jgi.p|Nanoce1779_2|597547, mRNA_6633 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597547
Unique NamemRNA_6633
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1340
Alignment locationscaffold_18:323108..324447 +

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Properties
Property NameValue
TranscriptId597633
TrackFilteredModels2
ProteinId597547
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:323108..324447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597547gene_6633Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597547mRNA_6633-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6633CDS_6633Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6633 ID=mRNA_6633|Name=jgi.p|Nanoce1779_2|597547|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp
AGGAGGAGCGCGACGAGGATTGCCACACCACGCCGCCCTTTCCAAGCAGT
ATCAGGATGCTGAGACCATCCCTAATAGGCAGCAGCGGCAGCGGCTGTGG
GATCCTCAGATCAAACCTCCTCGTCCTAGTCTTGGCGGCTGCCACTATGG
TCCAGAGAATAGAGGGCTTCATGCTACCGCTGCAATCCTCCTTCTCCCCC
TCCTCATCTTCCCTTTCCCTCGCTTCTGCCTGTGCTTTTGCCTCCTTCCG
CCCGTCCTCGGTATCAATAAGAAGAAGCTTTGCATTCCCCTCCCTCGCCG
CTACGGGCCCCCAAAAAACCGAGCAGGAACGCACGCCCCAAATCAAAGCG
GCAGGAGGCGCCGGGGAGTTCGATGGCTCCATATGGCACCCGGAGCATCC
ATACCGTGATGCCTTCGTCAAGACGTGCTTGAGCGTGGGCTCGGCGTTGT
TGTTTGGTTTGGGTGTGTGGGCGTGGAAGGGGCCTGATAGCGGCCTCGAG
TACTATGCAGGGTACCTGGTTGAACAATCCTTGTCAGTCGACAACCTCTT
TGTGTTTGTCGTACTCTTTGAATATTTCAAGGTGCCCACTGACTACCAGG
GAAGAGTGCTGAGTTGGGGCATTTTTGGGGCCATGGCAATGAGGGCTCTC
ATGGTCTTAGCGGGGGTGGAGGCAATCGAAAATTTTCGAGTGGTTCTCCT
TGCATTCGCTGGCATCCTAGTGTTTACCTCTGTGAAGCTGCTGTCGGAGG
ATGACAGTGAGGAGGGAGAGGAGGATTTGGCGGAAAATCAGATCGTAAAG
TTTGCGCGGTCCTTGATCACAACGACTGATGATTATGATGGGCCGAATTT
TTTCACGGAGGTGGAAGGCAGGGGACGGGTGGCGACTCCTCTGCTCCTCG
TCCTGATCTGCGTCGAGCTGTCCGATGTTGTGTTTGCGGTCGACTCGGTG
CCGGCAGTGTTCGGTGTGACGAAGGATCCTTTCGTTGTTTATACGTCGAA
TATTTTCGCGATTCTGGGCTTGAGATCTTTGTACACCGTCCTGGCCAATG
CGATGGTGGACCTGCCTTACCTCAAGCCGGCCGTGGCATTGATTTTGGGG
CTGGTGGGGATGAAGCTGGGAGGGGAGTACTTTGGTTTTGAGGTGTCGAA
TGTCGTGTCGCTAGGGGTCATAGCTTCGGTGTTGGGCTCGGGGGTGTGGG
CGAGTTTGTATTTGAAACCCAAGGAGGAAGGACAATAGGAATGGTGAATG
ACGAGCACGCTGGCTGCAGCGAGGAAGCAGAGAAGATGAAGAAGAAAAAA
TGCTCATTGGTCATGTGTCGAGGAAGGTGGGTCGTTGTTG
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protein sequence of jgi.p|Nanoce1779_2|597547

>mRNA_6633-protein ID=mRNA_6633-protein|Name=jgi.p|Nanoce1779_2|597547|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MLRPSLIGSSGSGCGILRSNLLVLVLAAATMVQRIEGFMLPLQSSFSPSS
SSLSLASACAFASFRPSSVSIRRSFAFPSLAATGPQKTEQERTPQIKAAG
GAGEFDGSIWHPEHPYRDAFVKTCLSVGSALLFGLGVWAWKGPDSGLEYY
AGYLVEQSLSVDNLFVFVVLFEYFKVPTDYQGRVLSWGIFGAMAMRALMV
LAGVEAIENFRVVLLAFAGILVFTSVKLLSEDDSEEGEEDLAENQIVKFA
RSLITTTDDYDGPNFFTEVEGRGRVATPLLLVLICVELSDVVFAVDSVPA
VFGVTKDPFVVYTSNIFAILGLRSLYTVLANAMVDLPYLKPAVALILGLV
GMKLGGEYFGFEVSNVVSLGVIASVLGSGVWASLYLKPKEEGQ*
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mRNA from alignment at scaffold_18:323108..324447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6633 ID=mRNA_6633|Name=jgi.p|Nanoce1779_2|597547|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp|location=Sequence derived from alignment at scaffold_18:323108..324447+ (Nannochloropsis oceanica)
AGGAGGAGCGCGACGAGGATTGCCACACCACGCCGCCCTTTCCAAGCAGT
ATCAGGATGCTGAGACCATCCCTAATAGGCAGCAGCGGCAGCGGCTGTGG
GATCCTCAGATCAAACCTCCTCGTCCTAGTCTTGGCGGCTGCCACTATGG
TCCAGAGAATAGAGGGCTTCATGCTACCGCTGCAATCCTCCTTCTCCCCC
TCCTCATCTTCCCTTTCCCTCGCTTCTGCCTGTGCTTTTGCCTCCTTCCG
CCCGTCCTCGGTATCAATAAGAAGAAGCTTTGCATTCCCCTCCCTCGCCG
CTACGGGCCCCCAAAAAACCGAGCAGGAACGCACGCCCCAAATCAAAGCG
GCAGGAGGCGCCGGGGAGTTCGATGGCTCCATATGGCACCCGGAGCATCC
ATACCGTGATGCCTTCGTCAAGACGTGCTTGAGCGTGGGCTCGGCGTTGT
TGTTTGGTTTGGGTGTGTGGGCGTGGAAGGGGCCTGATAGCGGCCTCGAG
TACTATGCAGGGTACCTGGTTGAACAATCCTTGTCAGTCGACAACCTCTT
TGTGTTTGTCGTACTCTTTGAATATTTCAAGGTGCCCACTGACTACCAGG
GAAGAGTGCTGAGTTGGGGCATTTTTGGGGCCATGGCAATGAGGGCTCTC
ATGGTCTTAGCGGGGGTGGAGGCAATCGAAAATTTTCGAGTGGTTCTCCT
TGCATTCGCTGGCATCCTAGTGTTTACCTCTGTGAAGCTGCTGTCGGAGG
ATGACAGTGAGGAGGGAGAGGAGGATTTGGCGGAAAATCAGATCGTAAAG
TTTGCGCGGTCCTTGATCACAACGACTGATGATTATGATGGGCCGAATTT
TTTCACGGAGGTGGAAGGCAGGGGACGGGTGGCGACTCCTCTGCTCCTCG
TCCTGATCTGCGTCGAGCTGTCCGATGTTGTGTTTGCGGTCGACTCGGTG
CCGGCAGTGTTCGGTGTGACGAAGGATCCTTTCGTTGTTTATACGTCGAA
TATTTTCGCGATTCTGGGCTTGAGATCTTTGTACACCGTCCTGGCCAATG
CGATGGTGGACCTGCCTTACCTCAAGCCGGCCGTGGCATTGATTTTGGGG
CTGGTGGGGATGAAGCTGGGAGGGGAGTACTTTGGTTTTGAGGTGTCGAA
TGTCGTGTCGCTAGGGGTCATAGCTTCGGTGTTGGGCTCGGGGGTGTGGG
CGAGTTTGTATTTGAAACCCAAGGAGGAAGGACAATAGGAATGGTGAATG
ACGAGCACGCTGGCTGCAGCGAGGAAGCAGAGAAGATGAAGAAGAAAAAA
TGCTCATTGGTCATGTGTCGAGGAAGGTGGGTCGTTGTTG
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Coding sequence (CDS) from alignment at scaffold_18:323108..324447+

>mRNA_6633 ID=mRNA_6633|Name=jgi.p|Nanoce1779_2|597547|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_18:323108..324447+ (Nannochloropsis oceanica)
ATGCTGAGACCATCCCTAATAGGCAGCAGCGGCAGCGGCTGTGGGATCCT
CAGATCAAACCTCCTCGTCCTAGTCTTGGCGGCTGCCACTATGGTCCAGA
GAATAGAGGGCTTCATGCTACCGCTGCAATCCTCCTTCTCCCCCTCCTCA
TCTTCCCTTTCCCTCGCTTCTGCCTGTGCTTTTGCCTCCTTCCGCCCGTC
CTCGGTATCAATAAGAAGAAGCTTTGCATTCCCCTCCCTCGCCGCTACGG
GCCCCCAAAAAACCGAGCAGGAACGCACGCCCCAAATCAAAGCGGCAGGA
GGCGCCGGGGAGTTCGATGGCTCCATATGGCACCCGGAGCATCCATACCG
TGATGCCTTCGTCAAGACGTGCTTGAGCGTGGGCTCGGCGTTGTTGTTTG
GTTTGGGTGTGTGGGCGTGGAAGGGGCCTGATAGCGGCCTCGAGTACTAT
GCAGGGTACCTGGTTGAACAATCCTTGTCAGTCGACAACCTCTTTGTGTT
TGTCGTACTCTTTGAATATTTCAAGGTGCCCACTGACTACCAGGGAAGAG
TGCTGAGTTGGGGCATTTTTGGGGCCATGGCAATGAGGGCTCTCATGGTC
TTAGCGGGGGTGGAGGCAATCGAAAATTTTCGAGTGGTTCTCCTTGCATT
CGCTGGCATCCTAGTGTTTACCTCTGTGAAGCTGCTGTCGGAGGATGACA
GTGAGGAGGGAGAGGAGGATTTGGCGGAAAATCAGATCGTAAAGTTTGCG
CGGTCCTTGATCACAACGACTGATGATTATGATGGGCCGAATTTTTTCAC
GGAGGTGGAAGGCAGGGGACGGGTGGCGACTCCTCTGCTCCTCGTCCTGA
TCTGCGTCGAGCTGTCCGATGTTGTGTTTGCGGTCGACTCGGTGCCGGCA
GTGTTCGGTGTGACGAAGGATCCTTTCGTTGTTTATACGTCGAATATTTT
CGCGATTCTGGGCTTGAGATCTTTGTACACCGTCCTGGCCAATGCGATGG
TGGACCTGCCTTACCTCAAGCCGGCCGTGGCATTGATTTTGGGGCTGGTG
GGGATGAAGCTGGGAGGGGAGTACTTTGGTTTTGAGGTGTCGAATGTCGT
GTCGCTAGGGGTCATAGCTTCGGTGTTGGGCTCGGGGGTGTGGGCGAGTT
TGTATTTGAAACCCAAGGAGGAAGGACAATAG
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Synonyms
Publications