jgi.p|Nanoce1779_2|567666, mRNA_6644 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567666
Unique NamemRNA_6644
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length582
Alignment locationscaffold_18:350342..351149 +

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Properties
Property NameValue
TranscriptId567752
TrackFilteredModels2
ProteinId567666
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:350342..351149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567666gene_6644Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567666mRNA_6644-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6644CDS_6644Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6644 ID=mRNA_6644|Name=jgi.p|Nanoce1779_2|567666|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGGAAGGGTCGCGTACTGCGAGGGGCGTTCTCCT
CGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAAG
CCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGGG
CTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGCA
TCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCG
AAGGAGGTTGCTTGTATCCAGGAGAAGGCGGCGACGGAGATTGCTCGTAT
CGAAAGCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGGTTGCTC
GTATCGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTA
GAGCGGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTATGAGCC
CTATCAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACG
GAGTATCCGAGGAGGATGAGAAGAAGGGCTAG
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protein sequence of jgi.p|Nanoce1779_2|567666

>mRNA_6644-protein ID=mRNA_6644-protein|Name=jgi.p|Nanoce1779_2|567666|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MLWSSATKAGAMVWRGVVASRSGKGRVLRGAFSSATDTGARTSSRGESGK
PLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESKSEVARIQEKAA
KEVACIQEKAATEIARIESDRARIQDKAATEVARIESDRKLSELFWKAEV
ERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKKG*
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mRNA from alignment at scaffold_18:350342..351149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6644 ID=mRNA_6644|Name=jgi.p|Nanoce1779_2|567666|organism=Nannochloropsis oceanica|type=mRNA|length=808bp|location=Sequence derived from alignment at scaffold_18:350342..351149+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGGGGGGGGGGGGGGGGGACGTTT
GGTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTG
CACGTCTATCTCGTTTGAGGTGTAATCTGTGTTGTGCGGACAAGGGCCGG
TGCCAAGGTGCTCATGCACGAGCGCATTCATACACGCCGACAGGGAAGGG
TCGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCA
CGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCC
ATTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCA
TCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGG
TTGCTCGTATCCAGGAGAAGGCGGCGAAGGAGGTTGCTTGTATCCAGGAG
AAGGCGGCGACGGAGATTGCTCGTATCGAAAGCGACCGAGCGCGTATCCA
GGACAAGGCGGCGACGGAGGTTGCTCGTATCGAAAGCGACCGAAAGTTGT
CAGAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCAA
CTTGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGAC
AAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGA
AGGGCTAG
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Coding sequence (CDS) from alignment at scaffold_18:350342..351149+

>mRNA_6644 ID=mRNA_6644|Name=jgi.p|Nanoce1779_2|567666|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_18:350342..351149+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGGAAGGGTCGCGTACTGCGAGGGGCGTTCTCCT
CGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAAG
CCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGGG
CTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGCA
TCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCG
AAGGAGGTTGCTTGTATCCAGGAGAAGGCGGCGACGGAGATTGCTCGTAT
CGAAAGCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGGTTGCTC
GTATCGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTA
GAGCGGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTATGAGCC
CTATCAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACG
GAGTATCCGAGGAGGATGAGAAGAAGGGCTAGATGCTTTGGAGCTCTGCC
ACGAAGGCTGGAGCCATGGTGTGGAGAGGGGTTGTGGCTTCGCGTTCAGG
GAAGGGTCGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGG
CGCGCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTAC
CAGCCCATTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGT
CCACCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGT
CGGAGGTTGCTCGTATCCAGGAGAAGGCGGCGAAGGAGGTTGCTTGTATC
CAGGAGAAGGCGGCGACGGAGATTGCTCGTATCGAAAGCGACCGAGCGCG
TATCCAGGACAAGGCGGCGACGGAGGTTGCTCGTATCGAAAGCGACCGAA
AGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGAC
CTCCAACTTGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTC
GAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATG
AGAAGAAGGGCTAG
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Synonyms
Publications