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Properties
| Property Name | Value |
|---|
| TranscriptId | 597642 |
| Track | FilteredModels2 |
| ProteinId | 597556 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:333067..334857 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6636 ID=mRNA_6636|Name=jgi.p|Nanoce1779_2|597556|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp
ACTCCGTTTCCTCCCCTTGTTTTATTTCTTGTCTTCGAAACTGCCGCCTG
ATAGGGCTCATAGTCTTCCGTGTGCGCAAGTTGGAGGTCGTGCTTGTACC
GCTCTACCTCGGCCTTCCAGAAAAGCTCTGACAACTTTCGGTCGCTTTCG
ATACGAGCAACCTCCGTCGCCGCCTTGTCCTGGATACGAGCAACCTCCGA
CTTGCTCTCACCCTGGATACGAGCAACCTCCGACTTGCTCTCACTCTCGA
TGCGCTTTATCTCCATCTGGTCAAGATGGTAGACGCCGTAAGCGGTAGAG
CCCGCAACCGCAGCCACTACACCAATGGGCTGGTAATCTCCCTTCAAGGG
CTTTCCAGACTCCCCTCTACTGCTCGTGCGCGCCCCCGTGTCGGTAGCCG
AGGAGAATGCCCCTCGCAGTACGCGTCCCTTCCCTGTCGGCGTGTATGAA
TGTGCTCGTGCATGAGCACCTTGGCACCGGCCCTTGTCCGCACAACACAG
ATTGCACCTCAAACGAGATAGACGTGCAGATAAAAACGAACCAACATCCC
TCGGGCAGTATGCGGTCGCGTGCACCAAACGTCCCCCCCCCCCACCCCCA
CCCCTTACCAATAGCCACCAAGCCCTCCTTCCAAAATGCATTACAATATG
CCACCTTACCTGAACGCGAAGCCACAACCCCTCTCCACACCATGGCTCCA
GCCTTCGTGGCAGAGCTCCAAAGCATGCTCCCAACGGTCCCTCTGGTGGT
CGTGGTTGATGGAACCAGCAAGCAAGCAGTGCATGTTGTTATGTGGGAAG
GGACGGTGGATGTGTATGAGGTCGGTTTCCAAGCGCACAAAGAAGTATGC
AAACCTGCCACAGCTTTACCCTCAAGCTCTCACTTCACACACGCTAGACC
ACAGAATAGAGGCCGCGCGCGGTGCCCATTACTCGTGCCAGAGGGAAAGA
CCAAAAAGGAGACGAGGTGGCTACCTTCATGATGATGCATGGAGAGCAAC
GAACCCAGAATTCGAGGCCCCCACCAACACCAAGCCAGCCATAGACACCG
ACGCCGGCAAAACTGGAAGGGAAAAAAAACAAGAGAGCCACGTGACAATC
CTGTACGTGTGCGTGGCGGTGGTGGTGGTACACAATCACGTGCCGCACAC
AAGACTACGGCTAGGGGAGTAAAGCAGGACTAAGGAGGATCCACAAACTT
CTGCGGCCGCGGCGATAGGGCTTGTTGACCTTACGTGCCGTCTTGCCTCC
TGCTGCGTACACAACACACAAACAGGTCTTGATGCTCGCCTTATTTACAA
CACAACGCCATCTCCAGCACGGCTCTGTGGTGGCATTTCCTTGGTCATCA
GGAGCATTTACCCAGGTCCACGACCCCGGTTTCATAAAATAACCTCCTCC
CCCTTCTCCTACCGGCACCATCGGCCTCCGAGGCCCCCTCCTTCGACAAA
CAGCCGCGCTCTGCTTGCAGGCGGCGGGGGCTTGATTGCACAAGGTGGAA
GCGGAGTTGGCGGCGTTTGTGCGGAAGAGATACATGGAACAAGCGCACAT
CAACTCAGAAGGGAGAAAAGAAGAGCTCGCTGGGTACATGTTTTTGGGAG
CCCTCGTTATTGCATTGGTGGAGTATGAGTACCACCCCCTACTACCCCCA
TCTCTCCTTTACAACCCCAGCCACTCTACATGTCTTTGCTTTGAACGTGT
ATTTTACATCTTCCTATTAAGCTACATAGGCTACCAACAGCTAGCCCTTC
TTCTCATCCTCCTCGGATACTCCGTTTCCTCCCCTTGTTTT back to topprotein sequence of jgi.p|Nanoce1779_2|597556 >mRNA_6636-protein ID=mRNA_6636-protein|Name=jgi.p|Nanoce1779_2|597556|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MHYNMPPYLNAKPQPLSTPWLQPSWQSSKACSQRSLWWSWLMEPASKQCM
LLCGKGRWMCMRSVSKRTKKYANLPQLYPQALTSHTLDHRIEAARGAHYS
CQRERPKRRRGGYLHDDAWRATNPEFEAPTNTKPAIDTDAGKTGREKKQE
SHVTILYVCVAVVVVHNHVPHTRLRLGE* back to topmRNA from alignment at scaffold_18:333067..334857- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6636 ID=mRNA_6636|Name=jgi.p|Nanoce1779_2|597556|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at scaffold_18:333067..334857- (Nannochloropsis oceanica)
ACTCCGTTTCCTCCCCTTGTTTTATTTCTTGTCTTCGAAACTGCCGCCTG
ATAGGGCTCATAGTCTTCCGTGTGCGCAAGTTGGAGGTCGTGCTTGTACC
GCTCTACCTCGGCCTTCCAGAAAAGCTCTGACAACTTTCGGTCGCTTTCG
ATACGAGCAACCTCCGTCGCCGCCTTGTCCTGGATACGAGCAACCTCCGA
CTTGCTCTCACCCTGGATACGAGCAACCTCCGACTTGCTCTCACTCTCGA
TGCGCTTTATCTCCATCTGGTCAAGATGGTAGACGCCGTAAGCGGTAGAG
CCCGCAACCGCAGCCACTACACCAATGGGCTGGTAATCTCCCTTCAAGGG
CTTTCCAGACTCCCCTCTACTGCTCGTGCGCGCCCCCGTGTCGGTAGCCG
AGGAGAATGCCCCTCGCAGTACGCGTCCCTTCCCTGTCGGCGTGTATGAA
TGTGCTCGTGCATGAGCACCTTGGCACCGGCCCTTGTCCGCACAACACAG
ATTGCACCTCAAACGAGATAGACGTGCAGATAAAAACGAACCAACATCCC
TCGGGCAGTATGCGGTCGCGTGCACCAAACGTCCCCCCCCCCCACCCCCA
CCCCTTACCAATAGCCACCAAGCCCTCCTTCCAAAATGCATTACAATATG
CCACCTTACCTGAACGCGAAGCCACAACCCCTCTCCACACCATGGCTCCA
GCCTTCGTGGCAGAGCTCCAAAGCATGCTCCCAACGGTCCCTCTGGTGGT
CGTGGTTGATGGAACCAGCAAGCAAGCAGTGCATGTTGTTATGTGGGAAG
GGACGGTGGATGTGTATGAGGTCGGTTTCCAAGCGCACAAAGAAGTATGC
AAACCTGCCACAGCTTTACCCTCAAGCTCTCACTTCACACACGCTAGACC
ACAGAATAGAGGCCGCGCGCGGTGCCCATTACTCGTGCCAGAGGGAAAGA
CCAAAAAGGAGACGAGGTGGCTACCTTCATGATGATGCATGGAGAGCAAC
GAACCCAGAATTCGAGGCCCCCACCAACACCAAGCCAGCCATAGACACCG
ACGCCGGCAAAACTGGAAGGGAAAAAAAACAAGAGAGCCACGTGACAATC
CTGTACGTGTGCGTGGCGGTGGTGGTGGTACACAATCACGTGCCGCACAC
AAGACTACGGCTAGGGGAGTAAAGCAGGACTAAGGAGGATCCACAAACTT
CTGCGGCCGCGGCGATAGGGCTTGTTGACCTTACGTGCCGTCTTGCCTCC
TGCTGCGTACACAACACACAAACAGGTCTTGATGCTCGCCTTATTTACAA
CACAACGCCATCTCCAGCACGGCTCTGTGGTGGCATTTCCTTGGTCATCA
GGAGCATTTACCCAGGTCCACGACCCCGGTTTCATAAAATAACCTCCTCC
CCCTTCTCCTACCGGCACCATCGGCCTCCGAGGCCCCCTCCTTCGACAAA
CAGCCGCGCTCTGCTTGCAGGCGGCGGGGGCTTGATTGCACAAGGTGGAA
GCGGAGTTGGCGGCGTTTGTGCGGAAGAGATACATGGAACAAGCGCACAT
CAACTCAGAAGGGAGAAAAGAAGAGCTCGCTGGGTACATGTTTTTGGGAG
CCCTCGTTATTGCATTGGTGGAGTATGAGTACCACCCCCTACTACCCCCA
TCTCTCCTTTACAACCCCAGCCACTCTACATGTCTTTGCTTTGAACGTGT
ATTTTACATCTTCCTATTAAGCTACATAGGCTACCAACAGCTAGCCCTTC
TTCTCATCCTCCTCGGATACTCCGTTTCCTCCCCTTGTTTT back to topCoding sequence (CDS) from alignment at scaffold_18:333067..334857- >mRNA_6636 ID=mRNA_6636|Name=jgi.p|Nanoce1779_2|597556|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_18:333067..334857- (Nannochloropsis oceanica)
ATGCATTACAATATGCCACCTTACCTGAACGCGAAGCCACAACCCCTCTC
CACACCATGGCTCCAGCCTTCGTGGCAGAGCTCCAAAGCATGCTCCCAAC
GGTCCCTCTGGTGGTCGTGGTTGATGGAACCAGCAAGCAAGCAGTGCATG
TTGTTATGTGGGAAGGGACGGTGGATGTGTATGAGGTCGGTTTCCAAGCG
CACAAAGAAGTATGCAAACCTGCCACAGCTTTACCCTCAAGCTCTCACTT
CACACACGCTAGACCACAGAATAGAGGCCGCGCGCGGTGCCCATTACTCG
TGCCAGAGGGAAAGACCAAAAAGGAGACGAGGTGGCTACCTTCATGATGA
TGCATGGAGAGCAACGAACCCAGAATTCGAGGCCCCCACCAACACCAAGC
CAGCCATAGACACCGACGCCGGCAAAACTGGAAGGGAAAAAAAACAAGAG
AGCCACGTGACAATCCTGTACGTGTGCGTGGCGGTGGTGGTGGTACACAA
TCACGTGCCGCACACAAGACTACGGCTAGGGGAGTAA back to top
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