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Properties
| Property Name | Value |
|---|
| TranscriptId | 597646 |
| Track | FilteredModels2 |
| ProteinId | 597560 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:334858..336627 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6637 ID=mRNA_6637|Name=jgi.p|Nanoce1779_2|597560|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
ATTTCTTGTCTTCGAAACTGCCGCCTGATAGGGCCCATAGTCTTCCGTGT
GCGCAAGTTGGAGGTCGTGCTTGTACCGCTCTACCTCGGCCTTCCAGAAA
AGCTCTGACAACTTTCGGTCGCTTTCGATACGAGCAATCTCCGACTTGCT
CTCACCCTGGATACGAGCAACCTCCGACGCCGCCTTCTCCTGGATACGAG
CAATCTCCGACTTGCTCTCACTCTCGATGCGCTTTATCTCCATCTGGTCA
AGATGGTGGACGCCGTAAGCGGTAGAGCCCGCAACCGCAGCCACCACACC
AATGGGCTGGTAATCTCCCTTCAAGGGCTTTCCAGACTCCCCTCTACTGC
TCGTGCGCGCCCCCGTGTCGGTAGCCGAGGAGAACGCCCCTCGCAGTACG
CGTCCCTTCCCTGTCGGCGTGTATGAATGTGCTCGTGCATGAGCACCTTG
GCACCGGCCCTTGTCCGCACAACACAGATTGCACCTCAAACGAGATAGAC
GTGCAGATAAAAACGAACCAACATCCCTCGGGCAGTATGCGGTCGCGTGC
ACCAAACGTCCCCCCCCCCCCCCTCCCAACACCCCTTACCAATAGCCACC
AAGCCCTCCTTCCAAAATGCATTACAATATGCCACCTTACCTGAACGCGA
AGCCACAACCCCTCTCCACACCATGGCTCCAGCCTTCGTGGCAGAGCTCC
AAAGCATGCTCCCAACGGTCCCTCTGGTGGTCGTGGTTGATGGAACCAGC
AAGCAAGCAGTGCATGTTGTTATGTGGGAAGGGACGGTGGATGTGTATGA
GGTCGGTTTCCAAGCGCACAAAGAAGTATGCAAACCTGCCACAGCTTTAC
CCTCAAGCTCTCACTTCACACACGCTAGACCACAGAATAGAGGCCGCGCG
CGGTGCCCATTACTCGTGCCAGAGGGAAAGACCAAAAAGGAGACGAGGTG
GCTACCTTCATGATGATGCATGGAGAGCAACGAACCCAGAATTCGAGGCC
CCCACCAACACCAAGCCAGCCATAGACACCGACGCCGGCAAAACTGGAAG
GGAAAAAAAACAAGAGAGCCACGTGACAATCCTGTACGTGTGCGTGGCGG
TGGTGGTGGTACACAATCACGTGCCGCACACAAGACTACGGCTAGGGGAG
TAAAGCAGGACTAAGGAGGATCCACAAACTTCTGCGGCCGCGGCGATAGG
GCTTGTTGACCTTACGTGCCGTCTTGCCTCCTGCTGCGTACACAACACAC
AAACAGGTCTTGATGCTCGCCTTATTTACAACACAACGCCATCTCCAGCA
CGGCTCTGTGGTGGCATTTCCTTGGTCATCAGGAGCATTTACCCAGGTCC
ACGACCCCGGTTTCATAAAATAACCTCCTCCCCCTTCTCCTACCGGCACC
ATCGGCCTCCGAGGCCCCCTCCTTCGACAAACAGCCGCGCTCTGCTTGCA
GGCGGCGGGGGCTTGATTGCACAAGGTGGAAGCGGAGTTGGCGGCGTTTG
TGCGGAAGAGATACATGGAACAAGCGCACATCAACTCAGAAGGGAGAAAA
GAAGAGCTCGCTGGGTACATGTTTTTGGGAGCCCTCGTTATTGCATTGGT
GGAGTATGAGTGCCACCCCCTACTACCCCCGTCTCTCCTTTACAACCCCA
GCCACTCTACATGTCTTTGCTTTGAACGTGTATTTTACATCTTCCTATTA
AGCTACATAGGCTACCAACAGCTAGCCCTTCTTCTCATCCTCCTCGGAT back to topprotein sequence of jgi.p|Nanoce1779_2|597560 >mRNA_6637-protein ID=mRNA_6637-protein|Name=jgi.p|Nanoce1779_2|597560|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MHYNMPPYLNAKPQPLSTPWLQPSWQSSKACSQRSLWWSWLMEPASKQCM
LLCGKGRWMCMRSVSKRTKKYANLPQLYPQALTSHTLDHRIEAARGAHYS
CQRERPKRRRGGYLHDDAWRATNPEFEAPTNTKPAIDTDAGKTGREKKQE
SHVTILYVCVAVVVVHNHVPHTRLRLGE* back to topmRNA from alignment at scaffold_18:334858..336627- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6637 ID=mRNA_6637|Name=jgi.p|Nanoce1779_2|597560|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at scaffold_18:334858..336627- (Nannochloropsis oceanica)
ATTTCTTGTCTTCGAAACTGCCGCCTGATAGGGCCCATAGTCTTCCGTGT
GCGCAAGTTGGAGGTCGTGCTTGTACCGCTCTACCTCGGCCTTCCAGAAA
AGCTCTGACAACTTTCGGTCGCTTTCGATACGAGCAATCTCCGACTTGCT
CTCACCCTGGATTCGCGCACAGTCGCCCTCAATACGAGCAACCTCCGACG
CCGCCTTCTCCTGGATACGAGCAATCTCCGACTTGCTCTCACTCTCGATG
CGCTTTATCTCCATCTGGTCAAGATGGTGGACGCCGTAAGCGGTAGAGCC
CGCAACCGCAGCCACCACACCAATGGGCTGGTAATCTCCCTTCAAGGGCT
TTCCAGACTCCCCTCTACTGCTCGTGCGCGCCCCCGTGTCGGTAGCCGAG
GAGAACGCCCCTCGCAGTACGCGTCCCTTCCCTGTCGGCGTGTATGAATG
TGCTCGTGCATGAGCACCTTGGCACCGGCCCTTGTCCGCACAACACAGAT
TGCACCTCAAACGAGATAGACGTGCAGATAAAAACGAACCAACATCCCTC
GGGCAGTATGCGGTCGCGTGCACCAAACGTCCCCCCCCCCCCCCTCCCAA
CACCCCTTACCAATAGCCACCAAGCCCTCCTTCCAAAATGCATTACAATA
TGCCACCTTACCTGAACGCGAAGCCACAACCCCTCTCCACACCATGGCTC
CAGCCTTCGTGGCAGAGCTCCAAAGCATGCTCCCAACGGTCCCTCTGGTG
GTCGTGGTTGATGGAACCAGCAAGCAAGCAGTGCATGTTGTTATGTGGGA
AGGGACGGTGGATGTGTATGAGGTCGGTTTCCAAGCGCACAAAGAAGTAT
GCAAACCTGCCACAGCTTTACCCTCAAGCTCTCACTTCACACACGCTAGA
CCACAGAATAGAGGCCGCGCGCGGTGCCCATTACTCGTGCCAGAGGGAAA
GACCAAAAAGGAGACGAGGTGGCTACCTTCATGATGATGCATGGAGAGCA
ACGAACCCAGAATTCGAGGCCCCCACCAACACCAAGCCAGCCATAGACAC
CGACGCCGGCAAAACTGGAAGGGAAAAAAAACAAGAGAGCCACGTGACAA
TCCTGTACGTGTGCGTGGCGGTGGTGGTGGTACACAATCACGTGCCGCAC
ACAAGACTACGGCTAGGGGAGTAAAGCAGGACTAAGGAGGATCCACAAAC
TTCTGCGGCCGCGGCGATAGGGCTTGTTGACCTTACGTGCCGTCTTGCCT
CCTGCTGCGTACACAACACACAAACAGGTCTTGATGCTCGCCTTATTTAC
AACACAACGCCATCTCCAGCACGGCTCTGTGGTGGCATTTCCTTGGTCAT
CAGGAGCATTTACCCAGGTCCACGACCCCGGTTTCATAAAATAACCTCCT
CCCCCTTCTCCTACCGGCACCATCGGCCTCCGAGGCCCCCTCCTTCGACA
AACAGCCGCGCTCTGCTTGCAGGCGGCGGGGGCTTGATTGCACAAGGTGG
AAGCGGAGTTGGCGGCGTTTGTGCGGAAGAGATACATGGAACAAGCGCAC
ATCAACTCAGAAGGGAGAAAAGAAGAGCTCGCTGGGTACATGTTTTTGGG
AGCCCTCGTTATTGCATTGGTGGAGTATGAGTGCCACCCCCTACTACCCC
CGTCTCTCCTTTACAACCCCAGCCACTCTACATGTCTTTGCTTTGAACGT
GTATTTTACATCTTCCTATTAAGCTACATAGGCTACCAACAGCTAGCCCT
TCTTCTCATCCTCCTCGGAT back to topCoding sequence (CDS) from alignment at scaffold_18:334858..336627- >mRNA_6637 ID=mRNA_6637|Name=jgi.p|Nanoce1779_2|597560|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_18:334858..336627- (Nannochloropsis oceanica)
ATGCATTACAATATGCCACCTTACCTGAACGCGAAGCCACAACCCCTCTC
CACACCATGGCTCCAGCCTTCGTGGCAGAGCTCCAAAGCATGCTCCCAAC
GGTCCCTCTGGTGGTCGTGGTTGATGGAACCAGCAAGCAAGCAGTGCATG
TTGTTATGTGGGAAGGGACGGTGGATGTGTATGAGGTCGGTTTCCAAGCG
CACAAAGAAGTATGCAAACCTGCCACAGCTTTACCCTCAAGCTCTCACTT
CACACACGCTAGACCACAGAATAGAGGCCGCGCGCGGTGCCCATTACTCG
TGCCAGAGGGAAAGACCAAAAAGGAGACGAGGTGGCTACCTTCATGATGA
TGCATGGAGAGCAACGAACCCAGAATTCGAGGCCCCCACCAACACCAAGC
CAGCCATAGACACCGACGCCGGCAAAACTGGAAGGGAAAAAAAACAAGAG
AGCCACGTGACAATCCTGTACGTGTGCGTGGCGGTGGTGGTGGTACACAA
TCACGTGCCGCACACAAGACTACGGCTAGGGGAGTAA back to top
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