jgi.p|Nanoce1779_2|567658, mRNA_6638 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567658
Unique NamemRNA_6638
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length315
Alignment locationscaffold_18:336364..336678 +

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Properties
Property NameValue
TranscriptId567744
TrackFilteredModels2
ProteinId567658
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:336364..336678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567658gene_6638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567658mRNA_6638-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6638CDS_6638Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6638 ID=mRNA_6638|Name=jgi.p|Nanoce1779_2|567658|organism=Nannochloropsis oceanica|type=mRNA|length=315bp
ATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGATTGCTCGTAT
CCAGGAGAAGGCGGCGTCGGAGGTTGCTCGTATTGAGGGCGACTGTGCGC
GAATCCAGGGTGAGAGCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGA
AAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGA
CCTCCAACTTGCGCACACGGAAGACTATGGGCCCTATCAGGCGGCAGTTT
CGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGAT
GAGAAGAAGGGCTAG
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protein sequence of jgi.p|Nanoce1779_2|567658

>mRNA_6638-protein ID=mRNA_6638-protein|Name=jgi.p|Nanoce1779_2|567658|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MEIKRIESESKSEIARIQEKAASEVARIEGDCARIQGESKSEIARIESDR
KLSELFWKAEVERYKHDLQLAHTEDYGPYQAAVSKTRNKTRGGNGVSEED
EKKG*
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mRNA from alignment at scaffold_18:336364..336678+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6638 ID=mRNA_6638|Name=jgi.p|Nanoce1779_2|567658|organism=Nannochloropsis oceanica|type=mRNA|length=315bp|location=Sequence derived from alignment at scaffold_18:336364..336678+ (Nannochloropsis oceanica)
ATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGATTGCTCGTAT
CCAGGAGAAGGCGGCGTCGGAGGTTGCTCGTATTGAGGGCGACTGTGCGC
GAATCCAGGGTGAGAGCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGA
AAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGA
CCTCCAACTTGCGCACACGGAAGACTATGGGCCCTATCAGGCGGCAGTTT
CGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGAT
GAGAAGAAGGGCTAG
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Coding sequence (CDS) from alignment at scaffold_18:336364..336678+

>mRNA_6638 ID=mRNA_6638|Name=jgi.p|Nanoce1779_2|567658|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_18:336364..336678+ (Nannochloropsis oceanica)
ATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGATTGCTCGTAT
CCAGGAGAAGGCGGCGTCGGAGGTTGCTCGTATTGAGGGCGACTGTGCGC
GAATCCAGGGTGAGAGCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGA
AAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGA
CCTCCAACTTGCGCACACGGAAGACTATGGGCCCTATCAGGCGGCAGTTT
CGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGAT
GAGAAGAAGGGCTAG
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Synonyms
Publications