jgi.p|Nanoce1779_2|597544, mRNA_6631 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597544
Unique NamemRNA_6631
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length801
Alignment locationscaffold_18:318728..319528 +

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Properties
Property NameValue
TranscriptId597630
TrackFilteredModels2
ProteinId597544
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:318728..319528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597544gene_6631Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597544mRNA_6631-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6631CDS_6631Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6631 ID=mRNA_6631|Name=jgi.p|Nanoce1779_2|597544|organism=Nannochloropsis oceanica|type=mRNA|length=801bp
AGTAGCAGCAGTAGCAGTATGACTTCCAACACCGGCACCGAATCAACATT
GTCAAAATTAGATTCCCCCGCGTACCACAAAAGTAAGGAGGAAGAAGCTC
CGGTCACCTCTACCAAGGCAGCAGCCGCACCGACCTTACCTCAGCACCAC
ACTGAAGCAGACGACAACGGTAGCGGCGGTGGCATCGAGGGTCGCAATCG
TGAGCTCCTTGCCACGTTCACGATGGTTGCTAGCGTGCTGTGTGCGATCG
ACTGCACTGTCTTCCCCGTCCTTCTTACCGTGCTCCCTGCCGCTGAATGG
TTGGGAGGGGTAGATTTACATGCCCTTTCAACCAACGTGGCTTTGTATTT
GGTCTTGCCGATAGGGAGTACTACCACGCTGGCTAATTGGTTAATGCACC
GCAACCTGACCTTGGCAGCCATGAGTGTGGGGGGTCTGTCGTTGATTTTA
ATGAGTAATTATGCGGGTTTGACGGAGACTCTTGGATGGATGCAGGATTC
ACGGATGTATAATACGGTGGGATGCGGGTTGTTGCTCGGCTCGTCGTGGT
TGGCACATCACCATGAGAAGGATAGTGGTCATCATGGTGGTGAGAAAGGA
GGAACAGGGAAAGGAAAGAAGCGTTGCAACTAGAATGATGCAGGGCGGAA
GAGTGTGTAAGTCTTTTGGTGGGCCTGAGGATGGGCTCATCATTTCAAAG
GAGGATGAGGTGGAAGAGGAGGGGGGGGGGGAGGAGGAGGAGGAGGAGAA
GGAGGATGAGGTTTTGTCAATAAATTGTGAGTGAGAGGAAATAAGATTGT
G
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protein sequence of jgi.p|Nanoce1779_2|597544

>mRNA_6631-protein ID=mRNA_6631-protein|Name=jgi.p|Nanoce1779_2|597544|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MTSNTGTESTLSKLDSPAYHKSKEEEAPVTSTKAAAAPTLPQHHTEADDN
GSGGGIEGRNRELLATFTMVASVLCAIDCTVFPVLLTVLPAAEWLGGVDL
HALSTNVALYLVLPIGSTTTLANWLMHRNLTLAAMSVGGLSLILMSNYAG
LTETLGWMQDSRMYNTVGCGLLLGSSWLAHHHEKDSGHHGGEKGGTGKGK
KRCN*
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mRNA from alignment at scaffold_18:318728..319528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6631 ID=mRNA_6631|Name=jgi.p|Nanoce1779_2|597544|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at scaffold_18:318728..319528+ (Nannochloropsis oceanica)
AGTAGCAGCAGTAGCAGTATGACTTCCAACACCGGCACCGAATCAACATT
GTCAAAATTAGATTCCCCCGCGTACCACAAAAGTAAGGAGGAAGAAGCTC
CGGTCACCTCTACCAAGGCAGCAGCCGCACCGACCTTACCTCAGCACCAC
ACTGAAGCAGACGACAACGGTAGCGGCGGTGGCATCGAGGGTCGCAATCG
TGAGCTCCTTGCCACGTTCACGATGGTTGCTAGCGTGCTGTGTGCGATCG
ACTGCACTGTCTTCCCCGTCCTTCTTACCGTGCTCCCTGCCGCTGAATGG
TTGGGAGGGGTAGATTTACATGCCCTTTCAACCAACGTGGCTTTGTATTT
GGTCTTGCCGATAGGGAGTACTACCACGCTGGCTAATTGGTTAATGCACC
GCAACCTGACCTTGGCAGCCATGAGTGTGGGGGGTCTGTCGTTGATTTTA
ATGAGTAATTATGCGGGTTTGACGGAGACTCTTGGATGGATGCAGGATTC
ACGGATGTATAATACGGTGGGATGCGGGTTGTTGCTCGGCTCGTCGTGGT
TGGCACATCACCATGAGAAGGATAGTGGTCATCATGGTGGTGAGAAAGGA
GGAACAGGGAAAGGAAAGAAGCGTTGCAACTAGAATGATGCAGGGCGGAA
GAGTGTGTAAGTCTTTTGGTGGGCCTGAGGATGGGCTCATCATTTCAAAG
GAGGATGAGGTGGAAGAGGAGGGGGGGGGGGAGGAGGAGGAGGAGGAGAA
GGAGGATGAGGTTTTGTCAATAAATTGTGAGTGAGAGGAAATAAGATTGT
G
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Coding sequence (CDS) from alignment at scaffold_18:318728..319528+

>mRNA_6631 ID=mRNA_6631|Name=jgi.p|Nanoce1779_2|597544|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_18:318728..319528+ (Nannochloropsis oceanica)
ATGACTTCCAACACCGGCACCGAATCAACATTGTCAAAATTAGATTCCCC
CGCGTACCACAAAAGTAAGGAGGAAGAAGCTCCGGTCACCTCTACCAAGG
CAGCAGCCGCACCGACCTTACCTCAGCACCACACTGAAGCAGACGACAAC
GGTAGCGGCGGTGGCATCGAGGGTCGCAATCGTGAGCTCCTTGCCACGTT
CACGATGGTTGCTAGCGTGCTGTGTGCGATCGACTGCACTGTCTTCCCCG
TCCTTCTTACCGTGCTCCCTGCCGCTGAATGGTTGGGAGGGGTAGATTTA
CATGCCCTTTCAACCAACGTGGCTTTGTATTTGGTCTTGCCGATAGGGAG
TACTACCACGCTGGCTAATTGGTTAATGCACCGCAACCTGACCTTGGCAG
CCATGAGTGTGGGGGGTCTGTCGTTGATTTTAATGAGTAATTATGCGGGT
TTGACGGAGACTCTTGGATGGATGCAGGATTCACGGATGTATAATACGGT
GGGATGCGGGTTGTTGCTCGGCTCGTCGTGGTTGGCACATCACCATGAGA
AGGATAGTGGTCATCATGGTGGTGAGAAAGGAGGAACAGGGAAAGGAAAG
AAGCGTTGCAACTAG
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Synonyms
Publications