCCTTC
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protein sequence of jgi.p|Nanoce1779_2|597600

>mRNA_6647-protein ID=mRNA_6647-protein|Name=jgi.p|Nanoce1779_2|597600|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MYQYPAARDDLKRDHGQIQGQGQGPGKPPSSFRTPSPTPPRRTVVCAHAT
LPCVRSQASGAAPPRKSRVTPPDMSFSARSHRAGVAHRGFVYPPLNPAGD
MCDASDRPLLCMSLSKDETEFVVGSADHALYAYSLKTCKPTRKLYTKAHG
HIDWVSCVAHMDDGRILSGGGDGKVCWWPAARSSSFTMRGGGSMAGLSGQ
SATSGNSLTVSEDLDGHASAVSKILPVPNSQMAFSSGYDGLIKLWNMKSK
RTLTFDAGSASRGIIMTGDSPGSGNALDPVMDFCFDEDKEQLISGTRKGT
CNVWDLQTANQVGALKAAHRGPVSCMMRWSASIIVTGGQDGTVKVFDTRR
GIPLVAHKVNCHIDPTQGTTGAVSCLEKAGGLLATGGGDNRVCLLDPRMN
FKALHVFRNHHAPVFSLKYTLASESPVLFTGAGDGVLHCVNLLSRQELYS
LQPTQGAVRAIASTTHLEENKKLVVACEDGKAVIFTF*
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mRNA from alignment at scaffold_18:358835..360474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6647 ID=mRNA_6647|Name=jgi.p|Nanoce1779_2|597600|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp|location=Sequence derived from alignment at scaffold_18:358835..360474- (Nannochloropsis oceanica)
ACAGCCGCATGTATCAGTACCCTGCTGCCCGGGATGATTTGAAACGTGAC
CATGGCCAGATCCAGGGCCAGGGCCAGGGTCCAGGCAAGCCCCCATCATC
ATTTCGTACCCCTTCGCCCACTCCTCCCCGCCGCACGGTCGTCTGTGCCC
ACGCCACCCTGCCATGCGTCCGTAGTCAGGCCTCGGGTGCAGCGCCGCCC
CGAAAATCCCGCGTTACACCTCCAGATATGTCATTCTCGGCCCGAAGCCA
CCGTGCCGGCGTGGCGCACCGCGGCTTTGTTTATCCTCCCTTGAATCCGG
CAGGAGATATGTGCGATGCGAGTGATCGTCCTTTGCTTTGCATGAGCTTG
TCCAAGGACGAGACAGAGTTCGTAGTGGGGAGCGCAGACCATGCGTTATA
TGCGTATAGCCTGAAAACCTGTAAGCCTACCCGAAAATTATACACCAAGG
CGCACGGACACATTGATTGGGTCTCGTGCGTGGCACACATGGACGACGGT
CGAATTCTATCGGGAGGCGGGGACGGCAAGGTCTGCTGGTGGCCTGCAGC
GCGATCTTCATCGTTTACAATGCGGGGAGGAGGTTCCATGGCAGGGTTAA
GTGGCCAGTCTGCTACTTCCGGCAACAGCTTGACGGTGTCTGAGGACCTG
GACGGGCACGCGAGCGCAGTCAGCAAGATATTGCCTGTGCCCAACTCACA
AATGGCGTTCAGCAGTGGCTACGATGGGCTGATCAAGCTCTGGAATATGA
AATCGAAGCGAACCCTTACTTTTGATGCGGGAAGTGCGAGCCGAGGCATT
ATCATGACCGGCGACAGCCCCGGTAGTGGGAATGCTCTGGACCCCGTGAT
GGACTTTTGCTTTGACGAGGACAAAGAGCAGCTCATAAGTGGAACACGCA
AAGGCACGTGCAATGTCTGGGATTTACAGACGGCCAATCAAGTGGGTGCG
CTTAAGGCGGCACATCGCGGGCCCGTGTCGTGCATGATGCGATGGTCGGC
CTCGATTATCGTTACAGGGGGCCAAGACGGCACTGTGAAGGTCTTTGATA
CCCGACGGGGCATACCTCTCGTTGCACACAAGGTAAACTGCCACATCGAT
CCTACGCAGGGCACAACGGGTGCAGTATCGTGCTTGGAAAAGGCAGGTGG
ACTGTTGGCGACTGGCGGGGGGGATAATAGGGTTTGTCTGTTGGATCCGC
GCATGAATTTCAAAGCGCTCCATGTCTTCAGAAATCATCATGCCCCAGTG
TTCAGCTTGAAGTATACACTGGCGTCCGAAAGTCCAGTTTTGTTTACTGG
AGCGGGGGACGGGGTGCTGCATTGTGTGAACTTGTTATCGCGCCAGGAAC
TGTATAGTTTGCAACCAACTCAGGGGGCTGTTCGTGCGATTGCCTCGACA
ACGCACTTAGAGGAGAATAAGAAGCTTGTCGTGGCATGTGAGGATGGTAA
GGCTGTAATTTTTACGTTCTAAATACGTTTTGCTCTAGCGCTTAGGTCAA
AGGAAAGCCGTAGAGCGCGCGTCAAAAGCACAGCGAGAACGGACTATACA
GAAAGTTATGTAAGTTTTTTGCTCTTTTTATTTTTTGGGGGTTTTAAAGA
CCATAACGAGCCTTGTCACCGGCATAAACATATCTCCTTC
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Coding sequence (CDS) from alignment at scaffold_18:358835..360474-

>mRNA_6647 ID=mRNA_6647|Name=jgi.p|Nanoce1779_2|597600|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_18:358835..360474- (Nannochloropsis oceanica)
ATGTATCAGTACCCTGCTGCCCGGGATGATTTGAAACGTGACCATGGCCA
GATCCAGGGCCAGGGCCAGGGTCCAGGCAAGCCCCCATCATCATTTCGTA
CCCCTTCGCCCACTCCTCCCCGCCGCACGGTCGTCTGTGCCCACGCCACC
CTGCCATGCGTCCGTAGTCAGGCCTCGGGTGCAGCGCCGCCCCGAAAATC
CCGCGTTACACCTCCAGATATGTCATTCTCGGCCCGAAGCCACCGTGCCG
GCGTGGCGCACCGCGGCTTTGTTTATCCTCCCTTGAATCCGGCAGGAGAT
ATGTGCGATGCGAGTGATCGTCCTTTGCTTTGCATGAGCTTGTCCAAGGA
CGAGACAGAGTTCGTAGTGGGGAGCGCAGACCATGCGTTATATGCGTATA
GCCTGAAAACCTGTAAGCCTACCCGAAAATTATACACCAAGGCGCACGGA
CACATTGATTGGGTCTCGTGCGTGGCACACATGGACGACGGTCGAATTCT
ATCGGGAGGCGGGGACGGCAAGGTCTGCTGGTGGCCTGCAGCGCGATCTT
CATCGTTTACAATGCGGGGAGGAGGTTCCATGGCAGGGTTAAGTGGCCAG
TCTGCTACTTCCGGCAACAGCTTGACGGTGTCTGAGGACCTGGACGGGCA
CGCGAGCGCAGTCAGCAAGATATTGCCTGTGCCCAACTCACAAATGGCGT
TCAGCAGTGGCTACGATGGGCTGATCAAGCTCTGGAATATGAAATCGAAG
CGAACCCTTACTTTTGATGCGGGAAGTGCGAGCCGAGGCATTATCATGAC
CGGCGACAGCCCCGGTAGTGGGAATGCTCTGGACCCCGTGATGGACTTTT
GCTTTGACGAGGACAAAGAGCAGCTCATAAGTGGAACACGCAAAGGCACG
TGCAATGTCTGGGATTTACAGACGGCCAATCAAGTGGGTGCGCTTAAGGC
GGCACATCGCGGGCCCGTGTCGTGCATGATGCGATGGTCGGCCTCGATTA
TCGTTACAGGGGGCCAAGACGGCACTGTGAAGGTCTTTGATACCCGACGG
GGCATACCTCTCGTTGCACACAAGGTAAACTGCCACATCGATCCTACGCA
GGGCACAACGGGTGCAGTATCGTGCTTGGAAAAGGCAGGTGGACTGTTGG
CGACTGGCGGGGGGGATAATAGGGTTTGTCTGTTGGATCCGCGCATGAAT
TTCAAAGCGCTCCATGTCTTCAGAAATCATCATGCCCCAGTGTTCAGCTT
GAAGTATACACTGGCGTCCGAAAGTCCAGTTTTGTTTACTGGAGCGGGGG
ACGGGGTGCTGCATTGTGTGAACTTGTTATCGCGCCAGGAACTGTATAGT
TTGCAACCAACTCAGGGGGCTGTTCGTGCGATTGCCTCGACAACGCACTT
AGAGGAGAATAAGAAGCTTGTCGTGGCATGTGAGGATGGTAAGGCTGTAA
TTTTTACGTTCTAA
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Synonyms
Publications