jgi.p|Nanoce1779_2|640914, mRNA_6634 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|640914
Unique Name	mRNA_6634
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1650
Alignment location	scaffold_18:324918..326567 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	641000
Track	FilteredModels2
ProteinId	640914

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:324918..326567 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640914	gene_6634	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640914	mRNA_6634-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6634	CDS_6634	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:324918..326567+
coding sequence from alignment at scaffold_18:324918..326567+

mRNA sequence

>mRNA_6634 ID=mRNA_6634|Name=jgi.p|Nanoce1779_2|640914|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp
ATGGATGATGAGGAGAGCACGGCAGACTTCACCGAGGACATGATCGAGAC
GATGGCATCGGCCGCGGGCATGCATCTAATGCCCCCCCTGGTTACTTTGT
CCTTGAACGACGATGATGAGGAGGAAGAAAAGGGCAAGCCGAAAGCATGC
ACGCAACAGCACCTCTGCCTACGGATTGACGAAGCGGTCGAGGACGGCGA
CGACCATCTGCATGAATTTGACCCGACTGCACTTTCTTCCTGCACTTCCC
AAACGTCAAGAGCCAATAAATGCAAGGGCACGTGTGGCACGCTGAAAAAA
TTGCGGCCGGTCCTGCTGCTTTTGGTGGTGGTAACGACGTTCCTTGTGAG
CGGCAGCTACTTGGTAGTGCGGTACCGGGACAAGGTGTTGGAAGCTTCAG
AATACATTCGCCAGCAAGCCCCTCGTTCTGCCGTGTACTATGCTTTGATT
GTGGCTTTGTGGATAATCTTGTGCTTGCCTTCTACAATCATAGAGTTGCT
GGGTGGGGCAATATTTTCGTACCCTGTGGCGTTGCTGACGTTGACGGTGG
GCAAGCAGCTTGGATGCACGATTGCCTTTCTGATTGGGAAGGTCGTGGCG
TCTAGAGCCATACGGGACACATTGGGTCGGCCGCATCGTGTGTCTTCCTC
TACAATATTAGCGGCAGAGGGAAAGGGAGAGCGGAGCAATACTACTATTG
CGGTTGCTGGTAGTGATGAGCAGCAGAAAGCGTCTCAGGGAAGACGACGC
GGACGACAACCCGCCAGCGCCAGCGGCAGTGACAGCAGCAGTACCAAGCG
GGGCAGGTGGAGCAGCTCCAAACCTATGTCCAAGCGAAAGCGGACGATAC
AAGCCATGTTCTACGCCATGGAATGCCATCCGTGGAAGATCACGCTCCTC
CTCCGCTTCCTCCCCATCCCAATCAGTGTCAAAAATTACGGCATGGCCTG
CCTGCCTTGTCCGACACATGTATTTCTCATCTCCACCTTTGTTGCTTCCC
TTCCTTTCACCTTCATTTGGGTCAACCTAGGGGAGTCGACCAAGAGTTTG
TTGGAGGCACTAAGTGGCAAGGGGGAATCCATGGGAAAGCATGGGCTCTT
CGCACAGGAGATCGCTTTACTGGTGGTGGGCCTGCTGCTGCTGATACTGC
TTGTGGTGATATTGAAACGATACACGCATCGATACGCGGCCGTTTTGGAG
GCGGAGGAAACACCACGTTTGGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCCGTAGCGGAGCAGGGGGCGGGGGGAGGGCAGGATGGAC
ATAGCACGGTAAGGAGTAATTTGACGCTGTCGTCGATACCGACATGGACA
TTGACAGAGGAGGAGGGCGGGGACGAGGGAGGAAGGGAGGAAGGGGAGGA
AGATGAGGATGCGCGGAGTTGCTTCGGGTGGCGAAGACATAGTCGGGAGT
CATTCGTCGAGAGGGAGATCGTGGAGGGACGTGGGATCGCGGGAGGCGAG
GTGTCATTGGTGGTGGTGCCTTCTCTGATGAAAGCAACAGAGGAGACCAT
AAATGACAGGAAGAAGATGGGGAGGAGGGGGGAGGAAGAGGAGAAGGAGG
AGGAAGAAGTGGTCGGAAGTCCTTCTTGTAGTGTGGCATCCGTAGCTTAA

protein sequence of jgi.p|Nanoce1779_2|640914

>mRNA_6634-protein ID=mRNA_6634-protein|Name=jgi.p|Nanoce1779_2|640914|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MDDEESTADFTEDMIETMASAAGMHLMPPLVTLSLNDDDEEEEKGKPKAC
TQQHLCLRIDEAVEDGDDHLHEFDPTALSSCTSQTSRANKCKGTCGTLKK
LRPVLLLLVVVTTFLVSGSYLVVRYRDKVLEASEYIRQQAPRSAVYYALI
VALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCTIAFLIGKVVA
SRAIRDTLGRPHRVSSSTILAAEGKGERSNTTIAVAGSDEQQKASQGRRR
GRQPASASGSDSSSTKRGRWSSSKPMSKRKRTIQAMFYAMECHPWKITLL
LRFLPIPISVKNYGMACLPCPTHVFLISTFVASLPFTFIWVNLGESTKSL
LEALSGKGESMGKHGLFAQEIALLVVGLLLLILLVVILKRYTHRYAAVLE
AEETPRLAAAAAAAAAAAAAAVAEQGAGGGQDGHSTVRSNLTLSSIPTWT
LTEEEGGDEGGREEGEEDEDARSCFGWRRHSRESFVEREIVEGRGIAGGE
VSLVVVPSLMKATEETINDRKKMGRRGEEEEKEEEEVVGSPSCSVASVA*

mRNA from alignment at scaffold_18:324918..326567+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6634 ID=mRNA_6634|Name=jgi.p|Nanoce1779_2|640914|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at scaffold_18:324918..326567+ (Nannochloropsis oceanica)
ATGGATGATGAGGAGAGCACGGCAGACTTCACCGAGGACATGATCGAGAC
GATGGCATCGGCCGCGGGCATGCATCTAATGCCCCCCCTGGTTACTTTGT
CCTTGAACGACGATGATGAGGAGGAAGAAAAGGGCAAGCCGAAAGCATGC
ACGCAACAGCACCTCTGCCTACGGATTGACGAAGCGGTCGAGGACGGCGA
CGACCATCTGCATGAATTTGACCCGACTGCACTTTCTTCCTGCACTTCCC
AAACGTCAAGAGCCAATAAATGCAAGGGCACGTGTGGCACGCTGAAAAAA
TTGCGGCCGGTCCTGCTGCTTTTGGTGGTGGTAACGACGTTCCTTGTGAG
CGGCAGCTACTTGGTAGTGCGGTACCGGGACAAGGTGTTGGAAGCTTCAG
AATACATTCGCCAGCAAGCCCCTCGTTCTGCCGTGTACTATGCTTTGATT
GTGGCTTTGTGGATAATCTTGTGCTTGCCTTCTACAATCATAGAGTTGCT
GGGTGGGGCAATATTTTCGTACCCTGTGGCGTTGCTGACGTTGACGGTGG
GCAAGCAGCTTGGATGCACGATTGCCTTTCTGATTGGGAAGGTCGTGGCG
TCTAGAGCCATACGGGACACATTGGGTCGGCCGCATCGTGTGTCTTCCTC
TACAATATTAGCGGCAGAGGGAAAGGGAGAGCGGAGCAATACTACTATTG
CGGTTGCTGGTAGTGATGAGCAGCAGAAAGCGTCTCAGGGAAGACGACGC
GGACGACAACCCGCCAGCGCCAGCGGCAGTGACAGCAGCAGTACCAAGCG
GGGCAGGTGGAGCAGCTCCAAACCTATGTCCAAGCGAAAGCGGACGATAC
AAGCCATGTTCTACGCCATGGAATGCCATCCGTGGAAGATCACGCTCCTC
CTCCGCTTCCTCCCCATCCCAATCAGTGTCAAAAATTACGGCATGGCCTG
CCTGCCTTGTCCGACACATGTATTTCTCATCTCCACCTTTGTTGCTTCCC
TTCCTTTCACCTTCATTTGGGTCAACCTAGGGGAGTCGACCAAGAGTTTG
TTGGAGGCACTAAGTGGCAAGGGGGAATCCATGGGAAAGCATGGGCTCTT
CGCACAGGAGATCGCTTTACTGGTGGTGGGCCTGCTGCTGCTGATACTGC
TTGTGGTGATATTGAAACGATACACGCATCGATACGCGGCCGTTTTGGAG
GCGGAGGAAACACCACGTTTGGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCCGTAGCGGAGCAGGGGGCGGGGGGAGGGCAGGATGGAC
ATAGCACGGTAAGGAGTAATTTGACGCTGTCGTCGATACCGACATGGACA
TTGACAGAGGAGGAGGGCGGGGACGAGGGAGGAAGGGAGGAAGGGGAGGA
AGATGAGGATGCGCGGAGTTGCTTCGGGTGGCGAAGACATAGTCGGGAGT
CATTCGTCGAGAGGGAGATCGTGGAGGGACGTGGGATCGCGGGAGGCGAG
GTGTCATTGGTGGTGGTGCCTTCTCTGATGAAAGCAACAGAGGAGACCAT
AAATGACAGGAAGAAGATGGGGAGGAGGGGGGAGGAAGAGGAGAAGGAGG
AGGAAGAAGTGGTCGGAAGTCCTTCTTGTAGTGTGGCATCCGTAGCTTAA

Coding sequence (CDS) from alignment at scaffold_18:324918..326567+

>mRNA_6634 ID=mRNA_6634|Name=jgi.p|Nanoce1779_2|640914|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_18:324918..326567+ (Nannochloropsis oceanica)
ATGGATGATGAGGAGAGCACGGCAGACTTCACCGAGGACATGATCGAGAC
GATGGCATCGGCCGCGGGCATGCATCTAATGCCCCCCCTGGTTACTTTGT
CCTTGAACGACGATGATGAGGAGGAAGAAAAGGGCAAGCCGAAAGCATGC
ACGCAACAGCACCTCTGCCTACGGATTGACGAAGCGGTCGAGGACGGCGA
CGACCATCTGCATGAATTTGACCCGACTGCACTTTCTTCCTGCACTTCCC
AAACGTCAAGAGCCAATAAATGCAAGGGCACGTGTGGCACGCTGAAAAAA
TTGCGGCCGGTCCTGCTGCTTTTGGTGGTGGTAACGACGTTCCTTGTGAG
CGGCAGCTACTTGGTAGTGCGGTACCGGGACAAGGTGTTGGAAGCTTCAG
AATACATTCGCCAGCAAGCCCCTCGTTCTGCCGTGTACTATGCTTTGATT
GTGGCTTTGTGGATAATCTTGTGCTTGCCTTCTACAATCATAGAGTTGCT
GGGTGGGGCAATATTTTCGTACCCTGTGGCGTTGCTGACGTTGACGGTGG
GCAAGCAGCTTGGATGCACGATTGCCTTTCTGATTGGGAAGGTCGTGGCG
TCTAGAGCCATACGGGACACATTGGGTCGGCCGCATCGTGTGTCTTCCTC
TACAATATTAGCGGCAGAGGGAAAGGGAGAGCGGAGCAATACTACTATTG
CGGTTGCTGGTAGTGATGAGCAGCAGAAAGCGTCTCAGGGAAGACGACGC
GGACGACAACCCGCCAGCGCCAGCGGCAGTGACAGCAGCAGTACCAAGCG
GGGCAGGTGGAGCAGCTCCAAACCTATGTCCAAGCGAAAGCGGACGATAC
AAGCCATGTTCTACGCCATGGAATGCCATCCGTGGAAGATCACGCTCCTC
CTCCGCTTCCTCCCCATCCCAATCAGTGTCAAAAATTACGGCATGGCCTG
CCTGCCTTGTCCGACACATGTATTTCTCATCTCCACCTTTGTTGCTTCCC
TTCCTTTCACCTTCATTTGGGTCAACCTAGGGGAGTCGACCAAGAGTTTG
TTGGAGGCACTAAGTGGCAAGGGGGAATCCATGGGAAAGCATGGGCTCTT
CGCACAGGAGATCGCTTTACTGGTGGTGGGCCTGCTGCTGCTGATACTGC
TTGTGGTGATATTGAAACGATACACGCATCGATACGCGGCCGTTTTGGAG
GCGGAGGAAACACCACGTTTGGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCCGTAGCGGAGCAGGGGGCGGGGGGAGGGCAGGATGGAC
ATAGCACGGTAAGGAGTAATTTGACGCTGTCGTCGATACCGACATGGACA
TTGACAGAGGAGGAGGGCGGGGACGAGGGAGGAAGGGAGGAAGGGGAGGA
AGATGAGGATGCGCGGAGTTGCTTCGGGTGGCGAAGACATAGTCGGGAGT
CATTCGTCGAGAGGGAGATCGTGGAGGGACGTGGGATCGCGGGAGGCGAG
GTGTCATTGGTGGTGGTGCCTTCTCTGATGAAAGCAACAGAGGAGACCAT
AAATGACAGGAAGAAGATGGGGAGGAGGGGGGAGGAAGAGGAGAAGGAGG
AGGAAGAAGTGGTCGGAAGTCCTTCTTGTAGTGTGGCATCCGTAGCTTAA

Synonyms

Publications