jgi.p|Nanoce1779_2|567663, mRNA_6641 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567663
Unique NamemRNA_6641
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_18:345137..345856 +

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Properties
Property NameValue
TranscriptId567749
TrackFilteredModels2
ProteinId567663
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:345137..345856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567663gene_6641Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567663mRNA_6641-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6641CDS_6641Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6641 ID=mRNA_6641|Name=jgi.p|Nanoce1779_2|567663|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGATGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGGGGGGGGGGGGGGGGACGTTTG
GTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGC
ACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGT
GCCAAGGTGCTCATGCACGAGCACATTCATACACGCCGACAGGGAAGGGA
CGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCAC
GAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCA
TTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCAT
CTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGT
TGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAGGGCG
ACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAG
CACGACCTCCAACTTGCGTACACGGAAGACTATGAGCCCTATCAGGCCGC
AGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGG
AGGATGAGAAGAAGGGCTAG
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protein sequence of jgi.p|Nanoce1779_2|567663

>mRNA_6641-protein ID=mRNA_6641-protein|Name=jgi.p|Nanoce1779_2|567663|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLWSSATKAGAMMWRGVVASRSGKVAYCNAFWKEGLVAIGKGWGGGGGRL
VHATAYCPRDVGSFLSARLSRLRCNLCCADKGRCQGAHARAHSYTPTGKG
RVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHH
LDQMEIKRIESESKSEVARIQEKAATEVARIEGDRKLSELFWKAEVERYK
HDLQLAYTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKKG*
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mRNA from alignment at scaffold_18:345137..345856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6641 ID=mRNA_6641|Name=jgi.p|Nanoce1779_2|567663|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at scaffold_18:345137..345856+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGATGTGGAGAGGGGT TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG AGGGCTTGGTGGCTATTGGTAAGGGGTGGGGGGGGGGGGGGGGACGTTTG GTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGC ACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGT GCCAAGGTGCTCATGCACGAGCACATTCATACACGCCGACAGGGAAGGGA CGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCAC GAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCA TTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCAT CTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGT TGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAGGGCG ACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAG CACGACCTCCAACTTGCGTACACGGAAGACTATGAGCCCTATCAGGCCGC AGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGG AGGATGAGAAGAAGGGCTAG
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Coding sequence (CDS) from alignment at scaffold_18:345137..345856+

>mRNA_6641 ID=mRNA_6641|Name=jgi.p|Nanoce1779_2|567663|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_18:345137..345856+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGATGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGGGGGGGGGGGGGGGGACGTTTG
GTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGC
ACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGT
GCCAAGGTGCTCATGCACGAGCACATTCATACACGCCGACAGGGAAGGGA
CGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCAC
GAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCA
TTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCAT
CTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGT
TGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAGGGCG
ACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAG
CACGACCTCCAACTTGCGTACACGGAAGACTATGAGCCCTATCAGGCCGC
AGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGG
AGGATGAGAAGAAGGGCTAG
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Synonyms
Publications